data_9MSX # _model_server_result.job_id ya8QI2EZaeqIYHCxKAC18A _model_server_result.datetime_utc '2025-06-18 16:51:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9msx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 9MSX # _exptl.entry_id 9MSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.527 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4P)-3-ethyl-4-[(4P)-4-[(4M)-4-(1-methyl-1H-pyrazol-4-yl)-1H-imidazol-1-yl]-3-(propan-2-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9MSX _cell.length_a 47.907 _cell.length_b 47.907 _cell.length_c 342.687 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C25 H26 N8 O' _chem_comp.formula_weight 454.527 _chem_comp.id A1BPC _chem_comp.mon_nstd_flag . _chem_comp.name (4P)-3-ethyl-4-[(4P)-4-[(4M)-4-(1-methyl-1H-pyrazol-4-yl)-1H-imidazol-1-yl]-3-(propan-2-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Tas-116;Pimitespib;Jeselhy # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 A1BPC sing 1 n n C03 C02 A1BPC sing 2 n n C04 C03 A1BPC doub 3 n y C06 C05 A1BPC doub 4 n y C07 C06 A1BPC sing 5 n y C08 C07 A1BPC doub 6 n y C09 C07 A1BPC sing 7 n n O10 C09 A1BPC doub 8 n n N11 C09 A1BPC sing 9 n n C05 C04 A1BPC sing 10 n y N12 C04 A1BPC sing 11 n n C13 N12 A1BPC sing 12 n y N14 C13 A1BPC doub 13 n y C15 N14 A1BPC sing 14 n y C16 C15 A1BPC doub 15 n y C17 C16 A1BPC sing 16 n y C19 C18 A1BPC sing 17 n y N20 C19 A1BPC doub 18 n y C21 C19 A1BPC sing 19 n n C22 C21 A1BPC sing 20 n n C23 C21 A1BPC sing 21 n n C18 C17 A1BPC doub 22 n y N24 C17 A1BPC sing 23 n n C25 N24 A1BPC sing 24 n y C26 C25 A1BPC doub 25 n y C28 N27 A1BPC doub 26 n y N27 C26 A1BPC sing 27 n y C29 C26 A1BPC sing 28 n n C30 C29 A1BPC doub 29 n y N31 C30 A1BPC sing 30 n y C33 N32 A1BPC doub 31 n y N32 N31 A1BPC sing 32 n y C34 N31 A1BPC sing 33 n n C03 C08 A1BPC sing 34 n y N12 N20 A1BPC sing 35 n y C13 C18 A1BPC sing 36 n y N24 C28 A1BPC sing 37 n y C29 C33 A1BPC sing 38 n y C30 H301 A1BPC sing 39 n n C33 H331 A1BPC sing 40 n n C01 H012 A1BPC sing 41 n n C01 H013 A1BPC sing 42 n n C01 H011 A1BPC sing 43 n n C02 H021 A1BPC sing 44 n n C02 H022 A1BPC sing 45 n n C05 H051 A1BPC sing 46 n n C06 H061 A1BPC sing 47 n n C08 H081 A1BPC sing 48 n n C15 H151 A1BPC sing 49 n n C16 H161 A1BPC sing 50 n n C21 H211 A1BPC sing 51 n n C22 H223 A1BPC sing 52 n n C22 H222 A1BPC sing 53 n n C22 H221 A1BPC sing 54 n n C23 H231 A1BPC sing 55 n n C23 H232 A1BPC sing 56 n n C23 H233 A1BPC sing 57 n n C25 H251 A1BPC sing 58 n n C28 H281 A1BPC sing 59 n n C34 H343 A1BPC sing 60 n n C34 H341 A1BPC sing 61 n n C34 H342 A1BPC sing 62 n n N11 H111 A1BPC sing 63 n n N11 H112 A1BPC sing 64 n n # _atom_sites.entry_id 9MSX _atom_sites.fract_transf_matrix[1][1] 0.020874 _atom_sites.fract_transf_matrix[1][2] 0.012051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1BPC A 1 301 301 A1BPC T9U . D 3 EDO B 1 301 302 EDO EDO . E 2 A1BPC B 1 302 301 A1BPC T9U . F 3 EDO B 1 303 302 EDO EDO . G 4 HOH A 1 401 35 HOH HOH . G 4 HOH A 2 402 17 HOH HOH . G 4 HOH A 3 403 1 HOH HOH . G 4 HOH A 4 404 515 HOH HOH . G 4 HOH A 5 405 10 HOH HOH . G 4 HOH A 6 406 28 HOH HOH . G 4 HOH A 7 407 429 HOH HOH . G 4 HOH A 8 408 43 HOH HOH . G 4 HOH A 9 409 209 HOH HOH . G 4 HOH A 10 410 52 HOH HOH . G 4 HOH A 11 411 125 HOH HOH . G 4 HOH A 12 412 58 HOH HOH . G 4 HOH A 13 413 311 HOH HOH . G 4 HOH A 14 414 595 HOH HOH . G 4 HOH A 15 415 198 HOH HOH . G 4 HOH A 16 416 20 HOH HOH . G 4 HOH A 17 417 385 HOH HOH . G 4 HOH A 18 418 503 HOH HOH . G 4 HOH A 19 419 41 HOH HOH . G 4 HOH A 20 420 529 HOH HOH . G 4 HOH A 21 421 449 HOH HOH . G 4 HOH A 22 422 16 HOH HOH . G 4 HOH A 23 423 399 HOH HOH . G 4 HOH A 24 424 112 HOH HOH . G 4 HOH A 25 425 405 HOH HOH . G 4 HOH A 26 426 7 HOH HOH . G 4 HOH A 27 427 9 HOH HOH . G 4 HOH A 28 428 608 HOH HOH . G 4 HOH A 29 429 200 HOH HOH . G 4 HOH A 30 430 653 HOH HOH . G 4 HOH A 31 431 254 HOH HOH . G 4 HOH A 32 432 21 HOH HOH . G 4 HOH A 33 433 207 HOH HOH . G 4 HOH A 34 434 360 HOH HOH . G 4 HOH A 35 435 409 HOH HOH . G 4 HOH A 36 436 437 HOH HOH . G 4 HOH A 37 437 389 HOH HOH . G 4 HOH A 38 438 568 HOH HOH . G 4 HOH A 39 439 714 HOH HOH . G 4 HOH A 40 440 476 HOH HOH . G 4 HOH A 41 441 413 HOH HOH . H 4 HOH B 1 401 292 HOH HOH . H 4 HOH B 2 402 465 HOH HOH . H 4 HOH B 3 403 86 HOH HOH . H 4 HOH B 4 404 202 HOH HOH . H 4 HOH B 5 405 31 HOH HOH . H 4 HOH B 6 406 37 HOH HOH . H 4 HOH B 7 407 115 HOH HOH . H 4 HOH B 8 408 682 HOH HOH . H 4 HOH B 9 409 2 HOH HOH . H 4 HOH B 10 410 38 HOH HOH . H 4 HOH B 11 411 577 HOH HOH . H 4 HOH B 12 412 565 HOH HOH . H 4 HOH B 13 413 11 HOH HOH . H 4 HOH B 14 414 264 HOH HOH . H 4 HOH B 15 415 267 HOH HOH . H 4 HOH B 16 416 80 HOH HOH . H 4 HOH B 17 417 12 HOH HOH . H 4 HOH B 18 418 194 HOH HOH . H 4 HOH B 19 419 25 HOH HOH . H 4 HOH B 20 420 353 HOH HOH . H 4 HOH B 21 421 506 HOH HOH . H 4 HOH B 22 422 446 HOH HOH . H 4 HOH B 23 423 355 HOH HOH . H 4 HOH B 24 424 586 HOH HOH . H 4 HOH B 25 425 219 HOH HOH . H 4 HOH B 26 426 350 HOH HOH . H 4 HOH B 27 427 417 HOH HOH . H 4 HOH B 28 428 40 HOH HOH . H 4 HOH B 29 429 349 HOH HOH . H 4 HOH B 30 430 719 HOH HOH . H 4 HOH B 31 431 375 HOH HOH . H 4 HOH B 32 432 572 HOH HOH . H 4 HOH B 33 433 66 HOH HOH . H 4 HOH B 34 434 220 HOH HOH . H 4 HOH B 35 435 15 HOH HOH . H 4 HOH B 36 436 649 HOH HOH . H 4 HOH B 37 437 347 HOH HOH . H 4 HOH B 38 438 374 HOH HOH . H 4 HOH B 39 439 296 HOH HOH . H 4 HOH B 40 440 213 HOH HOH . H 4 HOH B 41 441 377 HOH HOH . H 4 HOH B 42 442 380 HOH HOH . H 4 HOH B 43 443 197 HOH HOH . H 4 HOH B 44 444 56 HOH HOH . H 4 HOH B 45 445 571 HOH HOH . H 4 HOH B 46 446 652 HOH HOH . H 4 HOH B 47 447 387 HOH HOH . H 4 HOH B 48 448 359 HOH HOH . H 4 HOH B 49 449 390 HOH HOH . H 4 HOH B 50 450 403 HOH HOH . H 4 HOH B 51 451 752 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 A1BPC . . . E 2 10.635 -13.549 37.941 1 41.42 ? C29 A1BPC 302 B 1 HETATM 2 C C30 A1BPC . . . E 2 9.39 -14.089 37.837 1 39.1 ? C30 A1BPC 302 B 1 HETATM 3 C C33 A1BPC . . . E 2 11.58 -14.507 37.57 1 43.21 ? C33 A1BPC 302 B 1 HETATM 4 C C01 A1BPC . . . E 2 9.857 -3.888 35.186 1 32.54 ? C01 A1BPC 302 B 1 HETATM 5 C C02 A1BPC . . . E 2 8.96 -4.215 36.41 1 37.65 ? C02 A1BPC 302 B 1 HETATM 6 C C03 A1BPC . . . E 2 9.335 -3.431 37.704 1 39.24 ? C03 A1BPC 302 B 1 HETATM 7 C C04 A1BPC . . . E 2 10.256 -3.973 38.619 1 27.25 ? C04 A1BPC 302 B 1 HETATM 8 C C05 A1BPC . . . E 2 10.565 -3.324 39.782 1 35.44 ? C05 A1BPC 302 B 1 HETATM 9 C C06 A1BPC . . . E 2 10.019 -2.076 40.038 1 31.09 ? C06 A1BPC 302 B 1 HETATM 10 C C07 A1BPC . . . E 2 9.118 -1.505 39.122 1 48.83 ? C07 A1BPC 302 B 1 HETATM 11 C C08 A1BPC . . . E 2 8.768 -2.177 37.958 1 35.67 ? C08 A1BPC 302 B 1 HETATM 12 C C09 A1BPC . . . E 2 8.464 -0.179 39.506 1 46.45 ? C09 A1BPC 302 B 1 HETATM 13 C C13 A1BPC . . . E 2 10.284 -6.314 39.17 1 36.82 ? C13 A1BPC 302 B 1 HETATM 14 C C15 A1BPC . . . E 2 9.163 -7.357 40.985 1 36.78 ? C15 A1BPC 302 B 1 HETATM 15 C C16 A1BPC . . . E 2 9.614 -8.637 40.598 1 42.66 ? C16 A1BPC 302 B 1 HETATM 16 C C17 A1BPC . . . E 2 10.412 -8.723 39.435 1 41.95 ? C17 A1BPC 302 B 1 HETATM 17 C C18 A1BPC . . . E 2 10.764 -7.511 38.724 1 30.09 ? C18 A1BPC 302 B 1 HETATM 18 C C19 A1BPC . . . E 2 11.555 -7.157 37.568 1 25.53 ? C19 A1BPC 302 B 1 HETATM 19 C C21 A1BPC . . . E 2 12.318 -8.099 36.635 1 31.45 ? C21 A1BPC 302 B 1 HETATM 20 C C22 A1BPC . . . E 2 13.81 -7.937 36.682 1 41.37 ? C22 A1BPC 302 B 1 HETATM 21 C C23 A1BPC . . . E 2 11.805 -7.698 35.211 1 36.99 ? C23 A1BPC 302 B 1 HETATM 22 C C25 A1BPC . . . E 2 10.128 -11.068 38.634 1 32.94 ? C25 A1BPC 302 B 1 HETATM 23 C C26 A1BPC . . . E 2 10.985 -12.131 38.414 1 37.15 ? C26 A1BPC 302 B 1 HETATM 24 C C28 A1BPC . . . E 2 12.171 -10.463 39.043 1 42.6 ? C28 A1BPC 302 B 1 HETATM 25 C C34 A1BPC . . . E 2 8.507 -16.302 37.117 1 38.99 ? C34 A1BPC 302 B 1 HETATM 26 N N11 A1BPC . . . E 2 9.152 0.671 40.45 1 30.15 ? N11 A1BPC 302 B 1 HETATM 27 N N12 A1BPC . . . E 2 10.751 -5.327 38.355 1 37.14 ? N12 A1BPC 302 B 1 HETATM 28 N N14 A1BPC . . . E 2 9.486 -6.263 40.28 1 35.58 ? N14 A1BPC 302 B 1 HETATM 29 N N20 A1BPC . . . E 2 11.48 -5.838 37.364 1 41.22 ? N20 A1BPC 302 B 1 HETATM 30 N N24 A1BPC . . . E 2 10.894 -10.064 39.036 1 45.63 ? N24 A1BPC 302 B 1 HETATM 31 N N27 A1BPC . . . E 2 12.217 -11.758 38.65 1 32.4 ? N27 A1BPC 302 B 1 HETATM 32 N N31 A1BPC . . . E 2 9.573 -15.33 37.39 1 50.48 ? N31 A1BPC 302 B 1 HETATM 33 N N32 A1BPC . . . E 2 10.903 -15.604 37.226 1 45.14 ? N32 A1BPC 302 B 1 HETATM 34 O O10 A1BPC . . . E 2 7.329 0.037 39.185 1 32.02 ? O10 A1BPC 302 B 1 HETATM 35 H H301 A1BPC . . . E 2 8.448 -13.611 38.069 1 46.92 ? H301 A1BPC 302 B 1 HETATM 36 H H331 A1BPC . . . E 2 12.654 -14.384 37.563 1 51.85 ? H331 A1BPC 302 B 1 HETATM 37 H H012 A1BPC . . . E 2 10.712 -3.291 35.511 1 39.04 ? H012 A1BPC 302 B 1 HETATM 38 H H013 A1BPC . . . E 2 9.278 -3.325 34.451 1 39.04 ? H013 A1BPC 302 B 1 HETATM 39 H H011 A1BPC . . . E 2 10.211 -4.817 34.736 1 39.04 ? H011 A1BPC 302 B 1 HETATM 40 H H021 A1BPC . . . E 2 9.037 -5.272 36.617 1 45.18 ? H021 A1BPC 302 B 1 HETATM 41 H H022 A1BPC . . . E 2 7.936 -3.982 36.155 1 45.18 ? H022 A1BPC 302 B 1 HETATM 42 H H051 A1BPC . . . E 2 11.234 -3.783 40.499 1 42.53 ? H051 A1BPC 302 B 1 HETATM 43 H H061 A1BPC . . . E 2 10.286 -1.541 40.943 1 37.31 ? H061 A1BPC 302 B 1 HETATM 44 H H081 A1BPC . . . E 2 8.069 -1.738 37.259 1 42.8 ? H081 A1BPC 302 B 1 HETATM 45 H H151 A1BPC . . . E 2 8.542 -7.256 41.871 1 44.13 ? H151 A1BPC 302 B 1 HETATM 46 H H161 A1BPC . . . E 2 9.358 -9.52 41.17 1 51.19 ? H161 A1BPC 302 B 1 HETATM 47 H H211 A1BPC . . . E 2 12.142 -9.128 36.916 1 37.74 ? H211 A1BPC 302 B 1 HETATM 48 H H223 A1BPC . . . E 2 14.081 -6.956 36.3 1 49.64 ? H223 A1BPC 302 B 1 HETATM 49 H H222 A1BPC . . . E 2 14.153 -8.033 37.709 1 49.64 ? H222 A1BPC 302 B 1 HETATM 50 H H221 A1BPC . . . E 2 14.278 -8.705 36.071 1 49.64 ? H221 A1BPC 302 B 1 HETATM 51 H H231 A1BPC . . . E 2 10.721 -7.619 35.225 1 44.39 ? H231 A1BPC 302 B 1 HETATM 52 H H232 A1BPC . . . E 2 12.103 -8.456 34.492 1 44.39 ? H232 A1BPC 302 B 1 HETATM 53 H H233 A1BPC . . . E 2 12.235 -6.741 34.927 1 44.39 ? H233 A1BPC 302 B 1 HETATM 54 H H251 A1BPC . . . E 2 9.056 -11.059 38.505 1 39.52 ? H251 A1BPC 302 B 1 HETATM 55 H H281 A1BPC . . . E 2 13.02 -9.855 39.315 1 51.12 ? H281 A1BPC 302 B 1 HETATM 56 H H343 A1BPC . . . E 2 7.698 -15.812 36.58 1 46.79 ? H343 A1BPC 302 B 1 HETATM 57 H H341 A1BPC . . . E 2 8.13 -16.7 38.056 1 46.79 ? H341 A1BPC 302 B 1 HETATM 58 H H342 A1BPC . . . E 2 8.903 -17.114 36.513 1 46.79 ? H342 A1BPC 302 B 1 HETATM 59 H H111 A1BPC . . . E 2 8.746 1.539 40.732 1 36.18 ? H111 A1BPC 302 B 1 HETATM 60 H H112 A1BPC . . . E 2 10.084 0.427 40.734 1 36.18 ? H112 A1BPC 302 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 60 #