data_9MY7 # _model_server_result.job_id 3xIMxNbxl9clwGDkHtywWQ _model_server_result.datetime_utc '2025-06-21 14:32:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9my7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 9MY7 # _exptl.entry_id 9MY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MY7 _cell.length_a 65.294 _cell.length_b 143.346 _cell.length_c 149.199 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,Q 1 1 B,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 73 B GLN 53 1_555 H CA CA . B CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 A OE1 GLU 78 B GLU 58 1_555 H CA CA . B CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 A OE2 GLU 78 B GLU 58 1_555 H CA CA . B CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc4 A O GLN 325 B GLN 305 1_555 F CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 A O LEU 327 B LEU 307 1_555 F CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc6 A O GLU 347 B GLU 327 1_555 G CA CA . B CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc7 A O ASN 350 B ASN 330 1_555 F CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 E CA CA . B CA 603 1_555 Q O HOH . B HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc9 E CA CA . B CA 603 1_555 Q O HOH . B HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc10 E CA CA . B CA 603 1_555 Q O HOH . B HOH 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc11 F CA CA . B CA 604 1_555 Q O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc12 F CA CA . B CA 604 1_655 B OD1 ASP 322 A ASP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc13 F CA CA . B CA 604 1_655 B OD2 ASP 322 A ASP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc14 G CA CA . B CA 605 1_555 Q O HOH . B HOH 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc15 H CA CA . B CA 606 1_555 Q O HOH . B HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc16 B O GLN 73 A GLN 53 1_555 N CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc17 B O GLY 94 A GLY 74 1_555 P CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc18 B O GLN 325 A GLN 305 1_555 O CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc19 B O LEU 327 A LEU 307 1_555 O CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc20 B O ASN 350 A ASN 330 1_555 O CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc21 B O SER 438 A SER 418 1_555 M CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc22 M CA CA . A CA 604 1_555 R O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc23 M CA CA . A CA 604 1_555 R O HOH . A HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc24 M CA CA . A CA 604 1_555 R O HOH . A HOH 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc25 M CA CA . A CA 604 1_555 R O HOH . A HOH 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc26 N CA CA . A CA 605 1_555 R O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc27 N CA CA . A CA 605 1_555 R O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc28 O CA CA . A CA 606 1_555 R O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc29 O CA CA . A CA 606 1_555 R O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc30 O CA CA . A CA 606 1_555 R O HOH . A HOH 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc31 P CA CA . A CA 607 1_555 R O HOH . A HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9MY7 _atom_sites.fract_transf_matrix[1][1] 0.015315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BHA B 1 601 501 BHA BHA . D 3 EDO B 1 602 502 EDO EDO . E 4 CA B 1 603 2 CA CA . F 4 CA B 1 604 5 CA CA . G 4 CA B 1 605 6 CA CA . H 4 CA B 1 606 7 CA CA . I 4 CA B 1 607 11 CA CA . J 2 BHA A 1 601 501 BHA BHA . K 3 EDO A 1 602 502 EDO EDO . L 3 EDO A 1 603 503 EDO EDO . M 4 CA A 1 604 1 CA CA . N 4 CA A 1 605 3 CA CA . O 4 CA A 1 606 4 CA CA . P 4 CA A 1 607 8 CA CA . Q 5 HOH B 1 701 41 HOH HOH . Q 5 HOH B 2 702 185 HOH HOH . Q 5 HOH B 3 703 149 HOH HOH . Q 5 HOH B 4 704 197 HOH HOH . Q 5 HOH B 5 705 184 HOH HOH . Q 5 HOH B 6 706 194 HOH HOH . Q 5 HOH B 7 707 206 HOH HOH . Q 5 HOH B 8 708 177 HOH HOH . Q 5 HOH B 9 709 126 HOH HOH . Q 5 HOH B 10 710 64 HOH HOH . Q 5 HOH B 11 711 180 HOH HOH . Q 5 HOH B 12 712 193 HOH HOH . Q 5 HOH B 13 713 174 HOH HOH . Q 5 HOH B 14 714 18 HOH HOH . Q 5 HOH B 15 715 181 HOH HOH . Q 5 HOH B 16 716 176 HOH HOH . Q 5 HOH B 17 717 98 HOH HOH . Q 5 HOH B 18 718 139 HOH HOH . Q 5 HOH B 19 719 195 HOH HOH . Q 5 HOH B 20 720 172 HOH HOH . Q 5 HOH B 21 721 163 HOH HOH . Q 5 HOH B 22 722 138 HOH HOH . Q 5 HOH B 23 723 136 HOH HOH . Q 5 HOH B 24 724 164 HOH HOH . Q 5 HOH B 25 725 182 HOH HOH . Q 5 HOH B 26 726 199 HOH HOH . Q 5 HOH B 27 727 132 HOH HOH . Q 5 HOH B 28 728 161 HOH HOH . Q 5 HOH B 29 729 143 HOH HOH . Q 5 HOH B 30 730 190 HOH HOH . Q 5 HOH B 31 731 123 HOH HOH . Q 5 HOH B 32 732 94 HOH HOH . Q 5 HOH B 33 733 205 HOH HOH . Q 5 HOH B 34 734 79 HOH HOH . Q 5 HOH B 35 735 97 HOH HOH . Q 5 HOH B 36 736 187 HOH HOH . Q 5 HOH B 37 737 7 HOH HOH . Q 5 HOH B 38 738 60 HOH HOH . Q 5 HOH B 39 739 188 HOH HOH . Q 5 HOH B 40 740 24 HOH HOH . Q 5 HOH B 41 741 186 HOH HOH . Q 5 HOH B 42 742 146 HOH HOH . Q 5 HOH B 43 743 109 HOH HOH . Q 5 HOH B 44 744 23 HOH HOH . Q 5 HOH B 45 745 178 HOH HOH . Q 5 HOH B 46 746 75 HOH HOH . Q 5 HOH B 47 747 16 HOH HOH . Q 5 HOH B 48 748 112 HOH HOH . Q 5 HOH B 49 749 147 HOH HOH . Q 5 HOH B 50 750 37 HOH HOH . Q 5 HOH B 51 751 189 HOH HOH . Q 5 HOH B 52 752 144 HOH HOH . Q 5 HOH B 53 753 145 HOH HOH . Q 5 HOH B 54 754 155 HOH HOH . Q 5 HOH B 55 755 85 HOH HOH . Q 5 HOH B 56 756 93 HOH HOH . Q 5 HOH B 57 757 3 HOH HOH . Q 5 HOH B 58 758 133 HOH HOH . Q 5 HOH B 59 759 4 HOH HOH . Q 5 HOH B 60 760 9 HOH HOH . Q 5 HOH B 61 761 114 HOH HOH . Q 5 HOH B 62 762 33 HOH HOH . Q 5 HOH B 63 763 157 HOH HOH . Q 5 HOH B 64 764 47 HOH HOH . Q 5 HOH B 65 765 183 HOH HOH . Q 5 HOH B 66 766 30 HOH HOH . Q 5 HOH B 67 767 39 HOH HOH . Q 5 HOH B 68 768 32 HOH HOH . Q 5 HOH B 69 769 61 HOH HOH . Q 5 HOH B 70 770 92 HOH HOH . Q 5 HOH B 71 771 134 HOH HOH . Q 5 HOH B 72 772 22 HOH HOH . Q 5 HOH B 73 773 100 HOH HOH . Q 5 HOH B 74 774 78 HOH HOH . Q 5 HOH B 75 775 84 HOH HOH . Q 5 HOH B 76 776 73 HOH HOH . Q 5 HOH B 77 777 113 HOH HOH . Q 5 HOH B 78 778 63 HOH HOH . Q 5 HOH B 79 779 87 HOH HOH . Q 5 HOH B 80 780 48 HOH HOH . Q 5 HOH B 81 781 140 HOH HOH . Q 5 HOH B 82 782 68 HOH HOH . Q 5 HOH B 83 783 76 HOH HOH . Q 5 HOH B 84 784 104 HOH HOH . Q 5 HOH B 85 785 168 HOH HOH . Q 5 HOH B 86 786 192 HOH HOH . Q 5 HOH B 87 787 158 HOH HOH . Q 5 HOH B 88 788 198 HOH HOH . Q 5 HOH B 89 789 89 HOH HOH . Q 5 HOH B 90 790 135 HOH HOH . Q 5 HOH B 91 791 129 HOH HOH . R 5 HOH A 1 701 90 HOH HOH . R 5 HOH A 2 702 50 HOH HOH . R 5 HOH A 3 703 173 HOH HOH . R 5 HOH A 4 704 10 HOH HOH . R 5 HOH A 5 705 95 HOH HOH . R 5 HOH A 6 706 117 HOH HOH . R 5 HOH A 7 707 69 HOH HOH . R 5 HOH A 8 708 44 HOH HOH . R 5 HOH A 9 709 26 HOH HOH . R 5 HOH A 10 710 156 HOH HOH . R 5 HOH A 11 711 152 HOH HOH . R 5 HOH A 12 712 127 HOH HOH . R 5 HOH A 13 713 13 HOH HOH . R 5 HOH A 14 714 38 HOH HOH . R 5 HOH A 15 715 125 HOH HOH . R 5 HOH A 16 716 96 HOH HOH . R 5 HOH A 17 717 110 HOH HOH . R 5 HOH A 18 718 65 HOH HOH . R 5 HOH A 19 719 203 HOH HOH . R 5 HOH A 20 720 165 HOH HOH . R 5 HOH A 21 721 88 HOH HOH . R 5 HOH A 22 722 21 HOH HOH . R 5 HOH A 23 723 204 HOH HOH . R 5 HOH A 24 724 81 HOH HOH . R 5 HOH A 25 725 175 HOH HOH . R 5 HOH A 26 726 160 HOH HOH . R 5 HOH A 27 727 179 HOH HOH . R 5 HOH A 28 728 12 HOH HOH . R 5 HOH A 29 729 29 HOH HOH . R 5 HOH A 30 730 15 HOH HOH . R 5 HOH A 31 731 20 HOH HOH . R 5 HOH A 32 732 83 HOH HOH . R 5 HOH A 33 733 142 HOH HOH . R 5 HOH A 34 734 122 HOH HOH . R 5 HOH A 35 735 19 HOH HOH . R 5 HOH A 36 736 72 HOH HOH . R 5 HOH A 37 737 119 HOH HOH . R 5 HOH A 38 738 74 HOH HOH . R 5 HOH A 39 739 25 HOH HOH . R 5 HOH A 40 740 91 HOH HOH . R 5 HOH A 41 741 53 HOH HOH . R 5 HOH A 42 742 170 HOH HOH . R 5 HOH A 43 743 82 HOH HOH . R 5 HOH A 44 744 11 HOH HOH . R 5 HOH A 45 745 80 HOH HOH . R 5 HOH A 46 746 167 HOH HOH . R 5 HOH A 47 747 130 HOH HOH . R 5 HOH A 48 748 86 HOH HOH . R 5 HOH A 49 749 70 HOH HOH . R 5 HOH A 50 750 62 HOH HOH . R 5 HOH A 51 751 171 HOH HOH . R 5 HOH A 52 752 141 HOH HOH . R 5 HOH A 53 753 131 HOH HOH . R 5 HOH A 54 754 118 HOH HOH . R 5 HOH A 55 755 57 HOH HOH . R 5 HOH A 56 756 137 HOH HOH . R 5 HOH A 57 757 169 HOH HOH . R 5 HOH A 58 758 99 HOH HOH . R 5 HOH A 59 759 43 HOH HOH . R 5 HOH A 60 760 51 HOH HOH . R 5 HOH A 61 761 201 HOH HOH . R 5 HOH A 62 762 202 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -44.806 _atom_site.Cartn_y -16.314 _atom_site.Cartn_z 4.729 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 604 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #