data_9N3N # _model_server_result.job_id J4qGQ5-MKcVGOSyIfiNy9g _model_server_result.datetime_utc '2025-07-06 06:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9n3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 9N3N # _exptl.entry_id 9N3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.542 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6-amino-5-cyclopropylpyridin-3-yl)-2-[(2R,5S)-2-(1,3-benzothiazol-5-yl)-5-methylpiperidin-1-yl]-2-oxoacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9N3N _cell.length_a 102.49 _cell.length_b 136.41 _cell.length_c 178.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9N3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -136.41 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -136.41 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H25 N5 O2 S' _chem_comp.formula_weight 435.542 _chem_comp.id A1BV5 _chem_comp.mon_nstd_flag . _chem_comp.name N-(6-amino-5-cyclopropylpyridin-3-yl)-2-[(2R,5S)-2-(1,3-benzothiazol-5-yl)-5-methylpiperidin-1-yl]-2-oxoacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1BV5 sing 1 n n C2 C3 A1BV5 sing 2 n n C2 C6 A1BV5 sing 3 n n C3 C4 A1BV5 sing 4 n n C4 C5 A1BV5 sing 5 n n C5 N1 A1BV5 sing 6 n n C5 C17 A1BV5 sing 7 n n N1 C6 A1BV5 sing 8 n n N1 C7 A1BV5 sing 9 n n C7 O1 A1BV5 doub 10 n n C7 C8 A1BV5 sing 11 n n C8 O2 A1BV5 doub 12 n n C8 N2 A1BV5 sing 13 n n N2 C9 A1BV5 sing 14 n n C9 C10 A1BV5 doub 15 n y C9 C13 A1BV5 sing 16 n y C10 N3 A1BV5 sing 17 n y N3 C11 A1BV5 doub 18 n y C11 N4 A1BV5 sing 19 n n C11 C12 A1BV5 sing 20 n y C12 C13 A1BV5 doub 21 n y C12 C14 A1BV5 sing 22 n n C14 C15 A1BV5 sing 23 n n C14 C16 A1BV5 sing 24 n n C15 C16 A1BV5 sing 25 n n C17 C18 A1BV5 sing 26 n y C17 C23 A1BV5 doub 27 n y C18 C19 A1BV5 doub 28 n y C19 C20 A1BV5 sing 29 n y C20 S A1BV5 sing 30 n y C20 C22 A1BV5 doub 31 n y S C21 A1BV5 sing 32 n y C21 N5 A1BV5 doub 33 n y N5 C22 A1BV5 sing 34 n y C22 C23 A1BV5 sing 35 n y C4 H7 A1BV5 sing 36 n n C4 H8 A1BV5 sing 37 n n C5 H9 A1BV5 sing 38 n n C6 H11 A1BV5 sing 39 n n C6 H10 A1BV5 sing 40 n n C10 H13 A1BV5 sing 41 n n C13 H16 A1BV5 sing 42 n n C15 H18 A1BV5 sing 43 n n C15 H19 A1BV5 sing 44 n n C21 H24 A1BV5 sing 45 n n C1 H3 A1BV5 sing 46 n n C1 H1 A1BV5 sing 47 n n C1 H2 A1BV5 sing 48 n n C14 H17 A1BV5 sing 49 n n C16 H21 A1BV5 sing 50 n n C16 H20 A1BV5 sing 51 n n C18 H22 A1BV5 sing 52 n n C19 H23 A1BV5 sing 53 n n C2 H4 A1BV5 sing 54 n n C23 H25 A1BV5 sing 55 n n C3 H5 A1BV5 sing 56 n n C3 H6 A1BV5 sing 57 n n N2 H12 A1BV5 sing 58 n n N4 H14 A1BV5 sing 59 n n N4 H15 A1BV5 sing 60 n n # _atom_sites.entry_id 9N3N _atom_sites.fract_transf_matrix[1][1] 0.009757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1 MTA MTA . D 4 A1BV5 A 1 702 1 A1BV5 LIG . E 5 CL A 1 703 1 CL CL . F 5 CL A 1 704 2 CL CL . G 5 CL A 1 705 3 CL CL . H 5 CL A 1 706 4 CL CL . I 6 EDO A 1 707 1 EDO EDO . J 6 EDO A 1 708 2 EDO EDO . K 6 EDO A 1 709 3 EDO EDO . L 6 EDO A 1 710 4 EDO EDO . M 6 EDO A 1 711 5 EDO EDO . N 6 EDO A 1 712 6 EDO EDO . O 6 EDO A 1 713 9 EDO EDO . P 6 EDO A 1 714 10 EDO EDO . Q 6 EDO A 1 715 11 EDO EDO . R 6 EDO A 1 716 12 EDO EDO . S 6 EDO A 1 717 13 EDO EDO . T 6 EDO A 1 718 14 EDO EDO . U 7 PEG A 1 719 2 PEG PEG . V 7 PEG A 1 720 3 PEG PEG . W 8 PGE A 1 721 1 PGE PGE . X 6 EDO B 1 401 7 EDO EDO . Y 6 EDO B 1 402 8 EDO EDO . Z 7 PEG B 1 403 1 PEG PEG . AA 9 HOH A 1 801 12 HOH HOH . AA 9 HOH A 2 802 114 HOH HOH . AA 9 HOH A 3 803 132 HOH HOH . AA 9 HOH A 4 804 34 HOH HOH . AA 9 HOH A 5 805 4 HOH HOH . AA 9 HOH A 6 806 127 HOH HOH . AA 9 HOH A 7 807 17 HOH HOH . AA 9 HOH A 8 808 112 HOH HOH . AA 9 HOH A 9 809 72 HOH HOH . AA 9 HOH A 10 810 89 HOH HOH . AA 9 HOH A 11 811 73 HOH HOH . AA 9 HOH A 12 812 42 HOH HOH . AA 9 HOH A 13 813 61 HOH HOH . AA 9 HOH A 14 814 43 HOH HOH . AA 9 HOH A 15 815 39 HOH HOH . AA 9 HOH A 16 816 48 HOH HOH . AA 9 HOH A 17 817 64 HOH HOH . AA 9 HOH A 18 818 113 HOH HOH . AA 9 HOH A 19 819 134 HOH HOH . AA 9 HOH A 20 820 110 HOH HOH . AA 9 HOH A 21 821 14 HOH HOH . AA 9 HOH A 22 822 135 HOH HOH . AA 9 HOH A 23 823 54 HOH HOH . AA 9 HOH A 24 824 49 HOH HOH . AA 9 HOH A 25 825 9 HOH HOH . AA 9 HOH A 26 826 13 HOH HOH . AA 9 HOH A 27 827 104 HOH HOH . AA 9 HOH A 28 828 62 HOH HOH . AA 9 HOH A 29 829 101 HOH HOH . AA 9 HOH A 30 830 19 HOH HOH . AA 9 HOH A 31 831 1 HOH HOH . AA 9 HOH A 32 832 111 HOH HOH . AA 9 HOH A 33 833 16 HOH HOH . AA 9 HOH A 34 834 115 HOH HOH . AA 9 HOH A 35 835 122 HOH HOH . AA 9 HOH A 36 836 88 HOH HOH . AA 9 HOH A 37 837 21 HOH HOH . AA 9 HOH A 38 838 31 HOH HOH . AA 9 HOH A 39 839 106 HOH HOH . AA 9 HOH A 40 840 36 HOH HOH . AA 9 HOH A 41 841 47 HOH HOH . AA 9 HOH A 42 842 129 HOH HOH . AA 9 HOH A 43 843 95 HOH HOH . AA 9 HOH A 44 844 76 HOH HOH . AA 9 HOH A 45 845 125 HOH HOH . AA 9 HOH A 46 846 100 HOH HOH . AA 9 HOH A 47 847 92 HOH HOH . AA 9 HOH A 48 848 45 HOH HOH . AA 9 HOH A 49 849 102 HOH HOH . AA 9 HOH A 50 850 56 HOH HOH . AA 9 HOH A 51 851 85 HOH HOH . AA 9 HOH A 52 852 109 HOH HOH . AA 9 HOH A 53 853 35 HOH HOH . AA 9 HOH A 54 854 22 HOH HOH . AA 9 HOH A 55 855 68 HOH HOH . AA 9 HOH A 56 856 131 HOH HOH . AA 9 HOH A 57 857 126 HOH HOH . AA 9 HOH A 58 858 99 HOH HOH . AA 9 HOH A 59 859 58 HOH HOH . AA 9 HOH A 60 860 6 HOH HOH . AA 9 HOH A 61 861 107 HOH HOH . AA 9 HOH A 62 862 10 HOH HOH . AA 9 HOH A 63 863 40 HOH HOH . AA 9 HOH A 64 864 60 HOH HOH . AA 9 HOH A 65 865 133 HOH HOH . AA 9 HOH A 66 866 59 HOH HOH . AA 9 HOH A 67 867 67 HOH HOH . AA 9 HOH A 68 868 50 HOH HOH . AA 9 HOH A 69 869 55 HOH HOH . AA 9 HOH A 70 870 20 HOH HOH . AA 9 HOH A 71 871 38 HOH HOH . AA 9 HOH A 72 872 41 HOH HOH . AA 9 HOH A 73 873 91 HOH HOH . AA 9 HOH A 74 874 2 HOH HOH . AA 9 HOH A 75 875 96 HOH HOH . AA 9 HOH A 76 876 71 HOH HOH . AA 9 HOH A 77 877 52 HOH HOH . AA 9 HOH A 78 878 37 HOH HOH . AA 9 HOH A 79 879 77 HOH HOH . AA 9 HOH A 80 880 105 HOH HOH . AA 9 HOH A 81 881 7 HOH HOH . AA 9 HOH A 82 882 15 HOH HOH . AA 9 HOH A 83 883 18 HOH HOH . AA 9 HOH A 84 884 93 HOH HOH . AA 9 HOH A 85 885 8 HOH HOH . AA 9 HOH A 86 886 69 HOH HOH . AA 9 HOH A 87 887 30 HOH HOH . AA 9 HOH A 88 888 82 HOH HOH . AA 9 HOH A 89 889 118 HOH HOH . AA 9 HOH A 90 890 103 HOH HOH . AA 9 HOH A 91 891 81 HOH HOH . AA 9 HOH A 92 892 90 HOH HOH . AA 9 HOH A 93 893 51 HOH HOH . AA 9 HOH A 94 894 11 HOH HOH . AA 9 HOH A 95 895 3 HOH HOH . AA 9 HOH A 96 896 87 HOH HOH . AA 9 HOH A 97 897 32 HOH HOH . AA 9 HOH A 98 898 98 HOH HOH . AA 9 HOH A 99 899 44 HOH HOH . AA 9 HOH A 100 900 24 HOH HOH . AA 9 HOH A 101 901 46 HOH HOH . AA 9 HOH A 102 902 23 HOH HOH . AA 9 HOH A 103 903 63 HOH HOH . AA 9 HOH A 104 904 65 HOH HOH . AA 9 HOH A 105 905 70 HOH HOH . AA 9 HOH A 106 906 57 HOH HOH . AA 9 HOH A 107 907 108 HOH HOH . AA 9 HOH A 108 908 53 HOH HOH . AA 9 HOH A 109 909 94 HOH HOH . BA 9 HOH B 1 501 130 HOH HOH . BA 9 HOH B 2 502 137 HOH HOH . BA 9 HOH B 3 503 136 HOH HOH . BA 9 HOH B 4 504 25 HOH HOH . BA 9 HOH B 5 505 80 HOH HOH . BA 9 HOH B 6 506 128 HOH HOH . BA 9 HOH B 7 507 84 HOH HOH . BA 9 HOH B 8 508 78 HOH HOH . BA 9 HOH B 9 509 27 HOH HOH . BA 9 HOH B 10 510 120 HOH HOH . BA 9 HOH B 11 511 83 HOH HOH . BA 9 HOH B 12 512 66 HOH HOH . BA 9 HOH B 13 513 33 HOH HOH . BA 9 HOH B 14 514 124 HOH HOH . BA 9 HOH B 15 515 74 HOH HOH . BA 9 HOH B 16 516 123 HOH HOH . BA 9 HOH B 17 517 79 HOH HOH . BA 9 HOH B 18 518 75 HOH HOH . BA 9 HOH B 19 519 119 HOH HOH . BA 9 HOH B 20 520 5 HOH HOH . BA 9 HOH B 21 521 97 HOH HOH . BA 9 HOH B 22 522 116 HOH HOH . BA 9 HOH B 23 523 29 HOH HOH . BA 9 HOH B 24 524 26 HOH HOH . BA 9 HOH B 25 525 86 HOH HOH . BA 9 HOH B 26 526 28 HOH HOH . BA 9 HOH B 27 527 117 HOH HOH . BA 9 HOH B 28 528 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1BV5 . . . D 4 21.859 -49.01 -10.558 1 40.01 ? N1 A1BV5 702 A 1 HETATM 2 N N3 A1BV5 . . . D 4 18.795 -43.2 -9.774 1 43.81 ? N3 A1BV5 702 A 1 HETATM 3 C C4 A1BV5 . . . D 4 23.439 -48.748 -8.684 1 44.26 ? C4 A1BV5 702 A 1 HETATM 4 C C5 A1BV5 . . . D 4 21.971 -48.653 -9.131 1 41.84 ? C5 A1BV5 702 A 1 HETATM 5 C C6 A1BV5 . . . D 4 22.527 -50.218 -11.064 1 38.61 ? C6 A1BV5 702 A 1 HETATM 6 C C7 A1BV5 . . . D 4 21.15 -48.237 -11.409 1 42.54 ? C7 A1BV5 702 A 1 HETATM 7 C C8 A1BV5 . . . D 4 20.452 -47.009 -10.921 1 42.29 ? C8 A1BV5 702 A 1 HETATM 8 C C10 A1BV5 . . . D 4 19.255 -44.382 -10.13 1 42.36 ? C10 A1BV5 702 A 1 HETATM 9 C C13 A1BV5 . . . D 4 21.249 -43.379 -10.967 1 41.47 ? C13 A1BV5 702 A 1 HETATM 10 C C15 A1BV5 . . . D 4 23 -41.036 -11.142 1 42.5 ? C15 A1BV5 702 A 1 HETATM 11 C C17 A1BV5 . . . D 4 21.075 -49.524 -8.278 1 50.16 ? C17 A1BV5 702 A 1 HETATM 12 C C20 A1BV5 . . . D 4 19.404 -51.106 -6.73 1 48.69 ? C20 A1BV5 702 A 1 HETATM 13 C C21 A1BV5 . . . D 4 19.91 -51.848 -4.431 1 49.78 ? C21 A1BV5 702 A 1 HETATM 14 C C22 A1BV5 . . . D 4 20.629 -50.673 -6.208 1 51.29 ? C22 A1BV5 702 A 1 HETATM 15 C C1 A1BV5 . . . D 4 24.78 -49.145 -11.361 1 35.38 ? C1 A1BV5 702 A 1 HETATM 16 C C11 A1BV5 . . . D 4 19.487 -42.094 -9.977 1 42.16 ? C11 A1BV5 702 A 1 HETATM 17 C C12 A1BV5 . . . D 4 20.736 -42.152 -10.579 1 36.92 ? C12 A1BV5 702 A 1 HETATM 18 C C14 A1BV5 . . . D 4 21.517 -40.886 -10.803 1 41.78 ? C14 A1BV5 702 A 1 HETATM 19 C C16 A1BV5 . . . D 4 22.58 -40.518 -9.766 1 43.71 ? C16 A1BV5 702 A 1 HETATM 20 C C18 A1BV5 . . . D 4 19.855 -49.953 -8.784 1 48.25 ? C18 A1BV5 702 A 1 HETATM 21 C C19 A1BV5 . . . D 4 19.023 -50.742 -8.02 1 39.09 ? C19 A1BV5 702 A 1 HETATM 22 C C2 A1BV5 . . . D 4 23.995 -50.246 -10.641 1 40.71 ? C2 A1BV5 702 A 1 HETATM 23 C C23 A1BV5 . . . D 4 21.457 -49.867 -7.014 1 46.41 ? C23 A1BV5 702 A 1 HETATM 24 C C3 A1BV5 . . . D 4 24.088 -50.065 -9.125 1 42.31 ? C3 A1BV5 702 A 1 HETATM 25 C C9 A1BV5 . . . D 4 20.492 -44.533 -10.743 1 48.32 ? C9 A1BV5 702 A 1 HETATM 26 N N2 A1BV5 . . . D 4 21.012 -45.787 -11.132 1 52.22 ? N2 A1BV5 702 A 1 HETATM 27 N N4 A1BV5 . . . D 4 18.962 -40.867 -9.582 1 42.02 ? N4 A1BV5 702 A 1 HETATM 28 N N5 A1BV5 . . . D 4 20.824 -51.122 -4.953 1 46.07 ? N5 A1BV5 702 A 1 HETATM 29 O O1 A1BV5 . . . D 4 21.068 -48.552 -12.58 1 38.43 ? O1 A1BV5 702 A 1 HETATM 30 O O2 A1BV5 . . . D 4 19.395 -47.164 -10.342 1 43.63 ? O2 A1BV5 702 A 1 HETATM 31 S S A1BV5 . . . D 4 18.603 -52.081 -5.502 1 45.44 ? S A1BV5 702 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #