data_9MLM # _model_server_result.job_id xGPpmGq4k_T7H99-UnP0Zg _model_server_result.datetime_utc '2025-08-27 20:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 9MLM # _exptl.entry_id 9MLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9MLM _cell.length_a 133.496 _cell.length_b 133.496 _cell.length_c 75.317 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H21 N5 O5' _chem_comp.formula_weight 447.443 _chem_comp.id OED _chem_comp.mon_nstd_flag . _chem_comp.name '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C23 OED doub 319 n n C23 O5 OED sing 320 n n C23 C22 OED sing 321 n n C17 C18 OED doub 322 n y C17 C16 OED sing 323 n y N4 C4 OED sing 324 n n C21 O3 OED sing 325 n n C18 C19 OED sing 326 n y C22 C16 OED sing 327 n n C16 C15 OED doub 328 n y C19 O3 OED sing 329 n n C19 C20 OED doub 330 n y C4 N1 OED doub 331 n n C4 N2 OED sing 332 n n N1 C1 OED sing 333 n n C15 C20 OED sing 334 n y C15 N5 OED sing 335 n n N5 C14 OED sing 336 n n N2 C3 OED sing 337 n n C1 N3 OED sing 338 n y C1 C2 OED doub 339 n y N3 C6 OED sing 340 n y C10 C9 OED doub 341 n y C10 C11 OED sing 342 n y C3 C2 OED sing 343 n n C3 O1 OED doub 344 n n C9 C8 OED sing 345 n y C14 C11 OED sing 346 n n C14 O2 OED doub 347 n n C2 C5 OED sing 348 n y C11 C12 OED doub 349 n y C6 C5 OED doub 350 n y C5 C7 OED sing 351 n n C8 C7 OED sing 352 n n C8 C13 OED doub 353 n y C12 C13 OED sing 354 n y C6 H1 OED sing 355 n n C7 H2 OED sing 356 n n C7 H3 OED sing 357 n n C9 H4 OED sing 358 n n C10 H5 OED sing 359 n n C12 H6 OED sing 360 n n C13 H7 OED sing 361 n n C18 H8 OED sing 362 n n C20 H9 OED sing 363 n n C21 H10 OED sing 364 n n C21 H11 OED sing 365 n n C21 H12 OED sing 366 n n C22 H13 OED sing 367 n n C22 H14 OED sing 368 n n C17 H15 OED sing 369 n n N2 H16 OED sing 370 n n N3 H17 OED sing 371 n n N4 H18 OED sing 372 n n N4 H19 OED sing 373 n n N5 H20 OED sing 374 n n O5 H21 OED sing 375 n n # _atom_sites.entry_id 9MLM _atom_sites.fract_transf_matrix[1][1] 0.007491 _atom_sites.fract_transf_matrix[1][2] 0.004325 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 601 601 NDP NDP . C 2 NDP A 1 602 601 NDP NDP . D 3 OED A 1 603 602 OED OED . E 4 HOH A 1 701 4 HOH HOH . E 4 HOH A 2 702 44 HOH HOH . E 4 HOH A 3 703 29 HOH HOH . E 4 HOH A 4 704 33 HOH HOH . E 4 HOH A 5 705 45 HOH HOH . E 4 HOH A 6 706 40 HOH HOH . E 4 HOH A 7 707 13 HOH HOH . E 4 HOH A 8 708 14 HOH HOH . E 4 HOH A 9 709 15 HOH HOH . E 4 HOH A 10 710 60 HOH HOH . E 4 HOH A 11 711 61 HOH HOH . E 4 HOH A 12 712 26 HOH HOH . E 4 HOH A 13 713 6 HOH HOH . E 4 HOH A 14 714 1 HOH HOH . E 4 HOH A 15 715 63 HOH HOH . E 4 HOH A 16 716 54 HOH HOH . E 4 HOH A 17 717 7 HOH HOH . E 4 HOH A 18 718 41 HOH HOH . E 4 HOH A 19 719 17 HOH HOH . E 4 HOH A 20 720 21 HOH HOH . E 4 HOH A 21 721 19 HOH HOH . E 4 HOH A 22 722 24 HOH HOH . E 4 HOH A 23 723 38 HOH HOH . E 4 HOH A 24 724 43 HOH HOH . E 4 HOH A 25 725 51 HOH HOH . E 4 HOH A 26 726 22 HOH HOH . E 4 HOH A 27 727 18 HOH HOH . E 4 HOH A 28 728 27 HOH HOH . E 4 HOH A 29 729 34 HOH HOH . E 4 HOH A 30 730 52 HOH HOH . E 4 HOH A 31 731 55 HOH HOH . E 4 HOH A 32 732 9 HOH HOH . E 4 HOH A 33 733 46 HOH HOH . E 4 HOH A 34 734 25 HOH HOH . E 4 HOH A 35 735 58 HOH HOH . E 4 HOH A 36 736 28 HOH HOH . E 4 HOH A 37 737 23 HOH HOH . E 4 HOH A 38 738 57 HOH HOH . E 4 HOH A 39 739 30 HOH HOH . E 4 HOH A 40 740 5 HOH HOH . E 4 HOH A 41 741 49 HOH HOH . E 4 HOH A 42 742 2 HOH HOH . E 4 HOH A 43 743 12 HOH HOH . E 4 HOH A 44 744 39 HOH HOH . E 4 HOH A 45 745 62 HOH HOH . E 4 HOH A 46 746 11 HOH HOH . E 4 HOH A 47 747 20 HOH HOH . E 4 HOH A 48 748 16 HOH HOH . E 4 HOH A 49 749 10 HOH HOH . E 4 HOH A 50 750 35 HOH HOH . E 4 HOH A 51 751 31 HOH HOH . E 4 HOH A 52 752 50 HOH HOH . E 4 HOH A 53 753 42 HOH HOH . E 4 HOH A 54 754 8 HOH HOH . E 4 HOH A 55 755 32 HOH HOH . E 4 HOH A 56 756 37 HOH HOH . E 4 HOH A 57 757 47 HOH HOH . E 4 HOH A 58 758 59 HOH HOH . E 4 HOH A 59 759 56 HOH HOH . E 4 HOH A 60 760 53 HOH HOH . E 4 HOH A 61 761 3 HOH HOH . E 4 HOH A 62 762 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OED . . . D 3 -16.491 -58.42 1.328 1 31.45 ? O1 OED 603 A 1 HETATM 2 C C6 OED . . . D 3 -13.228 -57.303 4.254 1 28.67 ? C6 OED 603 A 1 HETATM 3 C C7 OED . . . D 3 -13.25 -58.693 2.069 1 36.83 ? C7 OED 603 A 1 HETATM 4 C C9 OED . . . D 3 -11.94 -57.076 0.532 1 44.88 ? C9 OED 603 A 1 HETATM 5 C C10 OED . . . D 3 -11.727 -56.459 -0.717 1 47.46 ? C10 OED 603 A 1 HETATM 6 C C11 OED . . . D 3 -12.555 -56.735 -1.764 1 50.07 ? C11 OED 603 A 1 HETATM 7 C C12 OED . . . D 3 -13.612 -57.651 -1.605 1 51.66 ? C12 OED 603 A 1 HETATM 8 C C13 OED . . . D 3 -13.825 -58.263 -0.369 1 49.75 ? C13 OED 603 A 1 HETATM 9 C C14 OED . . . D 3 -12.327 -56.077 -3.169 1 55.56 ? C14 OED 603 A 1 HETATM 10 C C15 OED . . . D 3 -12.828 -54.545 -5.069 1 62.65 ? C15 OED 603 A 1 HETATM 11 C C16 OED . . . D 3 -13.364 -55.183 -6.196 1 66.26 ? C16 OED 603 A 1 HETATM 12 C C18 OED . . . D 3 -12.159 -53.653 -7.643 1 63.55 ? C18 OED 603 A 1 HETATM 13 C C20 OED . . . D 3 -11.953 -53.469 -5.233 1 63.48 ? C20 OED 603 A 1 HETATM 14 C C21 OED . . . D 3 -9.376 -52.154 -6.452 1 43.02 ? C21 OED 603 A 1 HETATM 15 C C22 OED . . . D 3 -14.342 -56.393 -6.036 1 63.65 ? C22 OED 603 A 1 HETATM 16 C C23 OED . . . D 3 -13.651 -57.722 -6.121 1 66.77 ? C23 OED 603 A 1 HETATM 17 C C1 OED . . . D 3 -15.329 -56.723 4.439 1 24.24 ? C1 OED 603 A 1 HETATM 18 C C17 OED . . . D 3 -13.028 -54.729 -7.48 1 63.58 ? C17 OED 603 A 1 HETATM 19 C C19 OED . . . D 3 -11.616 -53.022 -6.533 1 61.42 ? C19 OED 603 A 1 HETATM 20 C C2 OED . . . D 3 -15.263 -57.468 3.272 1 23.86 ? C2 OED 603 A 1 HETATM 21 C C3 OED . . . D 3 -16.446 -57.651 2.564 1 28.46 ? C3 OED 603 A 1 HETATM 22 C C4 OED . . . D 3 -17.594 -56.396 4.147 1 26.08 ? C4 OED 603 A 1 HETATM 23 C C5 OED . . . D 3 -13.897 -57.833 3.159 1 30.76 ? C5 OED 603 A 1 HETATM 24 C C8 OED . . . D 3 -13.001 -57.972 0.696 1 42.01 ? C8 OED 603 A 1 HETATM 25 N N1 OED . . . D 3 -16.51 -56.198 4.847 1 24.83 ? N1 OED 603 A 1 HETATM 26 N N2 OED . . . D 3 -17.585 -57.106 3.029 1 25.18 ? N2 OED 603 A 1 HETATM 27 N N3 OED . . . D 3 -14.122 -56.64 4.998 1 27.4 ? N3 OED 603 A 1 HETATM 28 N N4 OED . . . D 3 -18.837 -55.832 4.601 1 24.31 ? N4 OED 603 A 1 HETATM 29 N N5 OED . . . D 3 -13.182 -55.036 -3.719 1 60.3 ? N5 OED 603 A 1 HETATM 30 O O2 OED . . . D 3 -11.452 -56.45 -3.802 1 60.71 ? O2 OED 603 A 1 HETATM 31 O O3 OED . . . D 3 -10.727 -51.911 -6.72 1 60.49 ? O3 OED 603 A 1 HETATM 32 O O4 OED . . . D 3 -12.383 -57.788 -6.046 1 67.19 ? O4 OED 603 A 1 HETATM 33 O O5 OED . . . D 3 -14.323 -58.79 -6.27 1 67.86 -1 O5 OED 603 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #