data_9MSX # _model_server_result.job_id JDYbikNHRY06Iwp_q6cuzw _model_server_result.datetime_utc '2025-06-18 16:50:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9msx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 9MSX # _exptl.entry_id 9MSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.527 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4P)-3-ethyl-4-[(4P)-4-[(4M)-4-(1-methyl-1H-pyrazol-4-yl)-1H-imidazol-1-yl]-3-(propan-2-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9MSX _cell.length_a 47.907 _cell.length_b 47.907 _cell.length_c 342.687 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C25 H26 N8 O' _chem_comp.formula_weight 454.527 _chem_comp.id A1BPC _chem_comp.mon_nstd_flag . _chem_comp.name (4P)-3-ethyl-4-[(4P)-4-[(4M)-4-(1-methyl-1H-pyrazol-4-yl)-1H-imidazol-1-yl]-3-(propan-2-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Tas-116;Pimitespib;Jeselhy # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 A1BPC sing 1 n n C03 C02 A1BPC sing 2 n n C04 C03 A1BPC doub 3 n y C06 C05 A1BPC doub 4 n y C07 C06 A1BPC sing 5 n y C08 C07 A1BPC doub 6 n y C09 C07 A1BPC sing 7 n n O10 C09 A1BPC doub 8 n n N11 C09 A1BPC sing 9 n n C05 C04 A1BPC sing 10 n y N12 C04 A1BPC sing 11 n n C13 N12 A1BPC sing 12 n y N14 C13 A1BPC doub 13 n y C15 N14 A1BPC sing 14 n y C16 C15 A1BPC doub 15 n y C17 C16 A1BPC sing 16 n y C19 C18 A1BPC sing 17 n y N20 C19 A1BPC doub 18 n y C21 C19 A1BPC sing 19 n n C22 C21 A1BPC sing 20 n n C23 C21 A1BPC sing 21 n n C18 C17 A1BPC doub 22 n y N24 C17 A1BPC sing 23 n n C25 N24 A1BPC sing 24 n y C26 C25 A1BPC doub 25 n y C28 N27 A1BPC doub 26 n y N27 C26 A1BPC sing 27 n y C29 C26 A1BPC sing 28 n n C30 C29 A1BPC doub 29 n y N31 C30 A1BPC sing 30 n y C33 N32 A1BPC doub 31 n y N32 N31 A1BPC sing 32 n y C34 N31 A1BPC sing 33 n n C03 C08 A1BPC sing 34 n y N12 N20 A1BPC sing 35 n y C13 C18 A1BPC sing 36 n y N24 C28 A1BPC sing 37 n y C29 C33 A1BPC sing 38 n y C30 H301 A1BPC sing 39 n n C33 H331 A1BPC sing 40 n n C01 H012 A1BPC sing 41 n n C01 H013 A1BPC sing 42 n n C01 H011 A1BPC sing 43 n n C02 H021 A1BPC sing 44 n n C02 H022 A1BPC sing 45 n n C05 H051 A1BPC sing 46 n n C06 H061 A1BPC sing 47 n n C08 H081 A1BPC sing 48 n n C15 H151 A1BPC sing 49 n n C16 H161 A1BPC sing 50 n n C21 H211 A1BPC sing 51 n n C22 H223 A1BPC sing 52 n n C22 H222 A1BPC sing 53 n n C22 H221 A1BPC sing 54 n n C23 H231 A1BPC sing 55 n n C23 H232 A1BPC sing 56 n n C23 H233 A1BPC sing 57 n n C25 H251 A1BPC sing 58 n n C28 H281 A1BPC sing 59 n n C34 H343 A1BPC sing 60 n n C34 H341 A1BPC sing 61 n n C34 H342 A1BPC sing 62 n n N11 H111 A1BPC sing 63 n n N11 H112 A1BPC sing 64 n n # _atom_sites.entry_id 