data_9N3Q
#
_model_server_result.job_id            MsfhxAhS_O5gmKFqhkCnUA 
_model_server_result.datetime_utc      '2025-04-18 00:53:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9n3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":701}' 
#
_entry.id    9N3Q 
#
_exptl.entry_id    9N3Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9N3Q 
_cell.length_a            97.41 
_cell.length_b            136.45 
_cell.length_c            178.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9N3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 320 n n 
CS HCS1 MTA sing 321 n n 
CS HCS2 MTA sing 322 n n 
CS HCS3 MTA sing 323 n n 
S5' C5' MTA sing 324 n n 
C5' C4' MTA sing 325 n n 
C5' "H5'1" MTA sing 326 n n 
C5' "H5'2" MTA sing 327 n n 
C4' O4' MTA sing 328 n n 
C4' C3' MTA sing 329 n n 
C4' H4' MTA sing 330 n n 
O4' C1' MTA sing 331 n n 
C2' O2' MTA sing 332 n n 
C2' C3' MTA sing 333 n n 
C2' C1' MTA sing 334 n n 
C2' H2' MTA sing 335 n n 
O2' HO2' MTA sing 336 n n 
C3' O3' MTA sing 337 n n 
C3' H3' MTA sing 338 n n 
O3' H3T MTA sing 339 n n 
C1' N9 MTA sing 340 n n 
C1' H1' MTA sing 341 n n 
N9 C8 MTA sing 342 n y 
N9 C4 MTA sing 343 n y 
C8 N7 MTA doub 344 n y 
C8 H8 MTA sing 345 n n 
N7 C5 MTA sing 346 n y 
C5 C6 MTA sing 347 n y 
C5 C4 MTA doub 348 n y 
C6 N6 MTA sing 349 n n 
C6 N1 MTA doub 350 n y 
N6 H61 MTA sing 351 n n 
N6 H62 MTA sing 352 n n 
N1 C2 MTA sing 353 n y 
C2 N3 MTA doub 354 n y 
C2 H2 MTA sing 355 n n 
N3 C4 MTA sing 356 n y 
#
_atom_sites.entry_id                     9N3Q 
_atom_sites.fract_transf_matrix[1][1]    0.010266 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007329 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MTA A 1 701 1 MTA MTA . 
F 4 A1BV2 A 1 702 1 A1BV2 LIG . 
G 3 MTA C 1 701 2 MTA MTA . 
H 4 A1BV2 C 1 702 2 A1BV2 LIG . 
I 5 EDO C 1 703 1 EDO EDO . 
J 6 HOH A 1 801 21 HOH HOH . 
J 6 HOH A 2 802 44 HOH HOH . 
J 6 HOH A 3 803 3 HOH HOH . 
J 6 HOH A 4 804 49 HOH HOH . 
J 6 HOH A 5 805 54 HOH HOH . 
J 6 HOH A 6 806 29 HOH HOH . 
J 6 HOH A 7 807 86 HOH HOH . 
J 6 HOH A 8 808 31 HOH HOH . 
J 6 HOH A 9 809 43 HOH HOH . 
J 6 HOH A 10 810 28 HOH HOH . 
J 6 HOH A 11 811 64 HOH HOH . 
J 6 HOH A 12 812 15 HOH HOH . 
J 6 HOH A 13 813 34 HOH HOH . 
J 6 HOH A 14 814 16 HOH HOH . 
J 6 HOH A 15 815 53 HOH HOH . 
J 6 HOH A 16 816 52 HOH HOH . 
J 6 HOH A 17 817 63 HOH HOH . 
J 6 HOH A 18 818 6 HOH HOH . 
J 6 HOH A 19 819 10 HOH HOH . 
J 6 HOH A 20 820 55 HOH HOH . 
J 6 HOH A 21 821 75 HOH HOH . 
J 6 HOH A 22 822 76 HOH HOH . 
J 6 HOH A 23 823 42 HOH HOH . 
J 6 HOH A 24 824 62 HOH HOH . 
J 6 HOH A 25 825 5 HOH HOH . 
J 6 HOH A 26 826 40 HOH HOH . 
J 6 HOH A 27 827 77 HOH HOH . 
J 6 HOH A 28 828 68 HOH HOH . 
J 6 HOH A 29 829 30 HOH HOH . 
J 6 HOH A 30 830 25 HOH HOH . 
J 6 HOH A 31 831 84 HOH HOH . 
J 6 HOH A 32 832 69 HOH HOH . 
J 6 HOH A 33 833 83 HOH HOH . 
J 6 HOH A 34 834 61 HOH HOH . 
J 6 HOH A 35 835 79 HOH HOH . 
J 6 HOH A 36 836 78 HOH HOH . 
K 6 HOH B 1 401 46 HOH HOH . 
K 6 HOH B 2 402 50 HOH HOH . 
L 6 HOH C 1 801 19 HOH HOH . 
L 6 HOH C 2 802 38 HOH HOH . 
L 6 HOH C 3 803 14 HOH HOH . 
L 6 HOH C 4 804 35 HOH HOH . 
L 6 HOH C 5 805 60 HOH HOH . 
