data_9MLM # _model_server_result.job_id cOUkaawUjMyzIzlv1n_HnQ _model_server_result.datetime_utc '2025-08-27 20:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9MLM # _exptl.entry_id 9MLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9MLM _cell.length_a 133.496 _cell.length_b 133.496 _cell.length_c 75.317 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 9MLM _atom_sites.fract_transf_matrix[1][1] 0.007491 _atom_sites.fract_transf_matrix[1][2] 0.004325 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 601 601 NDP NDP . C 2 NDP A 1 602 601 NDP NDP . D 3 OED A 1 603 602 OED OED . E 4 HOH A 1 701 4 HOH HOH . E 4 HOH A 2 702 44 HOH HOH . E 4 HOH A 3 703 29 HOH HOH . E 4 HOH A 4 704 33 HOH HOH . E 4 HOH A 5 705 45 HOH HOH . E 4 HOH A 6 706 40 HOH HOH . E 4 HOH A 7 707 13 HOH HOH . E 4 HOH A 8 708 14 HOH HOH . E 4 HOH A 9 709 15 HOH HOH . E 4 HOH A 10 710 60 HOH HOH . E 4 HOH A 11 711 61 HOH HOH . E 4 HOH A 12 712 26 HOH HOH . E 4 HOH A 13 713 6 HOH HOH . E 4 HOH A 14 714 1 HOH HOH . E 4 HOH A 15 715 63 HOH HOH . E 4 HOH A 16 716 54 HOH HOH . E 4 HOH A 17 717 7 HOH HOH . E 4 HOH A 18 718 41 HOH HOH . E 4 HOH A 19 719 17 HOH HOH . E 4 HOH A 20 720 21 HOH HOH . E 4 HOH A 21 721 19 HOH HOH . E 4 HOH A 22 722 24 HOH HOH . E 4 HOH A 23 723 38 HOH HOH . E 4 HOH A 24 724 43 HOH HOH . E 4 HOH A 25 725 51 HOH HOH . E 4 HOH A 26 726 22 HOH HOH . E 4 HOH A 27 727 18 HOH HOH . E 4 HOH A 28 728 27 HOH HOH . E 4 HOH A 29 729 34 HOH HOH . E 4 HOH A 30 730 52 HOH HOH . E 4 HOH A 31 731 55 HOH HOH . E 4 HOH A 32 732 9 HOH HOH . E 4 HOH A 33 733 46 HOH HOH . E 4 HOH A 34 734 25 HOH HOH . E 4 HOH A 35 735 58 HOH HOH . E 4 HOH A 36 736 28 HOH HOH . E 4 HOH A 37 737 23 HOH HOH . E 4 HOH A 38 738 57 HOH HOH . E 4 HOH A 39 739 30 HOH HOH . E 4 HOH A 40 740 5 HOH HOH . E 4 HOH A 41 741 49 HOH HOH . E 4 HOH A 42 742 2 HOH HOH . E 4 HOH A 43 743 12 HOH HOH . E 4 HOH A 44 744 39 HOH HOH . E 4 HOH A 45 745 62 HOH HOH . E 4 HOH A 46 746 11 HOH HOH . E 4 HOH A 47 747 20 HOH HOH . E 4 HOH A 48 748 16 HOH HOH . E 4 HOH A 49 749 10 HOH HOH . E 4 HOH A 50 750 35 HOH HOH . E 4 HOH A 51 751 31 HOH HOH . E 4 HOH A 52 752 50 HOH HOH . E 4 HOH A 53 753 42 HOH HOH . E 4 HOH A 54 754 8 HOH HOH . E 4 HOH A 55 755 32 HOH HOH . E 4 HOH A 56 756 37 HOH HOH . E 4 HOH A 57 757 47 HOH HOH . E 4 HOH A 58 758 59 HOH HOH . E 4 HOH A 59 759 56 HOH HOH . E 4 HOH A 60 760 53 HOH HOH . E 4 HOH A 61 761 3 HOH HOH . E 4 HOH A 62 762 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -5.482 -62.211 8.244 1 25.82 ? PA NDP 602 A 1 HETATM 2 O O1A NDP . . . C 2 -5.653 -61.652 9.617 1 27.68 ? O1A NDP 602 A 1 HETATM 3 O O2A NDP . . . C 2 -6.109 -61.569 7.05 1 27.21 ? O2A NDP 602 A 1 HETATM 4 O O5B NDP . . . C 2 -3.873 -62.29 7.94 1 24.87 ? O5B NDP 602 A 1 HETATM 5 C C5B NDP . . . C 2 -3.27 -62.907 9.055 1 23.99 ? C5B NDP 602 A 1 HETATM 6 C C4B NDP . . . C 2 -1.788 -62.562 8.89 1 23.5 ? C4B NDP 602 A 1 HETATM 7 O O4B NDP . . . C 2 -1.664 -61.15 8.96 1 25.08 ? O4B NDP 602 A 1 HETATM 8 C C3B NDP . . . C 2 -0.871 -63.148 9.984 1 26.13 ? C3B NDP 