9MSX _atom_sites.fract_transf_matrix[1][1] 0.020874 _atom_sites.fract_transf_matrix[1][2] 0.012051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1BPC A 1 301 301 A1BPC T9U . D 3 EDO B 1 301 302 EDO EDO . E 2 A1BPC B 1 302 301 A1BPC T9U . F 3 EDO B 1 303 302 EDO EDO . G 4 HOH A 1 401 35 HOH HOH . G 4 HOH A 2 402 17 HOH HOH . G 4 HOH A 3 403 1 HOH HOH . G 4 HOH A 4 404 515 HOH HOH . G 4 HOH A 5 405 10 HOH HOH . G 4 HOH A 6 406 28 HOH HOH . G 4 HOH A 7 407 429 HOH HOH . G 4 HOH A 8 408 43 HOH HOH . G 4 HOH A 9 409 209 HOH HOH . G 4 HOH A 10 410 52 HOH HOH . G 4 HOH A 11 411 125 HOH HOH . G 4 HOH A 12 412 58 HOH HOH . G 4 HOH A 13 413 311 HOH HOH . G 4 HOH A 14 414 595 HOH HOH . G 4 HOH A 15 415 198 HOH HOH . G 4 HOH A 16 416 20 HOH HOH . G 4 HOH A 17 417 385 HOH HOH . G 4 HOH A 18 418 503 HOH HOH . G 4 HOH A 19 419 41 HOH HOH . G 4 HOH A 20 420 529 HOH HOH . G 4 HOH A 21 421 449 HOH HOH . G 4 HOH A 22 422 16 HOH HOH . G 4 HOH A 23 423 399 HOH HOH . G 4 HOH A 24 424 112 HOH HOH . G 4 HOH A 25 425 405 HOH HOH . G 4 HOH A 26 426 7 HOH HOH . G 4 HOH A 27 427 9 HOH HOH . G 4 HOH A 28 428 608 HOH HOH . G 4 HOH A 29 429 200 HOH HOH . G 4 HOH A 30 430 653 HOH HOH . G 4 HOH A 31 431 254 HOH HOH . G 4 HOH A 32 432 21 HOH HOH . G 4 HOH A 33 433 207 HOH HOH . G 4 HOH A 34 434 360 HOH HOH . G 4 HOH A 35 435 409 HOH HOH . G 4 HOH A 36 436 437 HOH HOH . G 4 HOH A 37 437 389 HOH HOH . G 4 HOH A 38 438 568 HOH HOH . G 4 HOH A 39 439 714 HOH HOH . G 4 HOH A 40 440 476 HOH HOH . G 4 HOH A 41 441 413 HOH HOH . H 4 HOH B 1 401 292 HOH HOH . H 4 HOH B 2 402 465 HOH HOH . H 4 HOH B 3 403 86 HOH HOH . H 4 HOH B 4 404 202 HOH HOH . H 4 HOH B 5 405 31 HOH HOH . H 4 HOH B 6 406 37 HOH HOH . H 4 HOH B 7 407 115 HOH HOH . H 4 HOH B 8 408 682 HOH HOH . H 4 HOH B 9 409 2 HOH HOH . H 4 HOH B 10 410 38 HOH HOH . H 4 HOH B 11 411 577 HOH HOH . H 4 HOH B 12 412 565 HOH HOH . H 4 HOH B 13 413 11 HOH HOH . H 4 HOH B 14 414 264 HOH HOH . H 4 HOH B 15 415 267 HOH HOH . H 4 HOH B 16 416 80 HOH HOH . H 4 HOH B 17 417 12 HOH HOH . H 4 HOH B 18 418 194 HOH HOH . H 4 HOH B 19 419 25 HOH HOH . H 4 HOH B 20 420 353 HOH HOH . H 4 HOH B 21 421 506 HOH HOH . H 4 HOH B 22 422 446 HOH HOH . H 4 HOH B 23 423 355 HOH HOH . H 4 HOH B 24 424 586 HOH HOH . H 4 HOH B 25 425 219 HOH HOH . H 4 HOH B 26 426 350 HOH HOH . H 4 HOH B 27 427 417 HOH HOH . H 4 HOH B 28 428 40 HOH HOH . H 4 HOH B 29 429 349 HOH HOH . H 4 HOH B 30 430 719 HOH HOH . H 4 HOH B 31 431 375 HOH HOH . H 4 HOH B 32 432 572 HOH HOH . H 4 HOH B 33 433 66 HOH HOH . H 4 HOH B 34 434 220 HOH HOH . H 4 HOH B 35 435 15 HOH HOH . H 4 HOH B 36 436 649 HOH HOH . H 4 HOH B 37 437 347 HOH HOH . H 4 HOH