data_9MVP # _model_server_result.job_id Gf7-uA5TWc5XVekGkgynDg _model_server_result.datetime_utc '2025-07-28 04:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9MVP # _exptl.entry_id 9MVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.428 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3M,5P)-5-(1H-1,2,3-benzotriazol-1-yl)-3-(isoquinolin-4-yl)-6-methyl-1-(prop-2-en-1-yl)pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.44 _cell.angle_gamma 90 _cell.entry_id 9MVP _cell.length_a 115.595 _cell.length_b 53.787 _cell.length_c 44.964 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -8.918234 0 44.070698 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 144 A SER 144 1_555 A N CSO 145 A CSO 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 A C CSO 145 A CSO 145 1_555 A N GLY 146 A GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 A SG CSO 145 A CSO 145 1_555 B C02 A1BTP . A A1BTP 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.83 ? # _chem_comp.formula 'C23 H18 N6 O2' _chem_comp.formula_weight 410.428 _chem_comp.id A1BTP _chem_comp.mon_nstd_flag . _chem_comp.name (3M,5P)-5-(1H-1,2,3-benzotriazol-1-yl)-3-(isoquinolin-4-yl)-6-methyl-1-(prop-2-en-1-yl)pyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3M,5P)-5-(1H-1,2,3-benzotriazol-1-yl)-3-(isoquinolin-4-yl)-6-methyl-1-(prop-2-yn-1-yl)pyrimidine-2,4(1H,3H)-dione, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 N09 A1BTP doub 1 n y N10 C11 A1BTP sing 2 n y N09 N08 A1BTP sing 3 n y C06 C05 A1BTP sing 4 n n C11 C12 A1BTP doub 5 n y C11 C16 A1BTP sing 6 n y C12 C13 A1BTP sing 7 n y N08 C16 A1BTP sing 8 n y N08 C07 A1BTP sing 9 n n C16 C15 A1BTP doub 10 n y C05 C07 A1BTP doub 11 n n C05 N04 A1BTP sing 12 n n C13 C14 A1BTP doub 13 n y C07 C17 A1BTP sing 14 n n C03 N04 A1BTP sing 15 n n C03 C02 A1BTP sing 16 n n N04 C30 A1BTP sing 17 n n C27 C28 A1BTP doub 18 n y C27 C26 A1BTP sing 19 n y C15 C14 A1BTP sing 20 n y C28 C29 A1BTP sing 21 n y C17 O18 A1BTP doub 22 n n C17 N19 A1BTP sing 23 n n C30 N19 A1BTP sing 24 n n C30 O31 A1BTP doub 25 n n N19 C20 A1BTP sing 26 n n C26 C25 A1BTP doub 27 n y C02 C01 A1BTP doub 28 n n C29 C20 A1BTP doub 29 n y C29 C24 A1BTP sing 30 n y C20 C21 A1BTP sing 31 n y C25 C24 A1BTP sing 32 n y C24 C23 A1BTP doub 33 n y C21 N22 A1BTP doub 34 n y C23 N22 A1BTP sing 35 n y C13 H1 A1BTP sing 36 n n C15 H2 A1BTP sing 37 n n C21 H3 A1BTP sing 38 n n C26 H4 A1BTP sing 39 n n C28 H5 A1BTP sing 40 n n C01 H6 A1BTP sing 41 n n C01 H7 A1BTP sing 42 n n C02 H8 A1BTP sing 43 n n C03 H9 A1BTP sing 44 n n C03 H10 A1BTP sing 45 n n C06 H11 A1BTP sing 46 n n C06 H12 A1BTP sing 47 n n C06 H13 A1BTP sing 48 n n C12 H14 A1BTP sing 49 n n C14 H15 A1BTP sing 50 n n C23 H16 A1BTP sing 51 n n C25 H17 A1BTP sing 52 n n C27 H18 A1BTP sing 53 n n # _atom_sites.entry_id 9MVP _atom_sites.fract_transf_matrix[1][1] 0.008651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001751 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BTP A 1 401 401 A1BTP LIG . C 3 EDO A 1 402 307 EDO EDO . D 4 HOH A 1 501 326 HOH HOH . D 4 HOH A 2 502 316 HOH HOH . D 4 HOH A 3 503 309 HOH HOH . D 4 HOH A 4 504 312 HOH HOH . D 4 HOH A 5 505 314 HOH HOH . D 4 HOH A 6 506 317 HOH HOH . D 4 HOH A 7 507 328 HOH HOH . D 4 HOH A 8 508 315 HOH HOH . D 4 HOH A 9 509 310 HOH HOH . D 4 HOH A 10 510 320 HOH HOH . D 4 HOH A 11 511 311 HOH HOH . D 4 HOH A 12 512 313 HOH HOH . D 4 HOH A 13 513 321 HOH HOH . D 4 HOH A 14 514 318 HOH HOH . D 4 HOH A 15 515 325 HOH HOH . D 4 HOH A 16 516 322 HOH HOH . D 4 HOH A 17 517 327 HOH HOH . D 4 HOH A 18 518 323 HOH HOH . D 4 HOH A 19 519 308 HOH HOH . D 4 HOH A 20 520 319 HOH HOH . D 4 HOH A 21 521 329 HOH HOH . D 4 HOH A 22 522 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1BTP . B . B 2 -19.032 -27.241 -0.245 0.8 59.71 ? C13 A1BTP 401 A 1 HETATM 2 C C15 A1BTP . B . B 2 -16.9 -28.069 0.569 0.8 53.78 ? C15 A1BTP 401 A 1 HETATM 3 C C17 A1BTP . B . B 2 -13.258 -27.076 0.742 0.8 60.05 ? C17 A1BTP 401 A 1 HETATM 4 C C20 A1BTP . B . B 2 -11.631 -26.786 2.37 0.8 48.94 ? C20 A1BTP 401 A 1 HETATM 5 C C21 A1BTP . B . B 2 -12.104 -26.817 3.683 0.8 43.53 ? C21 A1BTP 401 A 1 HETATM 6 C C24 A1BTP . B . B 2 -9.92 -25.233 3.047 0.8 50.48 ? C24 A1BTP 401 A 1 HETATM 7 C C26 A1BTP . B . B 2 -8.28 -24.346 1.457 0.8 46.4 ? C26 A1BTP 401 A 1 HETATM 8 C C28 A1BTP . B . B 2 -9.975 -25.912 0.714 0.8 57.69 ? C28 A1BTP 401 A 1 HETATM 9 C C01 A1BTP . B . B 2 -11.33 -32.898 1.629 0.8 58.01 ? C01 A1BTP 401 A 1 HETATM 10 C C02 A1BTP . B . B 2 -12.007 -31.779 1.461 0.8 61.94 ? C02 A1BTP 401 A 1 HETATM 11 C C03 A1BTP . B . B 2 -11.797 -30.934 0.188 0.8 59.18 ? C03 A1BTP 401 A 1 HETATM 12 C C05 A1BTP . B . B 2 -13.386 -29.159 -0.403 0.8 53.69 ? C05 A1BTP 401 A 1 HETATM 13 C C06 A1BTP . B . B 2 -14.02 -30.106 -1.447 0.8 53.73 ? C06 A1BTP 401 A 1 HETATM 14 C C07 A1BTP . B . B 2 -13.882 -27.868 -0.216 0.8 57.3 ? C07 A1BTP 401 A 1 HETATM 15 C C11 A1BTP . B . B 2 -16.958 -26.676 -1.418 0.8 62.46 ? C11 A1BTP 401 A 1 HETATM 16 C C12 A1BTP . B . B 2 -18.378 -26.583 -1.294 0.8 64.22 ? C12 A1BTP 401 A 1 HETATM 17 C C14 A1BTP . B . B 2 -18.295 -27.988 0.687 0.8 54.81 ? C14 A1BTP 401 A 1 HETATM 18 C C16 A1BTP . B . B 2 -16.229 -27.402 -0.502 0.8 55.28 ? C16 A1BTP 401 A 1 HETATM 19 C C23 A1BTP . B . B 2 -10.46 -25.312 4.368 0.8 49.74 ? C23 A1BTP 401 A 1 HETATM 20 C C25 A1BTP . B . B 2 -8.79 -24.403 2.758 0.8 53.08 ? C25 A1BTP 401 A 1 HETATM 21 C C27 A1BTP . B . B 2 -8.87 -25.1 0.433 0.8 44.39 ? C27 A1BTP 401 A 1 HETATM 22 C C29 A1BTP . B . B 2 -10.497 -25.969 2.047 0.8 56.86 ? C29 A1BTP 401 A 1 HETATM 23 C C30 A1BTP . B . B 2 -11.761 -28.772 1.254 0.8 54.46 ? C30 A1BTP 401 A 1 HETATM 24 N N04 A1BTP . B . B 2 -12.328 -29.572 0.332 0.8 59.36 ? N04 A1BTP 401 A 1 HETATM 25 N N08 A1BTP . B . B 2 -14.911 -27.326 -0.872 0.8 49.22 ? N08 A1BTP 401 A 1 HETATM 26 N N09 A1BTP . B . B 2 -14.814 -26.535 -1.988 0.8 63.85 ? N09 A1BTP 401 A 1 HETATM 27 N N10 A1BTP . B . B 2 -16.089 -26.146 -2.329 0.8 57.99 ? N10 A1BTP 401 A 1 HETATM 28 N N19 A1BTP . B . B 2 -12.225 -27.54 1.442 0.8 54.14 ? N19 A1BTP 401 A 1 HETATM 29 N N22 A1BTP . B . B 2 -11.517 -26.087 4.63 0.8 44.83 ? N22 A1BTP 401 A 1 HETATM 30 O O18 A1BTP . B . B 2 -13.657 -25.975 0.925 0.8 52.52 ? O18 A1BTP 401 A 1 HETATM 31 O O31 A1BTP . B . B 2 -10.845 -29.148 1.903 0.8 55.75 ? O31 A1BTP 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 655 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #