data_9MP8
#
_model_server_result.job_id            KnVgvyItDuajuGHJHoInaw 
_model_server_result.datetime_utc      '2025-06-26 21:46:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    9MP8 
#
_exptl.entry_id    9MP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MP8 
_cell.length_a            77.829 
_cell.length_b            77.829 
_cell.length_c            38.197 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 48 A CYS 48 1_555 A SG CYS 133 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 A SG CYS 82 A CYS 82 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 A SG CYS 94 A CYS 94 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc1 A O SER 78 A SER 78 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc2 A O CYS 82 A CYS 82 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 A OG SER 90 A SER 90 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc4 A O ARG 91 A ARG 91 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc5 G NA NA . A NA 206 1_555 H O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc6 G NA NA . A NA 206 1_555 H O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NDG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDG sing 237 n n 
C1 O5 NDG sing 238 n n 
C1 O1 NDG sing 239 n n 
C1 H1 NDG sing 240 n n 
C2 C3 NDG sing 241 n n 
C2 N2 NDG sing 242 n n 
C2 H2 NDG sing 243 n n 
C3 C4 NDG sing 244 n n 
C3 O3 NDG sing 245 n n 
C3 H3 NDG sing 246 n n 
C4 C5 NDG sing 247 n n 
C4 O4 NDG sing 248 n n 
C4 H4 NDG sing 249 n n 
C5 C6 NDG sing 250 n n 
C5 O5 NDG sing 251 n n 
C5 H5 NDG sing 252 n n 
C6 O6 NDG sing 253 n n 
C6 H61 NDG sing 254 n n 
C6 H62 NDG sing 255 n n 
C7 C8 NDG sing 256 n n 
C7 O7 NDG doub 257 n n 
C7 N2 NDG sing 258 n n 
C8 H81 NDG sing 259 n n 
C8 H82 NDG sing 260 n n 
C8 H83 NDG sing 261 n n 
O3 HO3 NDG sing 262 n n 
O4 HO4 NDG sing 263 n n 
O6 HO6 NDG sing 264 n n 
N2 HN2 NDG sing 265 n n 
O1 HO1 NDG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 
NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9MP8 
_atom_sites.fract_transf_matrix[1][1]    0.012849 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDG A 1 201 201 NDG NDG . 
C 3 CL A 1 202 202 CL CL . 
D 3 CL A 1 203 203 CL CL . 
E 3 CL A 1 204 204 CL CL . 
F 3 CL A 1 205 205 CL CL . 
G 4 NA A 1 206 206 NA NA . 
H 5 HOH A 1 301 56 HOH HOH . 
H 5 HOH A 2 302 33 HOH HOH . 
H 5 HOH A 3 303 53 HOH HOH . 
H 5 HOH A 4 304 83 HOH HOH . 
H 5 HOH A 5 305 21 HOH HOH . 
H 5 HOH A 6 306 91 HOH HOH . 
H 5 HOH A 7 307 10 HOH HOH . 
H 5 HOH A 8 308 100 HOH HOH . 
H 5 HOH A 9 309 35 HOH HOH . 
H 5 HOH A 10 310 13 HOH HOH . 
H 5 HOH A 11 311 20 HOH HOH . 
H 5 HOH A 12 312 69 HOH HOH . 
H 5 HOH A 13 313 105 HOH HOH . 
H 5 HOH A 14 314 45 HOH HOH . 
H 5 HOH A 15 315 109 HOH HOH . 
H 5 HOH A 16 316 110 HOH HOH . 
H 5 HOH A 17 317 73 HOH HOH . 
H 5 HOH A 18 318 77 HOH HOH . 
H 5 HOH A 19 319 15 HOH HOH . 
H 5 HOH A 20 320 97 HOH HOH . 
H 5 HOH A 21 321 50 HOH HOH . 
H 5 HOH A 22 322 26 HOH HOH . 
H 5 HOH A 23 323 40 HOH HOH . 
H 5 HOH A 24 324 78 HOH HOH . 
H 5 HOH A 25 325 31 HOH HOH . 
H 5 HOH A 26 326 19 HOH HOH . 
H 5 HOH A 27 327 42 HOH HOH . 
H 5 HOH A 28 328 3 HOH HOH . 
H 5 HOH A 29 329 106 HOH HOH . 
H 5 HOH A 30 330 88 HOH HOH . 
H 5 HOH A 31 331 30 HOH HOH . 
H 5 HOH A 32 332 12 HOH HOH . 
H 5 HOH A 33 333 25 HOH HOH . 
H 5 HOH A 34 334 34 HOH HOH . 
H 5 HOH A 35 335 65 HOH HOH . 
H 5 HOH A 36 336 62 HOH HOH . 
H 5 HOH A 37 337 64 HOH HOH . 
H 5 HOH A 38 338 80 HOH HOH . 
H 5 HOH A 39 339 9 HOH HOH . 
H 5 HOH A 40 340 82 HOH HOH . 
H 5 HOH A 41 341 79 HOH HOH . 
H 5 HOH A 42 342 28 HOH HOH . 
H 5 HOH A 43 343 99 HOH HOH . 
H 5 HOH A 44 344 98 HOH HOH . 
H 5 HOH A 45 345 36 HOH HOH . 
H 5 HOH A 46 346 22 HOH HOH . 
H 5 HOH A 47 347 38 HOH HOH . 
H 5 HOH A 48 348 71 HOH HOH . 
H 5 HOH A 49 349 94 HOH HOH . 
H 5 HOH A 50 350 8 HOH HOH . 
H 5 HOH A 51 351 2 HOH HOH . 
H 5 HOH A 52 352 1 HOH HOH . 
H 5 HOH A 53 353 51 HOH HOH . 
H 5 HOH A 54 354 5 HOH HOH . 
H 5 HOH A 55 355 85 HOH HOH . 
H 5 HOH A 56 356 32 HOH HOH . 
H 5 HOH A 57 357 24 HOH HOH . 
H 5 HOH A 58 358 4 HOH HOH . 
H 5 HOH A 59 359 7 HOH HOH . 
H 5 HOH A 60 360 96 HOH HOH . 
H 5 HOH A 61 361 14 HOH HOH . 
H 5 HOH A 62 362 47 HOH HOH . 
H 5 HOH A 63 363 54 HOH HOH . 
H 5 HOH A 64 364 23 HOH HOH . 
H 5 HOH A 65 365 112 HOH HOH . 
H 5 HOH A 66 366 84 HOH HOH . 
H 5 HOH A 67 367 52 HOH HOH . 
H 5 HOH A 68 368 11 HOH HOH . 
H 5 HOH A 69 369 72 HOH HOH . 
H 5 HOH A 70 370 18 HOH HOH . 
H 5 HOH A 71 371 39 HOH HOH . 
H 5 HOH A 72 372 66 HOH HOH . 
H 5 HOH A 73 373 101 HOH HOH . 
H 5 HOH A 74 374 43 HOH HOH . 
H 5 HOH A 75 375 81 HOH HOH . 
H 5 HOH A 76 376 44 HOH HOH . 
H 5 HOH A 77 377 75 HOH HOH . 
H 5 HOH A 78 378 92 HOH HOH . 
H 5 HOH A 79 379 6 HOH HOH . 
H 5 HOH A 80 380 87 HOH HOH . 
H 5 HOH A 81 381 86 HOH HOH . 
H 5 HOH A 82 382 27 HOH HOH . 
H 5 HOH A 83 383 60 HOH HOH . 
H 5 HOH A 84 384 76 HOH HOH . 
H 5 HOH A 85 385 90 HOH HOH . 
H 5 HOH A 86 386 63 HOH HOH . 
H 5 HOH A 87 387 108 HOH HOH . 
H 5 HOH A 88 388 57 HOH HOH . 
H 5 HOH A 89 389 93 HOH HOH . 
H 5 HOH A 90 390 74 HOH HOH . 
H 5 HOH A 91 391 67 HOH HOH . 
H 5 HOH A 92 392 29 HOH HOH . 
H 5 HOH A 93 393 48 HOH HOH . 
H 5 HOH A 94 394 107 HOH HOH . 
H 5 HOH A 95 395 68 HOH HOH . 
H 5 HOH A 96 396 89 HOH HOH . 
H 5 HOH A 97 397 70 HOH HOH . 
H 5 HOH A 98 398 16 HOH HOH . 
H 5 HOH A 99 399 41 HOH HOH . 
H 5 HOH A 100 400 95 HOH HOH . 
H 5 HOH A 101 401 55 HOH HOH . 
H 5 HOH A 102 402 37 HOH HOH . 
H 5 HOH A 103 403 59 HOH HOH . 
H 5 HOH A 104 404 61 HOH HOH . 
H 5 HOH A 105 405 46 HOH HOH . 
H 5 HOH A 106 406 102 HOH HOH . 
H 5 HOH A 107 407 49 HOH HOH . 
H 5 HOH A 108 408 111 HOH HOH . 
H 5 HOH A 109 409 103 HOH HOH . 
H 5 HOH A 110 410 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDG . . . B 2 -5.607 -23.561 2.98 0.9 19.85 ? C1 NDG 201 A 1 
HETATM 2 C C2 NDG . . . B 2 -5.418 -23.266 4.473 0.9 18.86 ? C2 NDG 201 A 1 
HETATM 3 C C3 NDG . . . B 2 -6.329 -24.151 5.35 0.9 19.11 ? C3 NDG 201 A 1 
HETATM 4 C C4 NDG . . . B 2 -7.786 -24.267 4.844 0.9 21.35 ? C4 NDG 201 A 1 
HETATM 5 C C5 NDG . . . B 2 -7.861 -24.431 3.327 0.9 22.73 ? C5 NDG 201 A 1 
HETATM 6 C C6 NDG . . . B 2 -9.271 -24.269 2.773 0.9 26.58 ? C6 NDG 201 A 1 
HETATM 7 C C7 NDG . . . B 2 -3.333 -22.442 5.575 0.9 19.61 ? C7 NDG 201 A 1 
HETATM 8 C C8 NDG . . . B 2 -1.885 -22.771 5.848 0.9 16.14 ? C8 NDG 201 A 1 
HETATM 9 O O5 NDG . . . B 2 -6.945 -23.624 2.58 0.9 19.31 ? O5 NDG 201 A 1 
HETATM 10 O O3 NDG . . . B 2 -6.272 -23.626 6.65 0.9 20.65 ? O3 NDG 201 A 1 
HETATM 11 O O4 NDG . . . B 2 -8.435 -25.331 5.492 0.9 23.78 ? O4 NDG 201 A 1 
HETATM 12 O O6 NDG . . . B 2 -9.297 -24.7 1.434 0.9 27.36 ? O6 NDG 201 A 1 
HETATM 13 O O7 NDG . . . B 2 -3.814 -21.389 5.982 0.9 18.7 ? O7 NDG 201 A 1 
HETATM 14 N N2 NDG . . . B 2 -4.025 -23.374 4.865 0.9 18.75 ? N2 NDG 201 A 1 
HETATM 15 O O1 NDG . . . B 2 -4.953 -24.788 2.724 0.9 22.46 ? O1 NDG 201 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#