data_9MK7
#
_model_server_result.job_id            OPtnSylq4ZdbSl1pt3UkgQ 
_model_server_result.datetime_utc      '2025-02-27 10:24:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mk7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    9MK7 
#
_exptl.entry_id    9MK7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              410.514 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R)-1-({(6M)-2-(methylamino)-6-[3-(pyrrolidin-1-yl)phenyl]pyrimidin-4-yl}amino)-2,3-dihydro-1H-indene-4-carbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MK7 
_cell.length_a            79.201 
_cell.length_b            132.236 
_cell.length_c            118.291 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MK7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H26 N6' 
_chem_comp.formula_weight    410.514 
_chem_comp.id                A1BLV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R)-1-({(6M)-2-(methylamino)-6-[3-(pyrrolidin-1-yl)phenyl]pyrimidin-4-yl}amino)-2,3-dihydro-1H-indene-4-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C27 A1BLV sing 1 n n 
C26 C25 A1BLV sing 2 n n 
C27 N23 A1BLV sing 3 n n 
C28 C29 A1BLV doub 4 n y 
C28 C22 A1BLV sing 5 n y 
C29 C30 A1BLV sing 6 n y 
C25 C24 A1BLV sing 7 n n 
N23 C22 A1BLV sing 8 n n 
N23 C24 A1BLV sing 9 n n 
C22 C21 A1BLV doub 10 n y 
C30 C20 A1BLV doub 11 n y 
C21 C20 A1BLV sing 12 n y 
C20 C19 A1BLV sing 13 n n 
C19 C18 A1BLV doub 14 n y 
C19 N31 A1BLV sing 15 n y 
C18 C5 A1BLV sing 16 n y 
N31 C3 A1BLV doub 17 n y 
C5 N6 A1BLV sing 18 n n 
C5 N4 A1BLV doub 19 n y 
C3 N4 A1BLV sing 20 n y 
C3 N2 A1BLV sing 21 n n 
N6 C7 A1BLV sing 22 n n 
N2 C1 A1BLV sing 23 n n 
C8 C7 A1BLV sing 24 n n 
C8 C9 A1BLV sing 25 n n 
C7 C11 A1BLV sing 26 n n 
C11 C12 A1BLV doub 27 n y 
C11 C10 A1BLV sing 28 n y 
C9 C10 A1BLV sing 29 n n 
C12 C13 A1BLV sing 30 n y 
C10 C15 A1BLV doub 31 n y 
C13 C14 A1BLV doub 32 n y 
C15 C14 A1BLV sing 33 n y 
C15 C16 A1BLV sing 34 n n 
C16 N17 A1BLV trip 35 n n 
C7 H1 A1BLV sing 36 n n 
C8 H2 A1BLV sing 37 n n 
C8 H3 A1BLV sing 38 n n 
C13 H4 A1BLV sing 39 n n 
C21 H5 A1BLV sing 40 n n 
C24 H6 A1BLV sing 41 n n 
C24 H7 A1BLV sing 42 n n 
C26 H8 A1BLV sing 43 n n 
C26 H9 A1BLV sing 44 n n 
C28 H10 A1BLV sing 45 n n 
C1 H11 A1BLV sing 46 n n 
C1 H12 A1BLV sing 47 n n 
C1 H13 A1BLV sing 48 n n 
N2 H14 A1BLV sing 49 n n 
N6 H15 A1BLV sing 50 n n 
C9 H16 A1BLV sing 51 n n 
C9 H17 A1BLV sing 52 n n 
C12 H18 A1BLV sing 53 n n 
C14 H19 A1BLV sing 54 n n 
C18 H20 A1BLV sing 55 n n 
C25 H21 A1BLV sing 56 n n 
C25 H22 A1BLV sing 57 n n 
C27 H23 A1BLV sing 58 n n 
C27 H24 A1BLV sing 59 n n 
C29 H25 A1BLV sing 60 n n 
C30 H26 A1BLV sing 61 n n 
#
_atom_sites.entry_id                     9MK7 
_atom_sites.fract_transf_matrix[1][1]    0.012626 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007562 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1BLV A 1 801 801 A1BLV LIG . 
C 3 UNX A 1 802 1001 UNX UNX . 
D 4 HOH A 1 901 117 HOH HOH . 
D 4 HOH A 2 902 44 HOH HOH . 
D 4 HOH A 3 903 32 HOH HOH . 
D 4 HOH A 4 904 76 HOH HOH . 
D 4 HOH A 5 905 105 HOH HOH . 
D 4 HOH A 6 906 42 HOH HOH . 
D 4 HOH A 7 907 88 HOH HOH . 
D 4 HOH A 8 908 116 HOH HOH . 
D 4 HOH A 9 909 82 HOH HOH . 
D 4 HOH A 10 910 79 HOH HOH . 
D 4 HOH A 11 911 71 HOH HOH . 
D 4 HOH A 12 912 11 HOH HOH . 
D 4 HOH A 13 913 100 HOH HOH . 
D 4 HOH A 14 914 81 HOH HOH . 
D 4 HOH A 15 915 109 HOH HOH . 
D 4 HOH A 16 916 70 HOH HOH . 
D 4 HOH A 17 917 43 HOH HOH . 
D 4 HOH A 18 918 15 HOH HOH . 
D 4 HOH A 19 919 85 HOH HOH . 
D 4 HOH A 20 920 90 HOH HOH . 
D 4 HOH A 21 921 56 HOH HOH . 
D 4 HOH A 22 922 99 HOH HOH . 
D 4 HOH A 23 923 50 HOH HOH . 
D 4 HOH A 24 924 41 HOH HOH . 
D 4 HOH A 25 925 113 HOH HOH . 
D 4 HOH A 26 926 98 HOH HOH . 
D 4 HOH A 27 927 61 HOH HOH . 
D 4 HOH A 28 928 78 HOH HOH . 
D 4 HOH A 29 929 72 HOH HOH . 
D 4 HOH A 30 930 9 HOH HOH . 
D 4 HOH A 31 931 3 HOH HOH . 
D 4 HOH A 32 932 64 HOH HOH . 
D 4 HOH A 33 933 111 HOH HOH . 
D 4 HOH A 34 934 115 HOH HOH . 
D 4 HOH A 35 935 75 HOH HOH . 
D 4 HOH A 36 936 1 HOH HOH . 
D 4 HOH A 37 937 21 HOH HOH . 
D 4 HOH A 38 938 101 HOH HOH . 
D 4 HOH A 39 939 73 HOH HOH . 
D 4 HOH A 40 940 107 HOH HOH . 
D 4 HOH A 41 941 51 HOH HOH . 
D 4 HOH A 42 942 84 HOH HOH . 
D 4 HOH A 43 943 106 HOH HOH . 
D 4 HOH A 44 944 95 HOH HOH . 
D 4 HOH A 45 945 26 HOH HOH . 
D 4 HOH A 46 946 118 HOH HOH . 
D 4 HOH A 47 947 86 HOH HOH . 
D 4 HOH A 48 948 40 HOH HOH . 
D 4 HOH A 49 949 69 HOH HOH . 
D 4 HOH A 50 950 74 HOH HOH . 
D 4 HOH A 51 951 65 HOH HOH . 
D 4 HOH A 52 952 45 HOH HOH . 
D 4 HOH A 53 953 97 HOH HOH . 
D 4 HOH A 54 954 87 HOH HOH . 
D 4 HOH A 55 955 5 HOH HOH . 
D 4 HOH A 56 956 103 HOH HOH . 
D 4 HOH A 57 957 60 HOH HOH . 
D 4 HOH A 58 958 46 HOH HOH . 
D 4 HOH A 59 959 39 HOH HOH . 
D 4 HOH A 60 960 28 HOH HOH . 
D 4 HOH A 61 961 96 HOH HOH . 
D 4 HOH A 62 962 4 HOH HOH . 
D 4 HOH A 63 963 112 HOH HOH . 
D 4 HOH A 64 964 102 HOH HOH . 
D 4 HOH A 65 965 47 HOH HOH . 
D 4 HOH A 66 966 93 HOH HOH . 
D 4 HOH A 67 967 108 HOH HOH . 
D 4 HOH A 68 968 7 HOH HOH . 
D 4 HOH A 69 969 80 HOH HOH . 
D 4 HOH A 70 970 53 HOH HOH . 
D 4 HOH A 71 971 92 HOH HOH . 
D 4 HOH A 72 972 36 HOH HOH . 
D 4 HOH A 73 973 13 HOH HOH . 
D 4 HOH A 74 974 62 HOH HOH . 
D 4 HOH A 75 975 33 HOH HOH . 
D 4 HOH A 76 976 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 A1BLV . . . B 2 -18.932 -25.88 -25.436 1 67.88 ? C5 A1BLV 801 A 1 
HETATM 2 C C7 A1BLV . . . B 2 -19.875 -27.339 -23.623 1 56.75 ? C7 A1BLV 801 A 1 
HETATM 3 C C8 A1BLV . . . B 2 -20.005 -28.872 -23.709 1 55.83 ? C8 A1BLV 801 A 1 
HETATM 4 C C10 A1BLV . . . B 2 -21.247 -28.065 -21.833 1 52.37 ? C10 A1BLV 801 A 1 
HETATM 5 C C13 A1BLV . . . B 2 -22.298 -25.554 -21.216 1 46.9 ? C13 A1BLV 801 A 1 
HETATM 6 C C15 A1BLV . . . B 2 -22.136 -27.917 -20.756 1 48.1 ? C15 A1BLV 801 A 1 
HETATM 7 C C20 A1BLV . . . B 2 -18.171 -23.179 -27.976 1 85.4 ? C20 A1BLV 801 A 1 
HETATM 8 C C21 A1BLV . . . B 2 -17.09 -22.319 -28.198 1 96.97 ? C21 A1BLV 801 A 1 
HETATM 9 C C22 A1BLV . . . B 2 -17.146 -21.331 -29.191 1 103.69 ? C22 A1BLV 801 A 1 
HETATM 10 C C24 A1BLV . . . B 2 -14.783 -20.551 -28.671 1 119.51 ? C24 A1BLV 801 A 1 
HETATM 11 C C26 A1BLV . . . B 2 -14.386 -19.371 -30.739 1 126.32 ? C26 A1BLV 801 A 1 
HETATM 12 C C28 A1BLV . . . B 2 -18.311 -21.205 -29.961 1 95.02 ? C28 A1BLV 801 A 1 
HETATM 13 C C1 A1BLV . . . B 2 -15.271 -26.21 -23.66 1 72.49 ? C1 A1BLV 801 A 1 
HETATM 14 N N2 A1BLV . . . B 2 -15.589 -25.232 -24.671 1 72.32 ? N2 A1BLV 801 A 1 
HETATM 15 C C3 A1BLV . . . B 2 -16.795 -25.117 -25.24 1 71.86 ? C3 A1BLV 801 A 1 
HETATM 16 N N4 A1BLV . . . B 2 -17.757 -25.937 -24.792 1 68.83 ? N4 A1BLV 801 A 1 
HETATM 17 N N6 A1BLV . . . B 2 -19.95 -26.619 -24.886 1 60.95 ? N6 A1BLV 801 A 1 
HETATM 18 C C9 A1BLV . . . B 2 -20.612 -29.323 -22.365 1 54.01 ? C9 A1BLV 801 A 1 
HETATM 19 C C11 A1BLV . . . B 2 -20.892 -26.947 -22.578 1 52.76 ? C11 A1BLV 801 A 1 
HETATM 20 C C12 A1BLV . . . B 2 -21.42 -25.696 -22.274 1 51.95 ? C12 A1BLV 801 A 1 
HETATM 21 C C14 A1BLV . . . B 2 -22.659 -26.658 -20.459 1 46.36 ? C14 A1BLV 801 A 1 
HETATM 22 C C16 A1BLV . . . B 2 -22.392 -29.029 -19.877 1 53.58 ? C16 A1BLV 801 A 1 
HETATM 23 N N17 A1BLV . . . B 2 -22.576 -29.939 -19.206 1 54.21 ? N17 A1BLV 801 A 1 
HETATM 24 C C18 A1BLV . . . B 2 -19.142 -25.028 -26.53 1 73.4 ? C18 A1BLV 801 A 1 
HETATM 25 C C19 A1BLV . . . B 2 -18.072 -24.211 -26.906 1 76.37 ? C19 A1BLV 801 A 1 
HETATM 26 N N23 A1BLV . . . B 2 -16.015 -20.527 -29.466 1 116.12 ? N23 A1BLV 801 A 1 
HETATM 27 C C25 A1BLV . . . B 2 -13.701 -20.285 -29.698 1 123.56 ? C25 A1BLV 801 A 1 
HETATM 28 C C27 A1BLV . . . B 2 -15.899 -19.649 -30.634 1 118.75 ? C27 A1BLV 801 A 1 
HETATM 29 C C29 A1BLV . . . B 2 -19.38 -22.056 -29.742 1 90.19 ? C29 A1BLV 801 A 1 
HETATM 30 C C30 A1BLV . . . B 2 -19.315 -23.033 -28.76 1 88.28 ? C30 A1BLV 801 A 1 
HETATM 31 N N31 A1BLV . . . B 2 -16.895 -24.255 -26.265 1 77.25 ? N31 A1BLV 801 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#