data_9MSV # _model_server_result.job_id 3BXpHs4hrKYi5cxQUME7uA _model_server_result.datetime_utc '2025-06-18 19:02:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9msv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9MSV # _exptl.entry_id 9MSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-4-[2,4-dichloro-5-(2-pyrrolidin-1-ylethoxy)phenyl]-N-ethylthieno[2,3-d]pyrimidine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MSV _cell.length_a 73.915 _cell.length_b 73.915 _cell.length_c 108.003 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall 'P 4cw 2c' _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 Cl2 N5 O2 S' _chem_comp.formula_weight 480.411 _chem_comp.id 2KL _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-4-[2,4-dichloro-5-(2-pyrrolidin-1-ylethoxy)phenyl]-N-ethylthieno[2,3-d]pyrimidine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C12 2KL doub 1 n n C12 N14 2KL sing 2 n n C12 C8 2KL sing 3 n n N14 C15 2KL sing 4 n n C15 C16 2KL sing 5 n n C8 S7 2KL sing 6 n y C8 C9 2KL doub 7 n y S7 C6 2KL sing 8 n y C9 C5 2KL sing 9 n y C5 C6 2KL sing 10 n y C5 C4 2KL doub 11 n y C6 N3 2KL doub 12 n y N3 C2 2KL sing 13 n y C2 N11 2KL sing 14 n n C2 N1 2KL doub 15 n y N1 C4 2KL sing 16 n y C4 C10 2KL sing 17 n y C10 C17 2KL sing 18 n y C10 C21 2KL doub 19 n y C17 C18 2KL doub 20 n y C21 CL1 2KL sing 21 n n C21 C20 2KL sing 22 n y C20 C19 2KL doub 23 n y C19 CL2 2KL sing 24 n n C19 C18 2KL sing 25 n y C18 O24 2KL sing 26 n n O24 C25 2KL sing 27 n n C25 C26 2KL sing 28 n n C26 N27 2KL sing 29 n n N27 C28 2KL sing 30 n n N27 C31 2KL sing 31 n n C28 C29 2KL sing 32 n n C31 C30 2KL sing 33 n n C30 C29 2KL sing 34 n n N14 H14 2KL sing 35 n n C15 H151 2KL sing 36 n n C15 H152 2KL sing 37 n n C16 H161 2KL sing 38 n n C16 H162 2KL sing 39 n n C16 H163 2KL sing 40 n n C9 H9 2KL sing 41 n n N11 H111 2KL sing 42 n n N11 H112 2KL sing 43 n n C17 H17 2KL sing 44 n n C20 H20 2KL sing 45 n n C25 H251 2KL sing 46 n n C25 H252 2KL sing 47 n n C26 H261 2KL sing 48 n n C26 H262 2KL sing 49 n n C28 H281 2KL sing 50 n n C28 H282 2KL sing 51 n n C31 H311 2KL sing 52 n n C31 H312 2KL sing 53 n n C29 H291 2KL sing 54 n n C29 H292 2KL sing 55 n n C30 H301 2KL sing 56 n n C30 H302 2KL sing 57 n n # _atom_sites.entry_id 9MSV _atom_sites.fract_transf_matrix[1][1] 0.013529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2KL A 1 301 301 2KL B0P . C 3 HOH A 1 401 119 HOH HOH . C 3 HOH A 2 402 89 HOH HOH . C 3 HOH A 3 403 17 HOH HOH . C 3 HOH A 4 404 76 HOH HOH . C 3 HOH A 5 405 75 HOH HOH . C 3 HOH A 6 406 63 HOH HOH . C 3 HOH A 7 407 15 HOH HOH . C 3 HOH A 8 408 59 HOH HOH . C 3 HOH A 9 409 108 HOH HOH . C 3 HOH A 10 410 103 HOH HOH . C 3 HOH A 11 411 41 HOH HOH . C 3 HOH A 12 412 69 HOH HOH . C 3 HOH A 13 413 1 HOH HOH . C 3 HOH A 14 414 71 HOH HOH . C 3 HOH A 15 415 4 HOH HOH . C 3 HOH A 16 416 73 HOH HOH . C 3 HOH A 17 417 20 HOH HOH . C 3 HOH A 18 418 46 HOH HOH . C 3 HOH A 19 419 124 HOH HOH . C 3 HOH A 20 420 36 HOH HOH . C 3 HOH A 21 421 82 HOH HOH . C 3 HOH A 22 422 23 HOH HOH . C 3 HOH A 23 423 110 HOH HOH . C 3 HOH A 24 424 43 HOH HOH . C 3 HOH A 25 425 28 HOH HOH . C 3 HOH A 26 426 77 HOH HOH . C 3 HOH A 27 427 109 HOH HOH . C 3 HOH A 28 428 99 HOH HOH . C 3 HOH A 29 429 18 HOH HOH . C 3 HOH A 30 430 26 HOH HOH . C 3 HOH A 31 431 11 HOH HOH . C 3 HOH A 32 432 25 HOH HOH . C 3 HOH A 33 433 35 HOH HOH . C 3 HOH A 34 434 92 HOH HOH . C 3 HOH A 35 435 91 HOH HOH . C 3 HOH A 36 436 7 HOH HOH . C 3 HOH A 37 437 83 HOH HOH . C 3 HOH A 38 438 14 HOH HOH . C 3 HOH A 39 439 56 HOH HOH . C 3 HOH A 40 440 8 HOH HOH . C 3 HOH A 41 441 48 HOH HOH . C 3 HOH A 42 442 3 HOH HOH . C 3 HOH A 43 443 107 HOH HOH . C 3 HOH A 44 444 22 HOH HOH . C 3 HOH A 45 445 96 HOH HOH . C 3 HOH A 46 446 21 HOH HOH . C 3 HOH A 47 447 55 HOH HOH . C 3 HOH A 48 448 79 HOH HOH . C 3 HOH A 49 449 51 HOH HOH . C 3 HOH A 50 450 62 HOH HOH . C 3 HOH A 51 451 2 HOH HOH . C 3 HOH A 52 452 97 HOH HOH . C 3 HOH A 53 453 86 HOH HOH . C 3 HOH A 54 454 50 HOH HOH . C 3 HOH A 55 455 126 HOH HOH . C 3 HOH A 56 456 102 HOH HOH . C 3 HOH A 57 457 13 HOH HOH . C 3 HOH A 58 458 93 HOH HOH . C 3 HOH A 59 459 19 HOH HOH . C 3 HOH A 60 460 49 HOH HOH . C 3 HOH A 61 461 9 HOH HOH . C 3 HOH A 62 462 127 HOH HOH . C 3 HOH A 63 463 47 HOH HOH . C 3 HOH A 64 464 61 HOH HOH . C 3 HOH A 65 465 24 HOH HOH . C 3 HOH A 66 466 32 HOH HOH . C 3 HOH A 67 467 31 HOH HOH . C 3 HOH A 68 468 78 HOH HOH . C 3 HOH A 69 469 132 HOH HOH . C 3 HOH A 70 470 111 HOH HOH . C 3 HOH A 71 471 66 HOH HOH . C 3 HOH A 72 472 90 HOH HOH . C 3 HOH A 73 473 6 HOH HOH . C 3 HOH A 74 474 100 HOH HOH . C 3 HOH A 75 475 42 HOH HOH . C 3 HOH A 76 476 65 HOH HOH . C 3 HOH A 77 477 128 HOH HOH . C 3 HOH A 78 478 38 HOH HOH . C 3 HOH A 79 479 5 HOH HOH . C 3 HOH A 80 480 37 HOH HOH . C 3 HOH A 81 481 10 HOH HOH . C 3 HOH A 82 482 88 HOH HOH . C 3 HOH A 83 483 40 HOH HOH . C 3 HOH A 84 484 29 HOH HOH . C 3 HOH A 85 485 80 HOH HOH . C 3 HOH A 86 486 94 HOH HOH . C 3 HOH A 87 487 118 HOH HOH . C 3 HOH A 88 488 16 HOH HOH . C 3 HOH A 89 489 129 HOH HOH . C 3 HOH A 90 490 39 HOH HOH . C 3 HOH A 91 491 115 HOH HOH . C 3 HOH A 92 492 44 HOH HOH . C 3 HOH A 93 493 60 HOH HOH . C 3 HOH A 94 494 64 HOH HOH . C 3 HOH A 95 495 74 HOH HOH . C 3 HOH A 96 496 30 HOH HOH . C 3 HOH A 97 497 84 HOH HOH . C 3 HOH A 98 498 33 HOH HOH . C 3 HOH A 99 499 53 HOH HOH . C 3 HOH A 100 500 27 HOH HOH . C 3 HOH A 101 501 130 HOH HOH . C 3 HOH A 102 502 12 HOH HOH . C 3 HOH A 103 503 70 HOH HOH . C 3 HOH A 104 504 123 HOH HOH . C 3 HOH A 105 505 34 HOH HOH . C 3 HOH A 106 506 133 HOH HOH . C 3 HOH A 107 507 85 HOH HOH . C 3 HOH A 108 508 105 HOH HOH . C 3 HOH A 109 509 67 HOH HOH . C 3 HOH A 110 510 45 HOH HOH . C 3 HOH A 111 511 114 HOH HOH . C 3 HOH A 112 512 121 HOH HOH . C 3 HOH A 113 513 58 HOH HOH . C 3 HOH A 114 514 52 HOH HOH . C 3 HOH A 115 515 54 HOH HOH . C 3 HOH A 116 516 81 HOH HOH . C 3 HOH A 117 517 122 HOH HOH . C 3 HOH A 118 518 101 HOH HOH . C 3 HOH A 119 519 113 HOH HOH . C 3 HOH A 120 520 125 HOH HOH . C 3 HOH A 121 521 112 HOH HOH . C 3 HOH A 122 522 87 HOH HOH . C 3 HOH A 123 523 135 HOH HOH . C 3 HOH A 124 524 95 HOH HOH . C 3 HOH A 125 525 72 HOH HOH . C 3 HOH A 126 526 116 HOH HOH . C 3 HOH A 127 527 57 HOH HOH . C 3 HOH A 128 528 106 HOH HOH . C 3 HOH A 129 529 68 HOH HOH . C 3 HOH A 130 530 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 2KL . . . B 2 15.641 0.426 -7.529 1 35.15 ? O13 2KL 301 A 1 HETATM 2 C C12 2KL . . . B 2 16.682 -0.036 -7.838 1 40.44 ? C12 2KL 301 A 1 HETATM 3 N N14 2KL . . . B 2 17.387 0.396 -9.023 1 45.73 ? N14 2KL 301 A 1 HETATM 4 C C15 2KL . . . B 2 16.827 1.411 -9.906 1 47.6 ? C15 2KL 301 A 1 HETATM 5 C C16 2KL . . . B 2 16.854 2.681 -9.064 1 39.06 ? C16 2KL 301 A 1 HETATM 6 C C8 2KL . . . B 2 17.305 -1.088 -6.957 1 36.36 ? C8 2KL 301 A 1 HETATM 7 S S7 2KL . . . B 2 18.761 -1.843 -7.285 1 27.39 ? S7 2KL 301 A 1 HETATM 8 C C9 2KL . . . B 2 16.733 -1.529 -5.717 1 26.54 ? C9 2KL 301 A 1 HETATM 9 C C5 2KL . . . B 2 17.656 -2.574 -5.114 1 26.93 ? C5 2KL 301 A 1 HETATM 10 C C6 2KL . . . B 2 18.758 -2.874 -5.937 1 22.87 ? C6 2KL 301 A 1 HETATM 11 N N3 2KL . . . B 2 19.631 -3.753 -5.497 1 24.28 ? N3 2KL 301 A 1 HETATM 12 C C2 2KL . . . B 2 19.437 -4.391 -4.325 1 21.61 ? C2 2KL 301 A 1 HETATM 13 N N11 2KL . . . B 2 20.379 -5.413 -3.972 1 25.51 ? N11 2KL 301 A 1 HETATM 14 N N1 2KL . . . B 2 18.366 -4.199 -3.542 1 23.5 ? N1 2KL 301 A 1 HETATM 15 C C4 2KL . . . B 2 17.472 -3.284 -3.913 1 23.67 ? C4 2KL 301 A 1 HETATM 16 C C10 2KL . . . B 2 16.281 -2.982 -3.016 1 24.95 ? C10 2KL 301 A 1 HETATM 17 C C17 2KL . . . B 2 14.997 -3.243 -3.397 1 31.88 ? C17 2KL 301 A 1 HETATM 18 C C21 2KL . . . B 2 16.504 -2.445 -1.767 1 29.57 ? C21 2KL 301 A 1 HETATM 19 CL CL1 2KL . . . B 2 18.144 -2.11 -1.231 1 30.09 ? CL1 2KL 301 A 1 HETATM 20 C C20 2KL . . . B 2 15.454 -2.162 -0.904 1 28.86 ? C20 2KL 301 A 1 HETATM 21 C C19 2KL . . . B 2 14.162 -2.425 -1.317 