data_9MS1 # _model_server_result.job_id VXQfcQeEIfZRuhUtCK7kMg _model_server_result.datetime_utc '2025-06-18 03:30:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ms1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9MS1 # _exptl.entry_id 9MS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.874 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N'-(2-chlorophenyl)-N-[(3-hydroxyphenyl)methyl]-N-[(2P)-2-(1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]urea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MS1 _cell.length_a 75.772 _cell.length_b 100.654 _cell.length_c 121.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N33 A1BNX . A A1BNX 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C24 H18 Cl F3 N4 O2' _chem_comp.formula_weight 486.874 _chem_comp.id A1BNX _chem_comp.mon_nstd_flag . _chem_comp.name "N'-(2-chlorophenyl)-N-[(3-hydroxyphenyl)methyl]-N-[(2P)-2-(1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C17 A1BNX sing 1 n n C17 C16 A1BNX doub 2 n y C17 C19 A1BNX sing 3 n y N33 C34 A1BNX doub 4 n y N33 C32 A1BNX sing 5 n y C16 C15 A1BNX sing 6 n y C19 C13 A1BNX doub 7 n y C34 N30 A1BNX sing 8 n y C15 C14 A1BNX doub 9 n y C32 C31 A1BNX doub 10 n y C13 C14 A1BNX sing 11 n y C13 C12 A1BNX sing 12 n n C12 N11 A1BNX sing 13 n n N30 C31 A1BNX sing 14 n y N30 C29 A1BNX sing 15 n n C29 C28 A1BNX doub 16 n y C29 C20 A1BNX sing 17 n y C28 C27 A1BNX sing 18 n y N11 C20 A1BNX sing 19 n n N11 C02 A1BNX sing 20 n n C20 C21 A1BNX doub 21 n y C27 C22 A1BNX doub 22 n y C21 C22 A1BNX sing 23 n y C22 C23 A1BNX sing 24 n n O01 C02 A1BNX doub 25 n n C02 N03 A1BNX sing 26 n n F24 C23 A1BNX sing 27 n n C23 F25 A1BNX sing 28 n n C23 F26 A1BNX sing 29 n n N03 C04 A1BNX sing 30 n n CL10 C09 A1BNX sing 31 n n C04 C09 A1BNX doub 32 n y C04 C05 A1BNX sing 33 n y C09 C08 A1BNX sing 34 n y C05 C06 A1BNX doub 35 n y C08 C07 A1BNX doub 36 n y C06 C07 A1BNX sing 37 n y C12 H1 A1BNX sing 38 n n C12 H2 A1BNX sing 39 n n C14 H3 A1BNX sing 40 n n C15 H4 A1BNX sing 41 n n C16 H5 A1BNX sing 42 n n C21 H6 A1BNX sing 43 n n C05 H7 A1BNX sing 44 n n C06 H8 A1BNX sing 45 n n C07 H9 A1BNX sing 46 n n C08 H10 A1BNX sing 47 n n C19 H11 A1BNX sing 48 n n C27 H12 A1BNX sing 49 n n C28 H13 A1BNX sing 50 n n C31 H14 A1BNX sing 51 n n C32 H15 A1BNX sing 52 n n C34 H16 A1BNX sing 53 n n N03 H17 A1BNX sing 54 n n O18 H18 A1BNX sing 55 n n # _atom_sites.entry_id 9MS1 _atom_sites.fract_transf_matrix[1][1] 0.013197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 501 HEM HEM . C 3 A1BNX A 1 602 502 A1BNX S11 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 A1BNX . . . C 3 16.423 19.255 8.513 1 106.36 ? C12 A1BNX 602 A 1 HETATM 2 C C13 