L 6 HOH C 6 806 59 HOH HOH . 
L 6 HOH C 7 807 11 HOH HOH . 
L 6 HOH C 8 808 36 HOH HOH . 
L 6 HOH C 9 809 56 HOH HOH . 
L 6 HOH C 10 810 12 HOH HOH . 
L 6 HOH C 11 811 48 HOH HOH . 
L 6 HOH C 12 812 74 HOH HOH . 
L 6 HOH C 13 813 85 HOH HOH . 
L 6 HOH C 14 814 32 HOH HOH . 
L 6 HOH C 15 815 47 HOH HOH . 
L 6 HOH C 16 816 45 HOH HOH . 
L 6 HOH C 17 817 9 HOH HOH . 
L 6 HOH C 18 818 18 HOH HOH . 
L 6 HOH C 19 819 37 HOH HOH . 
L 6 HOH C 20 820 26 HOH HOH . 
L 6 HOH C 21 821 1 HOH HOH . 
L 6 HOH C 22 822 13 HOH HOH . 
L 6 HOH C 23 823 4 HOH HOH . 
L 6 HOH C 24 824 51 HOH HOH . 
L 6 HOH C 25 825 70 HOH HOH . 
L 6 HOH C 26 826 8 HOH HOH . 
L 6 HOH C 27 827 17 HOH HOH . 
L 6 HOH C 28 828 58 HOH HOH . 
L 6 HOH C 29 829 7 HOH HOH . 
L 6 HOH C 30 830 24 HOH HOH . 
L 6 HOH C 31 831 39 HOH HOH . 
L 6 HOH C 32 832 2 HOH HOH . 
L 6 HOH C 33 833 80 HOH HOH . 
L 6 HOH C 34 834 33 HOH HOH . 
L 6 HOH C 35 835 27 HOH HOH . 
L 6 HOH C 36 836 22 HOH HOH . 
L 6 HOH C 37 837 72 HOH HOH . 
L 6 HOH C 38 838 23 HOH HOH . 
L 6 HOH C 39 839 66 HOH HOH . 
L 6 HOH C 40 840 71 HOH HOH . 
L 6 HOH C 41 841 65 HOH HOH . 
L 6 HOH C 42 842 73 HOH HOH . 
M 6 HOH D 1 401 20 HOH HOH . 
M 6 HOH D 2 402 57 HOH HOH . 
M 6 HOH D 3 403 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . G 3 19.335 31.624 38.228 1 29.73 ? CS MTA 701 C 1 
HETATM 2 S S5' MTA . . . G 3 18.002 30.413 38.096 1 26.03 ? S5' MTA 701 C 1 
HETATM 3 C C5' MTA . . . G 3 16.58 31.519 38.311 1 24.05 ? C5' MTA 701 C 1 
HETATM 4 C C4' MTA . . . G 3 16.71 32.318 39.597 1 25.11 ? C4' MTA 701 C 1 
HETATM 5 O O4' MTA . . . G 3 15.636 33.254 39.725 1 23.96 ? O4' MTA 701 C 1 
HETATM 6 C C2' MTA . . . G 3 15.202 31.592 41.285 1 23.66 ? C2' MTA 701 C 1 
HETATM 7 O O2' MTA . . . G 3 14.98 31.422 42.651 1 25.11 ? O2' MTA 701 C 1 
HETATM 8 C C3' MTA . . . G 3 16.662 31.44 40.844 1 25.51 ? C3' MTA 701 C 1 
HETATM 9 O O3' MTA . . . G 3 17.532 31.979 41.802 1 23.78 ? O3' MTA 701 C 1 
HETATM 10 C C1' MTA . . . G 3 14.928 33.047 40.907 1 20.51 ? C1' MTA 701 C 1 
HETATM 11 N N9 MTA . . . G 3 13.535 33.345 40.673 1 23.37 ? N9 MTA 701 C 1 
HETATM 12 C C8 MTA . . . G 3 12.652 32.631 39.908 1 24.97 ? C8 MTA 701 C 1 
HETATM 13 N N7 MTA . . . G 3 11.459 33.146 39.88 1 24.85 ? N7 MTA 701 C 1 
HETATM 14 C C5 MTA . . . G 3 11.553 34.264 40.669 1 24.86 ? C5 MTA 701 C 1 
HETATM 15 C C6 MTA . . . G 3 10.622 35.25 41.046 1 24.93 ? C6 MTA 701 C 1 
HETATM 16 N N6 MTA . . . G 3 9.354 35.238 40.635 1 28.81 ? N6 MTA 701 C 1 
HETATM 17 N N1 MTA . . . G 3 11.043 36.236 41.847 1 25.94 ? N1 MTA 701 C 1 
HETATM 18 C C2 MTA . . . G 3 12.31 36.244 42.253 1 28.21 ? C2 MTA 701 C 1 
HETATM 19 N N3 MTA . . . G 3 13.27 35.381 41.971 1 25.45 ? N3 MTA 701 C 1 
HETATM 20 C C4 MTA . . . G 3 12.837 34.408 41.173 1 24.11 ? C4 MTA 701 C 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#