1 30.56 ? C19 2KL 301 A 1 HETATM 22 CL CL2 2KL . . . B 2 12.789 -2.033 -0.247 1 39.72 ? CL2 2KL 301 A 1 HETATM 23 C C18 2KL . . . B 2 13.933 -2.953 -2.561 1 30.13 ? C18 2KL 301 A 1 HETATM 24 O O24 2KL . . . B 2 12.597 -3.188 -2.938 1 34.49 ? O24 2KL 301 A 1 HETATM 25 C C25 2KL . . . B 2 12.299 -4.315 -3.686 1 35.27 ? C25 2KL 301 A 1 HETATM 26 C C26 2KL . . . B 2 11.186 -3.929 -4.657 1 51.14 ? C26 2KL 301 A 1 HETATM 27 N N27 2KL . . . B 2 10.206 -3.509 -4.166 1 45.58 ? N27 2KL 301 A 1 HETATM 28 C C28 2KL . . . B 2 9.051 -3.539 -5.27 1 51.21 ? C28 2KL 301 A 1 HETATM 29 C C31 2KL . . . B 2 10.292 -2.299 -3.807 1 39.02 ? C31 2KL 301 A 1 HETATM 30 C C30 2KL . . . B 2 8.856 -1.682 -4.037 1 56.75 ? C30 2KL 301 A 1 HETATM 31 C C29 2KL . . . B 2 8.122 -2.711 -4.806 1 53.88 ? C29 2KL 301 A 1 HETATM 32 H H14 2KL . . . B 2 18.276 -0.009 -9.241 1 54.87 ? H14 2KL 301 A 1 HETATM 33 H H151 2KL . . . B 2 17.434 1.525 -10.798 1 57.12 ? H151 2KL 301 A 1 HETATM 34 H H152 2KL . . . B 2 15.812 1.158 -10.193 1 57.12 ? H152 2KL 301 A 1 HETATM 35 H H161 2KL . . . B 2 16.132 3.391 -9.457 1 46.88 ? H161 2KL 301 A 1 HETATM 36 H H162 2KL . . . B 2 17.847 3.118 -9.099 1 46.88 ? H162 2KL 301 A 1 HETATM 37 H H163 2KL . . . B 2 16.601 2.439 -8.036 1 46.88 ? H163 2KL 301 A 1 HETATM 38 H H9 2KL . . . B 2 15.803 -1.177 -5.285 1 31.85 ? H9 2KL 301 A 1 HETATM 39 H H111 2KL . . . B 2 21.266 -5.177 -3.578 1 30.61 ? H111 2KL 301 A 1 HETATM 40 H H112 2KL . . . B 2 20.141 -6.366 -4.164 1 30.61 ? H112 2KL 301 A 1 HETATM 41 H H17 2KL . . . B 2 14.807 -3.683 -4.368 1 38.26 ? H17 2KL 301 A 1 HETATM 42 H H20 2KL . . . B 2 15.645 -1.743 0.076 1 34.63 ? H20 2KL 301 A 1 HETATM 43 H H251 2KL . . . B 2 13.177 -4.636 -4.238 1 42.32 ? H251 2KL 301 A 1 HETATM 44 H H252 2KL . . . B 2 11.963 -5.115 -3.035 1 42.32 ? H252 2KL 301 A 1 HETATM 45 H H261 2KL . . . B 2 10.921 -4.812 -5.23 1 61.37 ? H261 2KL 301 A 1 HETATM 46 H H262 2KL . . . B 2 11.575 -3.169 -5.328 1 61.37 ? H262 2KL 301 A 1 HETATM 47 H H281 2KL . . . B 2 8.647 -4.542 -5.368 1 61.46 ? H281 2KL 301 A 1 HETATM 48 H H282 2KL . . . B 2 9.43 -3.185 -6.224 1 61.46 ? H282 2KL 301 A 1 HETATM 49 H H311 2KL . . . B 2 11.025 -1.779 -4.419 1 46.82 ? H311 2KL 301 A 1 HETATM 50 H H312 2KL . . . B 2 10.561 -2.239 -2.756 1 46.82 ? H312 2KL 301 A 1 HETATM 51 H H291 2KL . . . B 2 7.436 -3.245 -4.155 1 64.66 ? H291 2KL 301 A 1 HETATM 52 H H292 2KL . . . B 2 7.586 -2.25 -5.63 1 64.66 ? H292 2KL 301 A 1 HETATM 53 H H301 2KL . . . B 2 8.928 -0.763 -4.609 1 68.1 ? H301 2KL 301 A 1 HETATM 54 H H302 2KL . . . B 2 8.367 -1.501 -3.085 1 68.1 ? H302 2KL 301 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 54 #