data_9MLT # _model_server_result.job_id Qi65j4n-qhRf4_bLAJY7GA _model_server_result.datetime_utc '2025-08-28 00:13:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mlt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9MLT # _exptl.entry_id 9MLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9MLT _cell.length_a 134.013 _cell.length_b 134.013 _cell.length_c 75.56 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 9MLT _atom_sites.fract_transf_matrix[1][1] 0.007462 _atom_sites.fract_transf_matrix[1][2] 0.004308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 301 NAP NAP . C 3 OFD A 1 302 302 OFD OFD . D 4 HOH A 1 401 117 HOH HOH . D 4 HOH A 2 402 41 HOH HOH . D 4 HOH A 3 403 128 HOH HOH . D 4 HOH A 4 404 2 HOH HOH . D 4 HOH A 5 405 24 HOH HOH . D 4 HOH A 6 406 27 HOH HOH . D 4 HOH A 7 407 79 HOH HOH . D 4 HOH A 8 408 11 HOH HOH . D 4 HOH A 9 409 53 HOH HOH . D 4 HOH A 10 410 162 HOH HOH . D 4 HOH A 11 411 61 HOH HOH . D 4 HOH A 12 412 22 HOH HOH . D 4 HOH A 13 413 4 HOH HOH . D 4 HOH A 14 414 21 HOH HOH . D 4 HOH A 15 415 29 HOH HOH . D 4 HOH A 16 416 65 HOH HOH . D 4 HOH A 17 417 100 HOH HOH . D 4 HOH A 18 418 8 HOH HOH . D 4 HOH A 19 419 26 HOH HOH . D 4 HOH A 20 420 54 HOH HOH . D 4 HOH A 21 421 51 HOH HOH . D 4 HOH A 22 422 10 HOH HOH . D 4 HOH A 23 423 14 HOH HOH . D 4 HOH A 24 424 131 HOH HOH . D 4 HOH A 25 425 143 HOH HOH . D 4 HOH A 26 426 114 HOH HOH . D 4 HOH A 27 427 17 HOH HOH . D 4 HOH A 28 428 127 HOH HOH . D 4 HOH A 29 429 64 HOH HOH . D 4 HOH A 30 430 37 HOH HOH . D 4 HOH A 31 431 68 HOH HOH . D 4 HOH A 32 432 218 HOH HOH . D 4 HOH A 33 433 28 HOH HOH . D 4 HOH A 34 434 220 HOH HOH . D 4 HOH A 35 435 102 HOH HOH . D 4 HOH A 36 436 75 HOH HOH . D 4 HOH A 37 437 16 HOH HOH . D 4 HOH A 38 438 25 HOH HOH . D 4 HOH A 39 439 50 HOH HOH . D 4 HOH A 40 440 145 HOH HOH . D 4 HOH A 41 441 43 HOH HOH . D 4 HOH A 42 442 78 HOH HOH . D 4 HOH A 43 443 67 HOH HOH . D 4 HOH A 44 444 225 HOH HOH . D 4 HOH A 45 445 71 HOH HOH . D 4 HOH A 46 446 19 HOH HOH . D 4 HOH A 47 447 20 HOH HOH . D 4 HOH A 48 448 190 HOH HOH . D 4 HOH A 49 449 3 HOH HOH . D 4 HOH A 50 450 83 HOH HOH . D 4 HOH A 51 451 47 HOH HOH . D 4 HOH A 52 452 35 HOH HOH . D 4 HOH A 53 453 74 HOH HOH . D 4 HOH A 54 454 55 HOH HOH . D 4 HOH A 55 455 6 HOH HOH . D 4 HOH A 56 456 5 HOH HOH . D 4 HOH A 57 457 38 HOH HOH . D 4 HOH A 58 458 7 HOH HOH . D 4 HOH A 59 459 251 HOH HOH . D 4 HOH A 60 460 23 HOH HOH . D 4 HOH A 61 461 144 HOH HOH . D 4 HOH A 62 462 15 HOH HOH . D 4 HOH A 63 463 160 HOH HOH . D 4 HOH A 64 464 316 HOH HOH . D 4 HOH A 65 465 174 HOH HOH . D 4 HOH A 66 466 30 HOH HOH . D 4 HOH A 67 467 126 HOH HOH . D 4 HOH A 68 468 330 HOH HOH . D 4 HOH A 69 469 193 HOH HOH . D 4 HOH A 70 470 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -5.565 -62.353 8.323 1 42.78 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 -5.591 -61.669 9.66 1 46.58 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 -6.177 -61.765 7.09 1 45.39 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 -3.982 -62.641 8.031 1 45.56 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 -3.243 -63.244 9.067 1 42.33 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 -1.79 -62.858 8.86 1 48.38 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 -1.653 -61.434 8.955 1 45.75 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 -0.822 -63.455 9.902 1 47.96 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 -0.396 -64.757 9.616 1 47.45 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 0.297 -62.403 9.796 1 48.07 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 0.864 -62.548 8.542 1 47.31 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 -0.504 -61.109 9.692 1 46.54 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 -0.818 -60.486 10.965 1 50.98 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 -1.977 -60.507 11.697 1 51.95 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 -1.894 -59.821 12.799 1 53.61 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 -0.615 -59.322 12.806 1 54.41 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 0.102 -58.51 13.712 1 58.76 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 -0.432 -58.046 14.849 1 53.04 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 1.371 -58.197 13.408 1 50.65 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 1.898 -58.662 12.276 1 50.31 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 1.329 -59.425 11.357 1 46.91 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 0.069 -59.726 11.671 1 52.63 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 -6.052 -63.926 8.434 1 43.19 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 -7.473 -64.674 8.782 1 48.8 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 -7.361 -66.101 8.38 1 49.15 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 -7.922 -64.287 10.155 1 44.94 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 -8.465 -63.922 7.708 1 50.91 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 -8.431 -64.213 6.343 1 53.28 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 -9.555 -65.163 5.966 1 49.14 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 -10.815 -64.569 6.355 1 50.15 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 -9.702 -65.373 4.481 1 52.47 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 -10.478 -66.54 4.365 1 47.11 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 -10.49 -64.11 4.09 1 52.71 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 -11.144 -64.197 2.865 1 45.47 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 -11.492 -64.071 5.259 1 50.39 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 -12.064 -62.725 5.614 1 48.73 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 -13.378 -62.478 5.499 1 48 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 -13.928 -61.257 5.843 1 49.21 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 -15.409 -60.976 5.712 1 43.73 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 -15.833 -59.851 5.923 1 41.69 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 -16.185 -62.018 5.39 1 37.79 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 -13.07 -60.272 6.335 1 46.82 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 -11.714 -60.547 6.461 1 46.9 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 -11.235 -61.791 6.103 1 45.49 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 2.32 -63.454 8.387 1 48.96 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 1.855 -64.894 8.57 1 49.21 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 3.111 -62.812 9.514 1 47.8 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 2.776 -63.101 6.978 1 49.74 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #