data_9MT3 # _model_server_result.job_id R4Z-XV2oWHhEhMefaZv9TQ _model_server_result.datetime_utc '2025-06-20 11:13:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9MT3 # _exptl.entry_id 9MT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 503.636 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(2R)-butan-2-ylamino]-N-{(3-endo)-8-[5-(cyclopropylcarbonyl)pyridin-2-yl]-8-azabicyclo[3.2.1]oct-3-yl}-2-methylbenzene-1,4-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MT3 _cell.length_a 81.337 _cell.length_b 108.946 _cell.length_c 50.735 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H37 N5 O3' _chem_comp.formula_weight 503.636 _chem_comp.id 99B _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(2R)-butan-2-ylamino]-N-{(3-endo)-8-[5-(cyclopropylcarbonyl)pyridin-2-yl]-8-azabicyclo[3.2.1]oct-3-yl}-2-methylbenzene-1,4-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 99B sing 1 n n C1 C2 99B sing 2 n n C1 C4 99B sing 3 n n N1 C5 99B sing 4 n n O1 C8 99B doub 5 n n C2 C3 99B sing 6 n n N2 C8 99B sing 7 n n N2 C9 99B sing 8 n n O2 C19 99B doub 9 n n N3 C11 99B sing 10 n n N3 C12 99B sing 11 n n N3 C16 99B sing 12 n n O3 C26 99B doub 13 n n N4 C16 99B doub 14 n y N4 C17 99B sing 15 n y C5 C6 99B doub 16 n y C5 C25 99B sing 17 n y N5 C26 99B sing 18 n n C6 C7 99B sing 19 n y C7 C8 99B sing 20 n n C7 C28 99B doub 21 n y C9 C10 99B sing 22 n n C9 C13 99B sing 23 n n C10 C11 99B sing 24 n n C11 C15 99B sing 25 n n C12 C13 99B sing 26 n n C12 C14 99B sing 27 n n C14 C15 99B sing 28 n n C16 C23 99B sing 29 n y C17 C18 99B doub 30 n y C18 C19 99B sing 31 n n C18 C24 99B sing 32 n y C19 C20 99B sing 33 n n C20 C21 99B sing 34 n n C20 C22 99B sing 35 n n C21 C22 99B sing 36 n n C23 C24 99B doub 37 n y C25 C26 99B sing 38 n n C25 C27 99B doub 39 n y C27 C28 99B sing 40 n y C28 C29 99B sing 41 n n C1 H1 99B sing 42 n n N1 HN1 99B sing 43 n n C2 H2 99B sing 44 n n C2 H2A 99B sing 45 n n N2 HN2 99B sing 46 n n C3 H3 99B sing 47 n n C3 H3A 99B sing 48 n n C3 H3B 99B sing 49 n n C4 H4 99B sing 50 n n C4 H4A 99B sing 51 n n C4 H4B 99B sing 52 n n N5 HN5 99B sing 53 n n N5 HN5A 99B sing 54 n n C6 H6 99B sing 55 n n C9 H9 99B sing 56 n n C10 H10 99B sing 57 n n C10 H10A 99B sing 58 n n C11 H11 99B sing 59 n n C12 H12 99B sing 60 n n C13 H13 99B sing 61 n n C13 H13A 99B sing 62 n n C14 H14 99B sing 63 n n C14 H14A 99B sing 64 n n C15 H15 99B sing 65 n n C15 H15A 99B sing 66 n n C17 H17 99B sing 67 n n C20 H20 99B sing 68 n n C21 H21 99B sing 69 n n C21 H21A 99B sing 70 n n C22 H22 99B sing 71 n n C22 H22A 99B sing 72 n n C23 H23 99B sing 73 n n C24 H24 99B sing 74 n n C27 H27 99B sing 75 n n C29 H29 99B sing 76 n n C29 H29A 99B sing 77 n n C29 H29B 99B sing 78 n n # _atom_sites.entry_id 9MT3 _atom_sites.fract_transf_matrix[1][1] 0.012295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 99B A 1 301 301 99B 99B . C 3 HOH A 1 401 289 HOH HOH . C 3 HOH A 2 402 348 HOH HOH . C 3 HOH A 3 403 135 HOH HOH . C 3 HOH A 4 404 400 HOH HOH . C 3 HOH A 5 405 233 HOH HOH . C 3 HOH A 6 406 40 HOH HOH . C 3 HOH A 7 407 225 HOH HOH . C 3 HOH A 8 408 393 HOH HOH . C 3 HOH A 9 409 479 HOH HOH . C 3 HOH A 10 410 204 HOH HOH . C 3 HOH A 11 411 22 HOH HOH . C 3 HOH A 12 412 106 HOH HOH . C 3 HOH A 13 413 186 HOH HOH . C 3 HOH A 14 414 303 HOH HOH . C 3 HOH A 15 415 182 HOH HOH . C 3 HOH A 16 416 86 HOH HOH . C 3 HOH A 17 417 37 HOH HOH . C 3 HOH A 18 418 291 HOH HOH . C 3 HOH A 19 419 12 HOH HOH . C 3 HOH A 20 420 4 HOH HOH . C 3 HOH A 21 421 481 HOH HOH . C 3 HOH A 22 422 146 HOH HOH . C 3 HOH A 23 423 196 HOH HOH . C 3 HOH A 24 424 181 HOH HOH . C 3 HOH A 25 425 190 HOH HOH . C 3 HOH A 26 426 226 HOH HOH . C 3 HOH A 27 427 6 HOH HOH . C 3 HOH A 28 428 189 HOH HOH . C 3 HOH A 29 429 111 HOH HOH . C 3 HOH A 30 430 27 HOH HOH . C 3 HOH A 31 431 212 HOH HOH . C 3 HOH A 32 432 245 HOH HOH . C 3 HOH A 33 433 304 HOH HOH . C 3 HOH A 34 434 188 HOH HOH . C 3 HOH A 35 435 47 HOH HOH . C 3 HOH A 36 436 290 HOH HOH . C 3 HOH A 37 437 9 HOH HOH . C 3 HOH A 38 438 197 HOH HOH . C 3 HOH A 39 439 194 HOH HOH . C 3 HOH A 40 440 10 HOH HOH . C 3 HOH A 41 441 29 HOH HOH . C 3 HOH A 42 442 61 HOH HOH . C 3 HOH A 43 443 26 HOH HOH . C 3 HOH A 44 444 268 HOH HOH . C 3 HOH A 45 445 98 HOH HOH . C 3 HOH A 46 446 201 HOH HOH . C 3 HOH A 47 447 92 HOH HOH . C 3 HOH A 48 448 185 HOH HOH . C 3 HOH A 49 449 200 HOH HOH . C 3 HOH A 50 450 220 HOH HOH . C 3 HOH A 51 451 7 HOH HOH . C 3 HOH A 52 452 20 HOH HOH . C 3 HOH A 53 453 193 HOH HOH . C 3 HOH A 54 454 184 HOH HOH . C 3 HOH A 55 455 33 HOH HOH . C 3 HOH A 56 456 129 HOH HOH . C 3 HOH A 57 457 30 HOH HOH . C 3 HOH A 58 458 302 HOH HOH . C 3 HOH A 59 459 296 HOH HOH . C 3 HOH A 60 460 450 HOH HOH . C 3 HOH A 61 461 180 HOH HOH . C 3 HOH A 62 462 415 HOH HOH . C 3 HOH A 63 463 255 HOH HOH . C 3 HOH A 64 464 308 HOH HOH . C 3 HOH A 65 465 42 HOH HOH . C 3 HOH A 66 466 286 HOH HOH . C 3 HOH A 67 467 411 HOH HOH . C 3 HOH A 68 468 239 HOH HOH . C 3 HOH A 69 469 15 HOH HOH . C 3 HOH A 70 470 1 HOH HOH . C 3 HOH A 71 471 14 HOH HOH . C 3 HOH A 72 472 206 HOH HOH . C 3 HOH A 73 473 34 HOH HOH . C 3 HOH A 74 474 209 HOH HOH . C 3 HOH A 75 475 46 HOH HOH . C 3 HOH A 76 476 2 HOH HOH . C 3 HOH A 77 477 485 HOH HOH . C 3 HOH A 78 478 453 HOH HOH . C 3 HOH A 79 479 8 HOH HOH . C 3 HOH A 80 480 69 HOH HOH . C 3 HOH A 81 481 54 HOH HOH . C 3 HOH A 82 482 97 HOH HOH . C 3 HOH A 83 483 484 HOH HOH . C 3 HOH A 84 484 301 HOH HOH . C 3 HOH A 85 485 192 HOH HOH . C 3 HOH A 86 486 409 HOH HOH . C 3 HOH A 87 487 18 HOH HOH . C 3 HOH A 88 488 198 HOH HOH . C 3 HOH A 89 489 183 HOH HOH . C 3 HOH A 90 490 213 HOH HOH . C 3 HOH A 91 491 401 HOH HOH . C 3 HOH A 92 492 307 HOH HOH . C 3 HOH A 93 493 483 HOH HOH . C 3 HOH A 94 494 427 HOH HOH . C 3 HOH A 95 495 143 HOH HOH . C 3 HOH A 96 496 191 HOH HOH . C 3 HOH A 97 497 294 HOH HOH . C 3 HOH A 98 498 482 HOH HOH . C 3 HOH A 99 499 471 HOH HOH . C 3 HOH A 100 500 408 HOH HOH . C 3 HOH A 101 501 349 HOH HOH . C 3 HOH A 102 502 217 HOH HOH . C 3 HOH A 103 503 417 HOH HOH . C 3 HOH A 104 504 195 HOH HOH . C 3 HOH A 105 505 421 HOH HOH . C 3 HOH A 106 506 224 HOH HOH . C 3 HOH A 107 507 215 HOH HOH . C 3 HOH A 108 508 354 HOH HOH . C 3 HOH A 109 509 407 HOH HOH . C 3 HOH A 110 510 394 HOH HOH . C 3 HOH A 111 511 455 HOH HOH . C 3 HOH A 112 512 287 HOH HOH . C 3 HOH A 113 513 480 HOH HOH . C 3 HOH A 114 514 364 HOH HOH . C 3 HOH A 115 515 335 HOH HOH . C 3 HOH A 116 516 134 HOH HOH . C 3 HOH A 117 517 478 HOH HOH . C 3 HOH A 118 518 477 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 99B . . . B 2 25.157 17.158 -14.736 1 20 ? C1 99B 301 A 1 HETATM 2 N N1 99B . . . B 2 24.093 16.17 -14.564 1 20 ? N1 99B 301 A 1 HETATM 3 O O1 99B . . . B 2 23.618 15.896 -9.345 1 20 ? O1 99B 301 A 1 HETATM 4 C C2 99B . . . B 2 26.498 16.438 -14.833 1 20 ? C2 99B 301 A 1 HETATM 5 N N2 99B . . . B 2 25.383 14.486 -9.205 1 20 ? N2 99B 301 A 1 HETATM 6 O O2 99B . . . B 2 27.902 15.476 -0.125 1 20 ? O2 99B 301 A 1 HETATM 7 C C3 99B . . . B 2 27.641 17.341 -15.189 1 20 ? C3 99B 301 A 1 HETATM 8 N N3 99B . . . B 2 26.607 13.004 -5.789 1 20 ? N3 99B 301 A 1 HETATM 9 O O3 99B . . . B 2 24.605 13.669 -16.188 1 20 ? O3 99B 301 A 1 HETATM 10 C C4 99B . . . B 2 24.884 18.008 -15.963 1 20 ? C4 99B 301 A 1 HETATM 11 N N4 99B . . . B 2 26.336 14.239 -3.831 1 20 ? N4 99B 301 A 1 HETATM 12 C C5 99B . . . B 2 24.056 15.213 -13.597 1 20 ? C5 99B 301 A 1 HETATM 13 N N5 99B . . . B 2 22.637 12.727 -15.694 1 20 ? N5 99B 301 A 1 HETATM 14 C C6 99B . . . B 2 24.208 15.581 -12.266 1 20 ? C6 99B 301 A 1 HETATM 15 C C7 99B . . . B 2 24.158 14.613 -11.27 1 20 ? C7 99B 301 A 1 HETATM 16 C C8 99B . . . B 2 24.349 15.049 -9.849 1 20 ? C8 99B 301 A 1 HETATM 17 C C9 99B . . . B 2 25.87 14.895 -7.891 1 20 ? C9 99B 301 A 1 HETATM 18 C C10 99B . . . B 2 27.277 14.354 -7.676 1 20 ? C10 99B 301 A 1 HETATM 19 C C11 99B . . . B 2 27.308 12.959 -7.07 1 20 ? C11 99B 301 A 1 HETATM 20 C C12 99B . . . B 2 25.204 13.094 -6.195 1 20 ? C12 99B 301 A 1 HETATM 21 C C13 99B . . . B 2 24.922 14.473 -6.774 1 20 ? C13 99B 301 A 1 HETATM 22 C C14 99B . . . B 2 25.108 11.958 -7.203 1 20 ? C14 99B 301 A 1 HETATM 23 C C15 99B . . . B 2 26.529 11.874 -7.805 1 20 ? C15 99B 301 A 1 HETATM 24 C C16 99B . . . B 2 27.152 13.557 -4.634 1 20 ? C16 99B 301 A 1 HETATM 25 C C17 99B . . . B 2 26.821 14.783 -2.709 1 20 ? C17 99B 301 A 1 HETATM 26 C C18 99B . . . B 2 28.149 14.67 -2.325 1 20 ? C18 99B 301 A 1 HETATM 27 C C19 99B . . . B 2 28.651 15.288 -1.072 1 20 ? C19 99B 301 A 1 HETATM 28 C C20 99B . . . B 2 30.075 15.672 -0.979 1 20 ? C20 99B 301 A 1 HETATM 29 C C21 99B . . . B 2 31.035 14.726 -0.313 1 20 ? C21 99B 301 A 1 HETATM 30 C C22 99B . . . B 2 30.676 15.982 0.364 1 20 ? C22 99B 301 A 1 HETATM 31 C C23 99B . . . B 2 28.492 13.393 -4.323 1 20 ? C23 99B 301 A 1 HETATM 32 C C24 99B . . . B 2 28.997 13.951 -3.167 1 20 ? C24 99B 301 A 1 HETATM 33 C C25 99B . . . B 2 23.862 13.857 -13.941 1 20 ? C25 99B 301 A 1 HETATM 34 C C26 99B . . . B 2 23.716 13.416 -15.362 1 20 ? C26 99B 301 A 1 HETATM 35 C C27 99B . . . B 2 23.83 12.91 -12.921 1 20 ? C27 99B 301 A 1 HETATM 36 C C28 99B . . . B 2 23.972 13.268 -11.607 1 20 ? C28 99B 301 A 1 HETATM 37 C C29 99B . . . B 2 23.92 12.172 -10.573 1 20 ? C29 99B 301 A 1 HETATM 38 H H1 99B . . . B 2 25.167 17.754 -13.944 1 20 ? H1 99B 301 A 1 HETATM 39 H HN1 99B . . . B 2 23.426 16.21 -15.133 1 20 ? HN1 99B 301 A 1 HETATM 40 H H2 99B . . . B 2 26.423 15.734 -15.51 1 20 ? H2 99B 301 A 1 HETATM 41 H H2A 99B . . . B 2 26.686 16.011 -13.971 1 20 ? H2A 99B 301 A 1 HETATM 42 H HN2 99B . . . B 2 25.825 13.862 -9.606 1 20 ? HN2 99B 301 A 1 HETATM 43 H H3 99B . . . B 2 27.683 17.449 -16.154 1 20 ? H3 99B 301 A 1 HETATM 44 H H3A 99B . . . B 2 28.473 16.952 -14.871 1 20 ? H3A 99B 301 A 1 HETATM 45 H H3B 99B . . . B 2 27.51 18.21 -14.771 1 20 ? H3B 99B 301 A 1 HETATM 46 H H4 99B . . . B 2 25.199 17.542 -16.756 1 20 ? H4 99B 301 A 1 HETATM 47 H H4A 99B . . . B 2 25.346 18.859 -15.881 1 20 ? H4A 99B 301 A 1 HETATM 48 H H4B 99B . . . B 2 23.927 18.166 -16.041 1 20 ? H4B 99B 301 A 1 HETATM 49 H HN5 99B . . . B 2 21.971 13.123 -16.132 1 20 ? HN5 99B 301 A 1 HETATM 50 H HN5A 99B . . . B 2 22.57 11.866 -15.475 1 20 ? HN5A 99B 301 A 1 HETATM 51 H H6 99B . . . B 2 24.336 16.483 -12.042 1 20 ? H6 99B 301 A 1 HETATM 52 H H9 99B . . . B 2 25.926 15.882 -7.878 1 20 ? H9 99B 301 A 1 HETATM 53 H H10 99B . . . B 2 27.74 14.335 -8.537 1 20 ? H10 99B 301 A 1 HETATM 54 H H10A 99B . . . B 2 27.764 14.966 -7.089 1 20 ? H10A 99B 301 A 1 HETATM 55 H H11 99B . . . B 2 28.244 12.672 -6.935 1 20 ? H11 99B 301 A 1 HETATM 56 H H12 99B . . . B 2 24.615 12.921 -5.421 1 20 ? H12 99B 301 A 1 HETATM 57 H H13 99B . . . B 2 24.007 14.484 -7.116 1 20 ? H13 99B 301 A 1 HETATM 58 H H13A 99B . . . B 2 24.974 15.132 -6.055 1 20 ? H13A 99B 301 A 1 HETATM 59 H H14 99B . . . B 2 24.445 12.164 -7.891 1 20 ? H14 99B 301 A 1 HETATM 60 H H14A 99B . . . B 2 24.863 11.119 -6.76 1 20 ? H14A 99B 301 A 1 HETATM 61 H H15 99B . . . B 2 26.925 10.993 -7.643 1 20 ? H15 99B 301 A 1 HETATM 62 H H15A 99B . . . B 2 26.514 12.047 -8.769 1 20 ? H15A 99B 301 A 1 HETATM 63 H H17 99B . . . B 2 26.236 15.262 -2.159 1 20 ? H17 99B 301 A 1 HETATM 64 H H20 99B . . . B 2 30.427 16.183 -1.743 1 20 ? H20 99B 301 A 1 HETATM 65 H H21 99B . . . B 2 30.672 13.898 0.045 1 20 ? H21 99B 301 A 1 HETATM 66 H H21A 99B . . . B 2 31.928 14.653 -0.689 1 20 ? H21A 99B 301 A 1 HETATM 67 H H22 99B . . . B 2 30.093 15.927 1.14 1 20 ? H22 99B 301 A 1 HETATM 68 H H22A 99B . . . B 2 31.348 16.683 0.405 1 20 ? H22A 99B 301 A 1 HETATM 69 H H23 99B . . . B 2 29.057 12.905 -4.896 1 20 ? H23 99B 301 A 1 HETATM 70 H H24 99B . . . B 2 29.905 13.846 -2.949 1 20 ? H24 99B 301 A 1 HETATM 71 H H27 99B . . . B 2 23.703 12 -13.134 1 20 ? H27 99B 301 A 1 HETATM 72 H H29 99B . . . B 2 23.551 11.368 -10.972 1 20 ? H29 99B 301 A 1 HETATM 73 H H29A 99B . . . B 2 23.36 12.45 -9.831 1 20 ? H29A 99B 301 A 1 HETATM 74 H H29B 99B . . . B 2 24.817 11.988 -10.25 1 20 ? H29B 99B 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 74 #