B 38 438 374 HOH HOH . H 4 HOH B 39 439 296 HOH HOH . H 4 HOH B 40 440 213 HOH HOH . H 4 HOH B 41 441 377 HOH HOH . H 4 HOH B 42 442 380 HOH HOH . H 4 HOH B 43 443 197 HOH HOH . H 4 HOH B 44 444 56 HOH HOH . H 4 HOH B 45 445 571 HOH HOH . H 4 HOH B 46 446 652 HOH HOH . H 4 HOH B 47 447 387 HOH HOH . H 4 HOH B 48 448 359 HOH HOH . H 4 HOH B 49 449 390 HOH HOH . H 4 HOH B 50 450 403 HOH HOH . H 4 HOH B 51 451 752 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 A1BPC . . . C 2 2.29 17.286 18.886 1 34.48 ? C29 A1BPC 301 A 1 HETATM 2 C C30 A1BPC . . . C 2 0.921 17.197 18.982 1 29 ? C30 A1BPC 301 A 1 HETATM 3 C C33 A1BPC . . . C 2 2.68 18.537 19.373 1 45.93 ? C33 A1BPC 301 A 1 HETATM 4 C C01 A1BPC . . . C 2 6.84 8.311 21.352 1 30.69 ? C01 A1BPC 301 A 1 HETATM 5 C C02 A1BPC . . . C 2 5.749 8.253 20.236 1 27.65 ? C02 A1BPC 301 A 1 HETATM 6 C C03 A1BPC . . . C 2 6.469 7.851 18.914 1 33.57 ? C03 A1BPC 301 A 1 HETATM 7 C C04 A1BPC . . . C 2 6.957 8.837 18.048 1 27.47 ? C04 A1BPC 301 A 1 HETATM 8 C C05 A1BPC . . . C 2 7.587 8.513 16.858 1 31.62 ? C05 A1BPC 301 A 1 HETATM 9 C C06 A1BPC . . . C 2 7.8 7.165 16.537 1 30.17 ? C06 A1BPC 301 A 1 HETATM 10 C C07 A1BPC . . . C 2 7.354 6.176 17.416 1 34.24 ? C07 A1BPC 301 A 1 HETATM 11 C C08 A1BPC . . . C 2 6.692 6.512 18.588 1 27.71 ? C08 A1BPC 301 A 1 HETATM 12 C C09 A1BPC . . . C 2 7.517 4.69 17.121 1 41.48 ? C09 A1BPC 301 A 1 HETATM 13 C C13 A1BPC . . . C 2 5.688 10.83 17.615 1 32.59 ? C13 A1BPC 301 A 1 HETATM 14 C C15 A1BPC . . . C 2 4.063 11.059 15.94 1 28.42 ? C15 A1BPC 301 A 1 HETATM 15 C C16 A1BPC . . . C 2 3.791 12.385 16.335 1 29.52 ? C16 A1BPC 301 A 1 HETATM 16 C C17 A1BPC . . . C 2 4.494 12.932 17.424 1 27.08 ? C17 A1BPC 301 A 1 HETATM 17 C C18 A1BPC . . . C 2 5.497 12.097 18.069 1 24.06 ? C18 A1BPC 301 A 1 HETATM 18 C C19 A1BPC . . . C 2 6.449 12.218 19.173 1 33.63 ? C19 A1BPC 301 A 1 HETATM 19 C C21 A1BPC . . . C 2 6.652 13.475 20.025 1 27.7 ? C21 A1BPC 301 A 1 HETATM 20 C C22 A1BPC . . . C 2 8.026 13.574 20.67 1 41.96 ? C22 A1BPC 301 A 1 HETATM 21 C C23 A1BPC . . . C 2 5.615 13.449 21.163 1 37.36 ? C23 A1BPC 301 A 1 HETATM 22 C C25 A1BPC . . . C 2 3.081 14.875 18.182 1 26.69 ? C25 A1BPC 301 A 1 HETATM 23 C C26 A1BPC . . . C 2 3.291 16.235 18.371 1 32.5 ? C26 A1BPC 301 A 1 HETATM 24 C C28 A1BPC . . . C 2 5.137 15.34 17.752 1 25.64 ? C28 A1BPC 301 A 1 HETATM 25 C C34 A1BPC . . . C 2 -0.849 18.746 19.804 1 29.44 ? C34 A1BPC 301 A 1 HETATM 26 N N11 A1BPC . . . C 2 6.379 3.878 17.528 1 20.24 ? N11 A1BPC 301 A 1 HETATM 27 N N12 A1BPC . . . C 2 6.654 10.239 18.36 1 35.52 ? N12 A1BPC 301 A 1 HETATM 28 N N14 A1BPC . . . C 2 4.979 10.319 16.568 1 24.3 ? N14 A1BPC 301 