data_9N4Y
#
_model_server_result.job_id            jvS0BhL-H9eWQnXdQ71drg 
_model_server_result.datetime_utc      '2025-09-08 13:58:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9n4y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":501}' 
#
_entry.id    9N4Y 
#
_exptl.entry_id    9N4Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9N4Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9N4Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     9N4Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 2 FAD a 1 501 467 FAD FAD . 
P 2 FAD d 1 501 467 FAD FAD . 
Q 2 FAD g 1 501 467 FAD FAD . 
R 2 FAD j 1 501 467 FAD FAD . 
S 2 FAD m 1 501 467 FAD FAD . 
T 2 FAD p 1 501 467 FAD FAD . 
U 2 FAD s 1 501 467 FAD FAD . 
V 2 FAD v 1 501 467 FAD FAD . 
W 2 FAD y 1 501 467 FAD FAD . 
X 2 FAD b 1 501 467 FAD FAD . 
Y 2 FAD e 1 501 467 FAD FAD . 
Z 2 FAD h 1 501 467 FAD FAD . 
AA 2 FAD k 1 501 467 FAD FAD . 
BA 2 FAD n 1 501 467 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . U 2 269.887 255.865 343.96 1 83.4 ? PA FAD 501 s 1 
HETATM 2 O O1A FAD . . . U 2 270.879 256.937 344.217 1 80.49 ? O1A FAD 501 s 1 
HETATM 3 O O2A FAD . . . U 2 268.482 256.138 344.502 1 88.23 ? O2A FAD 501 s 1 
HETATM 4 O O5B FAD . . . U 2 269.783 255.548 342.42 1 102.76 ? O5B FAD 501 s 1 
HETATM 5 C C5B FAD . . . U 2 268.507 255.304 341.792 1 122.42 ? C5B FAD 501 s 1 
HETATM 6 C C4B FAD . . . U 2 268.355 256.163 340.563 1 122.42 ? C4B FAD 501 s 1 
HETATM 7 O O4B FAD . . . U 2 267.608 255.436 339.559 1 116.08 ? O4B FAD 501 s 1 
HETATM 8 C C3B FAD . . . U 2 267.591 257.465 340.777 1 129.83 ? C3B FAD 501 s 1 
HETATM 9 O O3B FAD . . . U 2 268.037 258.47 339.874 1 148.74 ? O3B FAD 501 s 1 
HETATM 10 C C2B FAD . . . U 2 266.152 257.05 340.472 1 117.59 ? C2B FAD 501 s 1 
HETATM 11 O O2B FAD . . . U 2 265.35 258.153 340.067 1 114.43 ? O2B FAD 501 s 1 
HETATM 12 C C1B FAD . . . U 2 266.376 256.088 339.307 1 120.38 ? C1B FAD 501 s 1 
HETATM 13 N N9A FAD . . . U 2 265.333 255.076 339.16 1 139.11 ? N9A FAD 501 s 1 
HETATM 14 C C8A FAD . . . U 2 264.413 254.697 340.101 1 157.03 ? C8A FAD 501 s 1 
HETATM 15 N N7A FAD . . . U 2 263.585 253.765 339.696 1 159.68 ? N7A FAD 501 s 1 
HETATM 16 C C5A FAD . . . U 2 263.986 253.516 338.391 1 148.52 ? C5A FAD 501 s 1 
HETATM 17 C C6A FAD . . . U 2 263.512 252.63 337.405 1 131.45 ? C6A FAD 501 s 1 
HETATM 18 N N6A FAD . . . U 2 262.485 251.795 337.587 1 117.07 ? N6A FAD 501 s 1 
HETATM 19 N N1A FAD . . . U 2 264.138 252.632 336.207 1 129.46 ? N1A FAD 501 s 1 
HETATM 20 C C2A FAD . . . U 2 265.165 253.464 336.019 1 120.1 ? C2A FAD 501 s 1 
HETATM 21 N N3A FAD . . . U 2 265.699 254.341 336.872 1 122.45 ? N3A FAD 501 s 1 
HETATM 22 C C4A FAD . . . U 2 265.061 254.318 338.048 1 141.94 ? C4A FAD 501 s 1 
HETATM 23 N N1 FAD . . . U 2 273.95 258.018 352.253 1 81.5 ? N1 FAD 501 s 1 
HETATM 24 C C2 FAD . . . U 2 275.242 258.171 352.665 1 84.68 ? C2 FAD 501 s 1 
HETATM 25 O O2 FAD . . . U 2 276.105 257.318 352.431 1 102.09 ? O2 FAD 501 s 1 
HETATM 26 N N3 FAD . . . U 2 275.61 259.303 353.364 1 74.91 ? N3 FAD 501 s 1 
HETATM 27 C C4 FAD . . . U 2 274.786 260.346 353.709 1 66.14 ? C4 FAD 501 s 1 
HETATM 28 O O4 FAD . . . U 2 275.235 261.302 354.336 1 62.71 ? O4 FAD 501 s 1 
HETATM 29 C C4X FAD . . . U 2 273.414 260.179 353.269 1 71.73 ? C4X FAD 501 s 1 
HETATM 30 N N5 FAD . . . U 2 272.559 261.123 353.552 1 73.92 ? N5 FAD 501 s 1 
HETATM 31 C C5X FAD . . . U 2 271.249 260.961 353.13 1 75.98 ? C5X FAD 501 s 1 
HETATM 32 C C6 FAD . . . U 2 270.321 261.959 353.424 1 82.09 ? C6 FAD 501 s 1 
HETATM 33 C C7 FAD . . . U 2 268.994 261.843 353.022 1 91.85 ? C7 FAD 501 s 1 
HETATM 34 C C7M FAD . . . U 2 268.02 262.941 353.357 1 97.47 ? C7M FAD 501 s 1 
HETATM 35 C C8 FAD . . . U 2 268.582 260.705 352.309 1 86.49 ? C8 FAD 501 s 1 
HETATM 36 C C8M FAD . . . U 2 267.153 260.548 351.859 1 88.5 ? C8M FAD 501 s 1 
HETATM 37 C C9 FAD . . . U 2 269.506 259.707 352.015 1 79.48 ? C9 FAD 501 s 1 
HETATM 38 C C9A FAD . . . U 2 270.83 259.827 352.418 1 78.21 ? C9A FAD 501 s 1 
HETATM 39 N N10 FAD . . . U 2 271.789 258.836 352.131 1 82.37 ? N10 FAD 501 s 1 
HETATM 40 C C10 FAD . . . U 2 273.091 258.978 352.545 1 78.65 ? C10 FAD 501 s 1 
HETATM 41 C C1' FAD . . . U 2 271.415 257.622 351.394 1 86.65 ? C1' FAD 501 s 1 
HETATM 42 C C2' FAD . . . U 2 271.598 257.752 349.886 1 88.28 ? C2' FAD 501 s 1 
HETATM 43 O O2' FAD . . . U 2 270.517 258.49 349.317 1 89.87 ? O2' FAD 501 s 1 
HETATM 44 C C3' FAD . . . U 2 271.636 256.356 349.265 1 87.74 ? C3' FAD 501 s 1 
HETATM 45 O O3' FAD . . . U 2 272.676 255.606 349.883 1 78.3 ? O3' FAD 501 s 1 
HETATM 46 C C4' FAD . . . U 2 271.85 256.344 347.751 1 86.59 ? C4' FAD 501 s 1 
HETATM 47 O O4' FAD . . . U 2 270.973 257.293 347.143 1 77.99 ? O4' FAD 501 s 1 
HETATM 48 C C5' FAD . . . U 2 271.641 254.971 347.148 1 95.93 ? C5' FAD 501 s 1 
HETATM 49 O O5' FAD . . . U 2 272.425 254.861 345.942 1 91.72 ? O5' FAD 501 s 1 
HETATM 50 P P FAD . . . U 2 271.9 254.051 344.698 1 84.81 ? P FAD 501 s 1 
HETATM 51 O O1P FAD . . . U 2 272.612 254.509 343.422 1 75.77 ? O1P FAD 501 s 1 
HETATM 52 O O2P FAD . . . U 2 271.977 252.595 344.962 1 76.78 ? O2P FAD 501 s 1 
HETATM 53 O O3P FAD . . . U 2 270.385 254.502 344.597 1 83.68 ? O3P FAD 501 s 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#