A1BNX . . . C 3 15.855 20.502 9.186 1 101.43 ? C13 A1BNX 602 A 1 HETATM 3 C C14 A1BNX . . . C 3 16.668 21.272 9.997 1 98.21 ? C14 A1BNX 602 A 1 HETATM 4 C C15 A1BNX . . . C 3 16.15 22.398 10.614 1 101.7 ? C15 A1BNX 602 A 1 HETATM 5 C C16 A1BNX . . . C 3 14.822 22.741 10.428 1 105.74 ? C16 A1BNX 602 A 1 HETATM 6 C C21 A1BNX . . . C 3 15.932 19.868 5.521 1 103.37 ? C21 A1BNX 602 A 1 HETATM 7 C C20 A1BNX . . . C 3 16.898 20.395 6.356 1 102.03 ? C20 A1BNX 602 A 1 HETATM 8 C C17 A1BNX . . . C 3 14.008 21.963 9.624 1 105.86 ? C17 A1BNX 602 A 1 HETATM 9 C C23 A1BNX . . . C 3 14.358 19.997 3.576 1 103.49 ? C23 A1BNX 602 A 1 HETATM 10 C C02 A1BNX . . . C 3 18.675 18.881 7.274 1 94.86 ? C02 A1BNX 602 A 1 HETATM 11 C C04 A1BNX . . . C 3 18.689 17.485 9.447 1 96.91 ? C04 A1BNX 602 A 1 HETATM 12 C C05 A1BNX . . . C 3 18.943 18.149 10.632 1 92.25 ? C05 A1BNX 602 A 1 HETATM 13 C C06 A1BNX . . . C 3 18.357 17.706 11.802 1 102.23 ? C06 A1BNX 602 A 1 HETATM 14 C C07 A1BNX . . . C 3 17.519 16.605 11.789 1 105.86 ? C07 A1BNX 602 A 1 HETATM 15 C C08 A1BNX . . . C 3 17.265 15.944 10.6 1 103.5 ? C08 A1BNX 602 A 1 HETATM 16 C C09 A1BNX . . . C 3 17.85 16.384 9.426 1 102.8 ? C09 A1BNX 602 A 1 HETATM 17 C C19 A1BNX . . . C 3 14.524 20.839 9.004 1 99.57 ? C19 A1BNX 602 A 1 HETATM 18 C C22 A1BNX . . . C 3 15.422 20.609 4.478 1 101.48 ? C22 A1BNX 602 A 1 HETATM 19 C C27 A1BNX . . . C 3 15.89 21.893 4.266 1 100.74 ? C27 A1BNX 602 A 1 HETATM 20 C C28 A1BNX . . . C 3 16.859 22.428 5.103 1 97.59 ? C28 A1BNX 602 A 1 HETATM 21 C C29 A1BNX . . . C 3 17.372 21.691 6.155 1 95.42 ? C29 A1BNX 602 A 1 HETATM 22 C C31 A1BNX . . . C 3 18.11 23.179 7.827 1 90.24 ? C31 A1BNX 602 A 1 HETATM 23 C C32 A1BNX . . . C 3 19.353 23.489 8.358 1 86.75 ? C32 A1BNX 602 A 1 HETATM 24 C C34 A1BNX . . . C 3 19.598 22.012 6.853 1 88.87 ? C34 A1BNX 602 A 1 HETATM 25 F F24 A1BNX . . . C 3 14.686 20.228 2.279 1 110.85 ? F24 A1BNX 602 A 1 HETATM 26 F F25 A1BNX . . . C 3 13.154 20.568 3.851 1 95.8 ? F25 A1BNX 602 A 1 HETATM 27 F F26 A1BNX . . . C 3 14.295 18.658 3.808 1 105.85 ? F26 A1BNX 602 A 1 HETATM 28 N N03 A1BNX . . . C 3 19.297 17.953 8.217 1 93.88 ? N03 A1BNX 602 A 1 HETATM 29 N N11 A1BNX . . . C 3 17.353 19.514 7.417 1 105.54 ? N11 A1BNX 602 A 1 HETATM 30 N N30 A1BNX . . . C 3 18.301 22.252 6.913 1 89.71 ? N30 A1BNX 602 A 1 HETATM 31 N N33 A1BNX . . . C 3 20.248 22.749 7.734 1 83.67 ? N33 A1BNX 602 A 1 HETATM 32 O O01 A1BNX . . . C 3 19.315 19.156 6.318 1 88.8 ? O01 A1BNX 602 A 1 HETATM 33 O O18 A1BNX . . . C 3 12.667 22.323 9.443 1 110.2 ? O18 A1BNX 602 A 1 HETATM 34 CL CL10 A1BNX . . . C 3 17.52 15.535 7.89 1 114.65 ? CL10 A1BNX 602 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #