data_9MVM # _model_server_result.job_id t2TXAz4ErwU7kmaIPYL1og _model_server_result.datetime_utc '2025-07-26 08:22:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9MVM # _exptl.entry_id 9MVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.808 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(4-chlorothiophen-2-yl)methyl]-3-[(2-oxo-1,2-dihydropyridin-3-yl)methyl]-1,3-diazinane-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.03 _cell.angle_gamma 90 _cell.entry_id 9MVM _cell.length_a 115.735 _cell.length_b 53.829 _cell.length_c 45.277 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -8.662529 0 44.440604 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 152 A SER 144 1_555 A N CSO 153 A CSO 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C CSO 153 A CSO 145 1_555 A N GLY 154 A GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C15 H14 Cl N3 O3 S' _chem_comp.formula_weight 351.808 _chem_comp.id A1BTM _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(4-chlorothiophen-2-yl)methyl]-3-[(2-oxo-1,2-dihydropyridin-3-yl)methyl]-1,3-diazinane-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S23 C18 A1BTM sing 1 n y S23 C22 A1BTM sing 2 n y C17 C18 A1BTM sing 3 n n C17 N05 A1BTM sing 4 n n C04 N05 A1BTM sing 5 n n C04 C03 A1BTM sing 6 n n C18 C19 A1BTM doub 7 n y N05 C06 A1BTM sing 8 n n C03 C02 A1BTM sing 9 n n C22 C20 A1BTM doub 10 n y C19 C20 A1BTM sing 11 n y C20 CL21 A1BTM sing 12 n n C06 O16 A1BTM doub 13 n n C06 N07 A1BTM sing 14 n n C02 O01 A1BTM doub 15 n n C02 N07 A1BTM sing 16 n n N07 C08 A1BTM sing 17 n n C10 C11 A1BTM sing 18 n n C10 C09 A1BTM doub 19 n n C11 C12 A1BTM doub 20 n n C09 C08 A1BTM sing 21 n n C09 C14 A1BTM sing 22 n n C12 N13 A1BTM sing 23 n n C14 N13 A1BTM sing 24 n n C14 O15 A1BTM doub 25 n n C10 H1 A1BTM sing 26 n n C17 H2 A1BTM sing 27 n n C17 H3 A1BTM sing 28 n n C22 H4 A1BTM sing 29 n n C03 H5 A1BTM sing 30 n n C04 H6 A1BTM sing 31 n n C08 H7 A1BTM sing 32 n n C08 H8 A1BTM sing 33 n n C11 H9 A1BTM sing 34 n n C12 H10 A1BTM sing 35 n n C19 H11 A1BTM sing 36 n n N13 H12 A1BTM sing 37 n n C03 H13 A1BTM sing 38 n n C04 H14 A1BTM sing 39 n n # _atom_sites.entry_id 9MVM _atom_sites.fract_transf_matrix[1][1] 0.00864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BTM A 1 401 306 A1BTM LIG . C 3 HOH A 1 501 332 HOH HOH . C 3 HOH A 2 502 336 HOH HOH . C 3 HOH A 3 503 314 HOH HOH . C 3 HOH A 4 504 335 HOH HOH . C 3 HOH A 5 505 316 HOH HOH . C 3 HOH A 6 506 328 HOH HOH . C 3 HOH A 7 507 325 HOH HOH . C 3 HOH A 8 508 311 HOH HOH . C 3 HOH A 9 509 309 HOH HOH . C 3 HOH A 10 510 329 HOH HOH . C 3 HOH A 11 511 319 HOH HOH . C 3 HOH A 12 512 310 HOH HOH . C 3 HOH A 13 513 308 HOH HOH . C 3 HOH A 14 514 312 HOH HOH . C 3 HOH A 15 515 321 HOH HOH . C 3 HOH A 16 516 315 HOH HOH . C 3 HOH A 17 517 339 HOH HOH . C 3 HOH A 18 518 324 HOH HOH . C 3 HOH A 19 519 313 HOH HOH . C 3 HOH A 20 520 338 HOH HOH . C 3 HOH A 21 521 307 HOH HOH . C 3 HOH A 22 522 327 HOH HOH . C 3 HOH A 23 523 317 HOH HOH . C 3 HOH A 24 524 331 HOH HOH . C 3 HOH A 25 525 323 HOH HOH . C 3 HOH A 26 526 330 HOH HOH . C 3 HOH A 27 527 322 HOH HOH . C 3 HOH A 28 528 320 HOH HOH . C 3 HOH A 29 529 333 HOH HOH . C 3 HOH A 30 530 334 HOH HOH . C 3 HOH A 31 531 318 HOH HOH . C 3 HOH A 32 532 337 HOH HOH . C 3 HOH A 33 533 326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1BTM . . . B 2 -10.396 -25.919 1.79 1 39.03 ? C10 A1BTM 401 A 1 HETATM 2 C C17 A1BTM . . . B 2 -14.822 -26.442 -1.06 0.7 47.82 ? C17 A1BTM 401 A 1 HETATM 3 C C20 A1BTM . . . B 2 -18.101 -27.709 0.585 1 46.1 ? C20 A1BTM 401 A 1 HETATM 4 C C22 A1BTM . . . B 2 -18.683 -26.732 -0.275 0.49 44.19 ? C22 A1BTM 401 A 1 HETATM 5 C C02 A1BTM . . . B 2 -11.853 -28.814 1.103 0.39 41.56 ? C02 A1BTM 401 A 1 HETATM 6 C C03 A1BTM . . . B 2 -12.199 -29.188 -0.302 1 49.4 ? C03 A1BTM 401 A 1 HETATM 7 C C04 A1BTM . . . B 2 -13.225 -28.38 -1.025 1 50.25 ? C04 A1BTM 401 A 1 HETATM 8 C C06 A1BTM . . . B 2 -13.501 -26.883 1.025 0.87 44.88 ? C06 A1BTM 401 A 1 HETATM 9 C C08 A1BTM . . . B 2 -12.159 -27.335 3.098 1 37.41 ? C08 A1BTM 401 A 1 HETATM 10 C C09 A1BTM . . . B 2 -11.046 -26.325 3.066 1 38.51 ? C09 A1BTM 401 A 1 HETATM 11 C C11 A1BTM . . . B 2 -9.294 -24.907 1.823 1 38.85 ? C11 A1BTM 401 A 1 HETATM 12 C C12 A1BTM . . . B 2 -8.875 -24.293 3.152 1 43.45 ? C12 A1BTM 401 A 1 HETATM 13 C C14 A1BTM . . . B 2 -10.636 -25.706 4.395 0.73 40.5 ? C14 A1BTM 401 A 1 HETATM 14 C C18 A1BTM . . . B 2 -16.226 -26.748 -0.572 1 46.71 ? C18 A1BTM 401 A 1 HETATM 15 C C19 A1BTM . . . B 2 -16.59 -27.736 0.403 1 42.2 ? C19 A1BTM 401 A 1 HETATM 16 N N05 A1BTM . . . B 2 -13.846 -27.246 -0.361 0.77 46.87 ? N05 A1BTM 401 A 1 HETATM 17 N N07 A1BTM . . . B 2 -12.493 -27.68 1.744 0.97 43.09 ? N07 A1BTM 401 A 1 HETATM 18 N N13 A1BTM . . . B 2 -9.549 -24.712 4.424 0.91 39.6 ? N13 A1BTM 401 A 1 HETATM 19 O O01 A1BTM . . . B 2 -11.054 -29.448 1.698 0.74 39.26 ? O01 A1BTM 401 A 1 HETATM 20 O O15 A1BTM . . . B 2 -11.18 -26.039 5.398 0.65 39.56 ? O15 A1BTM 401 A 1 HETATM 21 O O16 A1BTM . . . B 2 -14.027 -25.952 1.534 1 44.45 ? O16 A1BTM 401 A 1 HETATM 22 S S23 A1BTM . . . B 2 -17.538 -25.976 -1.109 0.44 47.47 ? S23 A1BTM 401 A 1 HETATM 23 CL CL21 A1BTM . . . B 2 -19.031 -28.733 1.703 0.53 42.13 ? CL21 A1BTM 401 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #