data_9MON # _model_server_result.job_id z7oc0nn5dF3Ogh_ODDcEUw _model_server_result.datetime_utc '2025-07-04 21:49:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":401}' # _entry.id 9MON # _exptl.entry_id 9MON _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 R N N ? 6 T N N ? 6 V N N ? 6 X N N ? 6 Z N N ? 6 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 139 A GLN 137 1_555 Q MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc2 P O1B ADP . A ADP 401 1_555 Q MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 B OE1 GLN 139 B GLN 137 1_555 S MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc4 R O1B ADP . B ADP 401 1_555 S MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc5 C OE1 GLN 139 C GLN 137 1_555 U MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc6 T O1B ADP . C ADP 401 1_555 U MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc7 D OE1 GLN 139 D GLN 137 1_555 W MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc8 V O1B ADP . D ADP 401 1_555 W MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc9 E OE1 GLN 139 E GLN 137 1_555 Y MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc10 X O1B ADP . E ADP 401 1_555 Y MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc11 F OE1 GLN 139 F GLN 137 1_555 AA MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc12 Z O1B ADP . F ADP 401 1_555 AA MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc13 G OE1 GLN 139 G GLN 137 1_555 CA MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc14 BA O1B ADP . G ADP 401 1_555 CA MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc15 H OD2 ASP 65 H ASP 65 1_555 DA CA CA . H CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc16 H OD1 ASP 67 H ASP 67 1_555 DA CA CA . H CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc17 H OG SER 69 H SER 69 1_555 DA CA CA . H CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc18 H O THR 71 H THR 71 1_555 DA CA CA . H CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc19 H OE1 GLU 76 H GLU 76 1_555 DA CA CA . H CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc20 H OD1 ASP 105 H ASP 105 1_555 FA CA CA . H CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc21 H OD1 ASN 107 H ASN 107 1_555 FA CA CA . H CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc22 H O TYR 111 H TYR 111 1_555 FA CA CA . H CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc23 H OE1 GLU 116 H GLU 116 1_555 FA CA CA . H CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc24 H OD1 ASP 145 H ASP 145 1_555 EA CA CA . H CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc25 H OE1 GLU 152 H GLU 152 1_555 EA CA CA . H CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc26 H OE2 GLU 152 H GLU 152 1_555 EA CA CA . H CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 9MON _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 6 ADP A 1 401 401 ADP ADP . Q 7 MG A 1 402 402 MG MG . R 6 ADP B 1 401 401 ADP ADP . S 7 MG B 1 402 402 MG MG . T 6 ADP C 1 401 401 ADP ADP . U 7 MG C 1 402 402 MG MG . V 6 ADP D 1 401 401 ADP ADP . W 7 MG D 1 402 402 MG MG . X 6 ADP E 1 401 401 ADP ADP . Y 7 MG E 1 402 402 MG MG . Z 6 ADP F 1 401 401 ADP ADP . AA 7 MG F 1 402 402 MG MG . BA 6 ADP G 1 401 401 ADP ADP . CA 7 MG G 1 402 402 MG MG . DA 8 CA H 1 201 201 CA CA . EA 8 CA H 1 202 202 CA CA . FA 8 CA H 1 203 203 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . P 6 230.577 224.843 47.451 1 11.99 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . P 6 230.537 224.354 46.027 1 11.99 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . P 6 231.617 225.89 47.712 1 11.99 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . P 6 229.234 225.125 48.067 1 11.99 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . P 6 232.659 223.438 48.626 1 11.99 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . P 6 233.434 223.217 47.363 1 11.99 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . P 6 233.028 224.523 49.584 1 11.99 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . P 6 231.105 223.586 48.284 1 11.99 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . P 6 232.628 222.07 49.442 1 11.99 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . P 6 232.893 222.054 50.834 1 11.99 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . P 6 232.517 220.666 51.315 1 11.99 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . P 6 233.458 219.738 50.792 1 11.99 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . P 6 232.553 220.543 52.816 1 11.99 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . P 6 231.216 220.504 53.302 1 11.99 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . P 6 233.229 219.223 53.079 1 11.99 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . P 6 232.229 218.256 53.403 1 11.99 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . P 6 233.88 218.813 51.781 1 11.99 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . P 6 235.336 218.967 51.938 1 11.99 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . P 6 235.975 220.14 51.999 1 11.99 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . P 6 237.305 219.964 52.152 1 11.99 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . P 6 237.529 218.65 52.197 1 11.99 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . P 6 238.712 217.788 52.343 1 11.99 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . P 6 239.947 218.321 52.478 1 11.99 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . P 6 238.514 216.461 52.341 1 11.99 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . P 6 237.293 215.937 52.209 1 11.99 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . P 6 236.173 216.655 52.068 1 11.99 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . P 6 236.227 217.997 52.056 1 11.99 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 93 _model_server_stats.query_time_ms 956 _model_server_stats.encode_time_ms 46 _model_server_stats.element_count 27 #