A 1 HETATM 29 N N20 A1BPC . . . C 2 7.107 11.057 19.325 1 31.68 ? N20 A1BPC 301 A 1 HETATM 30 N N24 A1BPC . . . C 2 4.228 14.356 17.798 1 23.41 ? N24 A1BPC 301 A 1 HETATM 31 N N27 A1BPC . . . C 2 4.55 16.497 18.16 1 22.26 ? N27 A1BPC 301 A 1 HETATM 32 N N31 A1BPC . . . C 2 0.524 18.351 19.531 1 37.7 ? N31 A1BPC 301 A 1 HETATM 33 N N32 A1BPC . . . C 2 1.579 19.207 19.755 1 41.87 ? N32 A1BPC 301 A 1 HETATM 34 O O10 A1BPC . . . C 2 8.47 4.236 16.542 1 29.79 ? O10 A1BPC 301 A 1 HETATM 35 H H301 A1BPC . . . C 2 0.295 16.368 18.677 1 34.8 ? H301 A1BPC 301 A 1 HETATM 36 H H331 A1BPC . . . C 2 3.695 18.905 19.432 1 55.11 ? H331 A1BPC 301 A 1 HETATM 37 H H012 A1BPC . . . C 2 6.746 7.436 21.999 1 36.83 ? H012 A1BPC 301 A 1 HETATM 38 H H013 A1BPC . . . C 2 6.707 9.218 21.946 1 36.83 ? H013 A1BPC 301 A 1 HETATM 39 H H011 A1BPC . . . C 2 7.831 8.319 20.893 1 36.83 ? H011 A1BPC 301 A 1 HETATM 40 H H021 A1BPC . . . C 2 5.277 9.219 20.126 1 33.18 ? H021 A1BPC 301 A 1 HETATM 41 H H022 A1BPC . . . C 2 4.996 7.522 20.489 1 33.18 ? H022 A1BPC 301 A 1 HETATM 42 H H051 A1BPC . . . C 2 7.913 9.293 16.182 1 37.94 ? H051 A1BPC 301 A 1 HETATM 43 H H061 A1BPC . . . C 2 8.306 6.893 15.616 1 36.2 ? H061 A1BPC 301 A 1 HETATM 44 H H081 A1BPC . . . C 2 6.346 5.732 19.253 1 33.25 ? H081 A1BPC 301 A 1 HETATM 45 H H151 A1BPC . . . C 2 3.513 10.629 15.107 1 34.11 ? H151 A1BPC 301 A 1 HETATM 46 H H161 A1BPC . . . C 2 3.053 12.975 15.806 1 35.43 ? H161 A1BPC 301 A 1 HETATM 47 H H211 A1BPC . . . C 2 6.545 14.322 19.361 1 33.24 ? H211 A1BPC 301 A 1 HETATM 48 H H223 A1BPC . . . C 2 8.788 13.601 19.896 1 50.35 ? H223 A1BPC 301 A 1 HETATM 49 H H222 A1BPC . . . C 2 8.082 14.481 21.266 1 50.35 ? H222 A1BPC 301 A 1 HETATM 50 H H221 A1BPC . . . C 2 8.189 12.71 21.309 1 50.35 ? H221 A1BPC 301 A 1 HETATM 51 H H231 A1BPC . . . C 2 4.991 12.565 21.065 1 44.83 ? H231 A1BPC 301 A 1 HETATM 52 H H232 A1BPC . . . C 2 4.993 14.339 21.107 1 44.83 ? H232 A1BPC 301 A 1 HETATM 53 H H233 A1BPC . . . C 2 6.128 13.426 22.121 1 44.83 ? H233 A1BPC 301 A 1 HETATM 54 H H251 A1BPC . . . C 2 2.152 14.343 18.322 1 32.02 ? H251 A1BPC 301 A 1 HETATM 55 H H281 A1BPC . . . C 2 6.165 15.232 17.443 1 30.77 ? H281 A1BPC 301 A 1 HETATM 56 H H343 A1BPC . . . C 2 -0.875 19.794 20.091 1 35.32 ? H343 A1BPC 301 A 1 HETATM 57 H H341 A1BPC . . . C 2 -1.247 18.138 20.613 1 35.32 ? H341 A1BPC 301 A 1 HETATM 58 H H342 A1BPC . . . C 2 -1.452 18.6 18.911 1 35.32 ? H342 A1BPC 301 A 1 HETATM 59 H H111 A1BPC . . . C 2 5.607 4.301 17.983 1 24.29 ? H111 A1BPC 301 A 1 HETATM 60 H H112 A1BPC . . . C 2 6.382 2.885 17.364 1 24.29 ? H112 A1BPC 301 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 60 #