data_9MPA
#
_model_server_result.job_id            ZA3Hfh2gZhqih90HRLmqag 
_model_server_result.datetime_utc      '2025-08-22 03:04:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mpa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    9MPA 
#
_exptl.entry_id    9MPA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MPA 
_cell.length_a            77.821 
_cell.length_b            77.821 
_cell.length_c            37.745 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MPA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 48 A CYS 48 1_555 A SG CYS 133 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 A SG CYS 82 A CYS 82 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 94 A CYS 94 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A O SER 78 A SER 78 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc2 A O CYS 82 A CYS 82 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc3 A OG SER 90 A SER 90 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc4 A O ARG 91 A ARG 91 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc5 G NA NA . A NA 206 1_555 H O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc6 G NA NA . A NA 206 1_555 H O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NDG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDG sing 237 n n 
C1 O5 NDG sing 238 n n 
C1 O1 NDG sing 239 n n 
C1 H1 NDG sing 240 n n 
C2 C3 NDG sing 241 n n 
C2 N2 NDG sing 242 n n 
C2 H2 NDG sing 243 n n 
C3 C4 NDG sing 244 n n 
C3 O3 NDG sing 245 n n 
C3 H3 NDG sing 246 n n 
C4 C5 NDG sing 247 n n 
C4 O4 NDG sing 248 n n 
C4 H4 NDG sing 249 n n 
C5 C6 NDG sing 250 n n 
C5 O5 NDG sing 251 n n 
C5 H5 NDG sing 252 n n 
C6 O6 NDG sing 253 n n 
C6 H61 NDG sing 254 n n 
C6 H62 NDG sing 255 n n 
C7 C8 NDG sing 256 n n 
C7 O7 NDG doub 257 n n 
C7 N2 NDG sing 258 n n 
C8 H81 NDG sing 259 n n 
C8 H82 NDG sing 260 n n 
C8 H83 NDG sing 261 n n 
O3 HO3 NDG sing 262 n n 
O4 HO4 NDG sing 263 n n 
O6 HO6 NDG sing 264 n n 
N2 HN2 NDG sing 265 n n 
O1 HO1 NDG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 
NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9MPA 
_atom_sites.fract_transf_matrix[1][1]    0.01285 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026494 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDG A 1 201 201 NDG NDG . 
C 3 CL A 1 202 202 CL CL . 
D 3 CL A 1 203 203 CL CL . 
E 3 CL A 1 204 204 CL CL . 
F 3 CL A 1 205 205 CL CL . 
G 4 NA A 1 206 206 NA NA . 
H 5 HOH A 1 301 38 HOH HOH . 
H 5 HOH A 2 302 57 HOH HOH . 
H 5 HOH A 3 303 72 HOH HOH . 
H 5 HOH A 4 304 26 HOH HOH . 
H 5 HOH A 5 305 60 HOH HOH . 
H 5 HOH A 6 306 65 HOH HOH . 
H 5 HOH A 7 307 22 HOH HOH . 
H 5 HOH A 8 308 33 HOH HOH . 
H 5 HOH A 9 309 53 HOH HOH . 
H 5 HOH A 10 310 18 HOH HOH . 
H 5 HOH A 11 311 11 HOH HOH . 
H 5 HOH A 12 312 23 HOH HOH . 
H 5 HOH A 13 313 41 HOH HOH . 
H 5 HOH A 14 314 29 HOH HOH . 
H 5 HOH A 15 315 14 HOH HOH . 
H 5 HOH A 16 316 2 HOH HOH . 
H 5 HOH A 17 317 21 HOH HOH . 
H 5 HOH A 18 318 17 HOH HOH . 
H 5 HOH A 19 319 36 HOH HOH . 
H 5 HOH A 20 320 66 HOH HOH . 
H 5 HOH A 21 321 50 HOH HOH . 
H 5 HOH A 22 322 47 HOH HOH . 
H 5 HOH A 23 323 31 HOH HOH . 
H 5 HOH A 24 324 54 HOH HOH . 
H 5 HOH A 25 325 34 HOH HOH . 
H 5 HOH A 26 326 58 HOH HOH . 
H 5 HOH A 27 327 44 HOH HOH . 
H 5 HOH A 28 328 55 HOH HOH . 
H 5 HOH A 29 329 7 HOH HOH . 
H 5 HOH A 30 330 27 HOH HOH . 
H 5 HOH A 31 331 6 HOH HOH . 
H 5 HOH A 32 332 3 HOH HOH . 
H 5 HOH A 33 333 20 HOH HOH . 
H 5 HOH A 34 334 28 HOH HOH . 
H 5 HOH A 35 335 64 HOH HOH . 
H 5 HOH A 36 336 39 HOH HOH . 
H 5 HOH A 37 337 24 HOH HOH . 
H 5 HOH A 38 338 37 HOH HOH . 
H 5 HOH A 39 339 9 HOH HOH . 
H 5 HOH A 40 340 67 HOH HOH . 
H 5 HOH A 41 341 40 HOH HOH . 
H 5 HOH A 42 342 79 HOH HOH . 
H 5 HOH A 43 343 63 HOH HOH . 
H 5 HOH A 44 344 42 HOH HOH . 
H 5 HOH A 45 345 71 HOH HOH . 
H 5 HOH A 46 346 52 HOH HOH . 
H 5 HOH A 47 347 16 HOH HOH . 
H 5 HOH A 48 348 12 HOH HOH . 
H 5 HOH A 49 349 1 HOH HOH . 
H 5 HOH A 50 350 46 HOH HOH . 
H 5 HOH A 51 351 32 HOH HOH . 
H 5 HOH A 52 352 5 HOH HOH . 
H 5 HOH A 53 353 35 HOH HOH . 
H 5 HOH A 54 354 13 HOH HOH . 
H 5 HOH A 55 355 4 HOH HOH . 
H 5 HOH A 56 356 77 HOH HOH . 
H 5 HOH A 57 357 51 HOH HOH . 
H 5 HOH A 58 358 62 HOH HOH . 
H 5 HOH A 59 359 10 HOH HOH . 
H 5 HOH A 60 360 49 HOH HOH . 
H 5 HOH A 61 361 56 HOH HOH . 
H 5 HOH A 62 362 87 HOH HOH . 
H 5 HOH A 63 363 8 HOH HOH . 
H 5 HOH A 64 364 25 HOH HOH . 
H 5 HOH A 65 365 15 HOH HOH . 
H 5 HOH A 66 366 73 HOH HOH . 
H 5 HOH A 67 367 91 HOH HOH . 
H 5 HOH A 68 368 59 HOH HOH . 
H 5 HOH A 69 369 30 HOH HOH . 
H 5 HOH A 70 370 68 HOH HOH . 
H 5 HOH A 71 371 19 HOH HOH . 
H 5 HOH A 72 372 88 HOH HOH . 
H 5 HOH A 73 373 69 HOH HOH . 
H 5 HOH A 74 374 43 HOH HOH . 
H 5 HOH A 75 375 76 HOH HOH . 
H 5 HOH A 76 376 80 HOH HOH . 
H 5 HOH A 77 377 81 HOH HOH . 
H 5 HOH A 78 378 89 HOH HOH . 
H 5 HOH A 79 379 61 HOH HOH . 
H 5 HOH A 80 380 82 HOH HOH . 
H 5 HOH A 81 381 75 HOH HOH . 
H 5 HOH A 82 382 45 HOH HOH . 
H 5 HOH A 83 383 86 HOH HOH . 
H 5 HOH A 84 384 74 HOH HOH . 
H 5 HOH A 85 385 85 HOH HOH . 
H 5 HOH A 86 386 90 HOH HOH . 
H 5 HOH A 87 387 83 HOH HOH . 
H 5 HOH A 88 388 78 HOH HOH . 
H 5 HOH A 89 389 48 HOH HOH . 
H 5 HOH A 90 390 84 HOH HOH . 
H 5 HOH A 91 391 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDG . . . B 2 -5.662 -23.693 2.822 0.97 19.44 ? C1 NDG 201 A 1 
HETATM 2 C C2 NDG . . . B 2 -5.484 -23.442 4.327 0.97 20.6 ? C2 NDG 201 A 1 
HETATM 3 C C3 NDG . . . B 2 -6.402 -24.334 5.193 0.97 20.76 ? C3 NDG 201 A 1 
HETATM 4 C C4 NDG . . . B 2 -7.856 -24.413 4.671 0.97 22.28 ? C4 NDG 201 A 1 
HETATM 5 C C5 NDG . . . B 2 -7.921 -24.555 3.147 0.97 22.53 ? C5 NDG 201 A 1 
HETATM 6 C C6 NDG . . . B 2 -9.32 -24.43 2.55 0.97 24.55 ? C6 NDG 201 A 1 
HETATM 7 C C7 NDG . . . B 2 -3.456 -22.644 5.481 0.97 20.93 ? C7 NDG 201 A 1 
HETATM 8 C C8 NDG . . . B 2 -2.007 -22.943 5.798 0.97 20.23 ? C8 NDG 201 A 1 
HETATM 9 O O5 NDG . . . B 2 -7.01 -23.708 2.445 0.97 20.33 ? O5 NDG 201 A 1 
HETATM 10 O O3 NDG . . . B 2 -6.324 -23.851 6.513 0.97 24.11 ? O3 NDG 201 A 1 
HETATM 11 O O4 NDG . . . B 2 -8.569 -25.439 5.31 0.97 20.62 ? O4 NDG 201 A 1 
HETATM 12 O O6 NDG . . . B 2 -9.326 -24.858 1.2 0.97 26.54 ? O6 NDG 201 A 1 
HETATM 13 O O7 NDG . . . B 2 -3.986 -21.619 5.889 0.97 20.85 ? O7 NDG 201 A 1 
HETATM 14 N N2 NDG . . . B 2 -4.105 -23.562 4.734 0.97 19.76 ? N2 NDG 201 A 1 
HETATM 15 O O1 NDG . . . B 2 -5.051 -24.927 2.507 0.97 20.78 ? O1 NDG 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#