602 A 1 HETATM 9 O O3B NDP . . . C 2 -0.486 -64.449 9.658 1 26.76 ? O3B NDP 602 A 1 HETATM 10 C C2B NDP . . . C 2 0.319 -62.203 9.771 1 27.65 ? C2B NDP 602 A 1 HETATM 11 O O2B NDP . . . C 2 0.862 -62.312 8.576 1 28.09 ? O2B NDP 602 A 1 HETATM 12 C C1B NDP . . . C 2 -0.459 -60.857 9.65 1 25.02 ? C1B NDP 602 A 1 HETATM 13 N N9A NDP . . . C 2 -0.79 -60.19 10.9 1 26.2 ? N9A NDP 602 A 1 HETATM 14 C C8A NDP . . . C 2 -2.023 -60.135 11.571 1 28.65 ? C8A NDP 602 A 1 HETATM 15 N N7A NDP . . . C 2 -1.973 -59.395 12.698 1 28.68 ? N7A NDP 602 A 1 HETATM 16 C C5A NDP . . . C 2 -0.647 -58.942 12.738 1 29.13 ? C5A NDP 602 A 1 HETATM 17 C C6A NDP . . . C 2 0.042 -58.13 13.648 1 29.94 ? C6A NDP 602 A 1 HETATM 18 N N6A NDP . . . C 2 -0.605 -57.625 14.748 1 32.26 ? N6A NDP 602 A 1 HETATM 19 N N1A NDP . . . C 2 1.362 -57.814 13.473 1 30.56 ? N1A NDP 602 A 1 HETATM 20 C C2A NDP . . . C 2 1.935 -58.356 12.353 1 28.2 ? C2A NDP 602 A 1 HETATM 21 N N3A NDP . . . C 2 1.416 -59.145 11.398 1 26.44 ? N3A NDP 602 A 1 HETATM 22 C C4A NDP . . . C 2 0.095 -59.429 11.622 1 27.03 ? C4A NDP 602 A 1 HETATM 23 O O3 NDP . . . C 2 -5.859 -63.848 8.308 1 26.19 ? O3 NDP 602 A 1 HETATM 24 P PN NDP . . . C 2 -7.351 -64.31 8.684 1 26.02 ? PN NDP 602 A 1 HETATM 25 O O1N NDP . . . C 2 -7.382 -65.736 8.296 1 26.22 ? O1N NDP 602 A 1 HETATM 26 O O2N NDP . . . C 2 -7.851 -63.889 10.049 1 27.56 ? O2N NDP 602 A 1 HETATM 27 O O5D NDP . . . C 2 -8.562 -63.616 7.627 1 26.05 ? O5D NDP 602 A 1 HETATM 28 C C4D NDP . . . C 2 -9.715 -64.956 6.075 1 25.67 ? C4D NDP 602 A 1 HETATM 29 O O4D NDP . . . C 2 -10.889 -64.212 6.476 1 24.32 ? O4D NDP 602 A 1 HETATM 30 C C3D NDP . . . C 2 -9.812 -65.114 4.55 1 24.51 ? C3D NDP 602 A 1 HETATM 31 O O3D NDP . . . C 2 -10.569 -66.255 4.313 1 27.37 ? O3D NDP 602 A 1 HETATM 32 C C2D NDP . . . C 2 -10.58 -63.851 4.161 1 29.03 ? C2D NDP 602 A 1 HETATM 33 O O2D NDP . . . C 2 -11.255 -63.998 2.959 1 28.48 ? O2D NDP 602 A 1 HETATM 34 C C1D NDP . . . C 2 -11.62 -63.81 5.313 1 24.06 ? C1D NDP 602 A 1 HETATM 35 N N1N NDP . . . C 2 -12.106 -62.441 5.549 1 23.81 ? N1N NDP 602 A 1 HETATM 36 C C2N NDP . . . C 2 -13.455 -62.162 5.463 1 25.5 ? C2N NDP 602 A 1 HETATM 37 C C3N NDP . . . C 2 -13.937 -60.949 5.84 1 26.71 ? C3N NDP 602 A 1 HETATM 38 C C7N NDP . . . C 2 -15.373 -60.727 5.747 1 24.36 ? C7N NDP 602 A 1 HETATM 39 O O7N NDP . . . C 2 -15.898 -59.62 5.914 1 26.06 ? O7N NDP 602 A 1 HETATM 40 N N7N NDP . . . C 2 -16.179 -61.809 5.471 1 22.31 ? N7N NDP 602 A 1 HETATM 41 C C4N NDP . . . C 2 -13.06 -59.862 6.336 1 24.27 ? C4N NDP 602 A 1 HETATM 42 C C5N NDP . . . C 2 -11.635 -60.224 6.297 1 26.63 ? C5N NDP 602 A 1 HETATM 43 C C6N NDP . . . C 2 -11.215 -61.437 5.923 1 25.56 ? C6N NDP 602 A 1 HETATM 44 P P2B NDP . . . C 2 2.43 -63.144 8.499 1 27.79 ? P2B NDP 602 A 1 HETATM 45 O O1X NDP . . . C 2 1.909 -64.521 8.775 1 28.44 ? O1X NDP 602 A 1 HETATM 46 O O2X NDP . . . C 2 2.881 -62.843 7.066 1 31.34 ? O2X NDP 602 A 1 HETATM 47 O O3X NDP . . . C 2 3.139 -62.435 9.615 1 27.3 ? O3X NDP 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #