data_9N55
#
_model_server_result.job_id            -JJullqWWlxNsOqV7lBULg 
_model_server_result.datetime_utc      '2025-07-08 01:19:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9n55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    9N55 
#
_exptl.entry_id    9N55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.229 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OCTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9N55 
_cell.length_a            35.85 
_cell.length_b            64.23 
_cell.length_c            73.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 9N55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C8 H18' 
_chem_comp.formula_weight    114.229 
_chem_comp.id                OCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCT sing 224 n n 
C1 H11 OCT sing 225 n n 
C1 H12 OCT sing 226 n n 
C1 H13 OCT sing 227 n n 
C2 C3 OCT sing 228 n n 
C2 H21 OCT sing 229 n n 
C2 H22 OCT sing 230 n n 
C3 C4 OCT sing 231 n n 
C3 H31 OCT sing 232 n n 
C3 H32 OCT sing 233 n n 
C4 C5 OCT sing 234 n n 
C4 H41 OCT sing 235 n n 
C4 H42 OCT sing 236 n n 
C5 C6 OCT sing 237 n n 
C5 H51 OCT sing 238 n n 
C5 H52 OCT sing 239 n n 
C6 C7 OCT sing 240 n n 
C6 H61 OCT sing 241 n n 
C6 H62 OCT sing 242 n n 
C7 C8 OCT sing 243 n n 
C7 H71 OCT sing 244 n n 
C7 H72 OCT sing 245 n n 
C8 H81 OCT sing 246 n n 
C8 H82 OCT sing 247 n n 
C8 H83 OCT sing 248 n n 
#
_atom_sites.entry_id                     9N55 
_atom_sites.fract_transf_matrix[1][1]    0.027894 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OCT A 1 101 102 OCT LIG . 
D 3 HOH A 1 201 38 HOH HOH . 
D 3 HOH A 2 202 28 HOH HOH . 
D 3 HOH A 3 203 8 HOH HOH . 
D 3 HOH A 4 204 169 HOH HOH . 
D 3 HOH A 5 205 3 HOH HOH . 
D 3 HOH A 6 206 4 HOH HOH . 
D 3 HOH A 7 207 31 HOH HOH . 
D 3 HOH A 8 208 12 HOH HOH . 
D 3 HOH A 9 209 27 HOH HOH . 
D 3 HOH A 10 210 24 HOH HOH . 
D 3 HOH A 11 211 5 HOH HOH . 
D 3 HOH A 12 212 6 HOH HOH . 
D 3 HOH A 13 213 1 HOH HOH . 
D 3 HOH A 14 214 54 HOH HOH . 
D 3 HOH A 15 215 112 HOH HOH . 
D 3 HOH A 16 216 10 HOH HOH . 
D 3 HOH A 17 217 41 HOH HOH . 
D 3 HOH A 18 218 2 HOH HOH . 
D 3 HOH A 19 219 20 HOH HOH . 
D 3 HOH A 20 220 40 HOH HOH . 
D 3 HOH A 21 221 27 HOH HOH . 
D 3 HOH A 22 222 32 HOH HOH . 
D 3 HOH A 23 223 102 HOH HOH . 
D 3 HOH A 24 224 36 HOH HOH . 
D 3 HOH A 25 225 53 HOH HOH . 
D 3 HOH A 26 226 39 HOH HOH . 
D 3 HOH A 27 227 131 HOH HOH . 
D 3 HOH A 28 228 47 HOH HOH . 
D 3 HOH A 29 229 136 HOH HOH . 
D 3 HOH A 30 230 121 HOH HOH . 
D 3 HOH A 31 231 28 HOH HOH . 
D 3 HOH A 32 232 43 HOH HOH . 
D 3 HOH A 33 233 30 HOH HOH . 
D 3 HOH A 34 234 42 HOH HOH . 
D 3 HOH A 35 235 26 HOH HOH . 
D 3 HOH A 36 236 173 HOH HOH . 
D 3 HOH A 37 237 29 HOH HOH . 
D 3 HOH A 38 238 33 HOH HOH . 
D 3 HOH A 39 239 37 HOH HOH . 
D 3 HOH A 40 240 46 HOH HOH . 
D 3 HOH A 41 241 34 HOH HOH . 
D 3 HOH A 42 242 35 HOH HOH . 
E 3 HOH B 1 101 40 HOH HOH . 
E 3 HOH B 2 102 44 HOH HOH . 
E 3 HOH B 3 103 37 HOH HOH . 
E 3 HOH B 4 104 17 HOH HOH . 
E 3 HOH B 5 105 47 HOH HOH . 
E 3 HOH B 6 106 9 HOH HOH . 
E 3 HOH B 7 107 90 HOH HOH . 
E 3 HOH B 8 108 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCT . . . C 2 8.223 2.421 -6.983 1 39.74 ? C1 OCT 101 A 1 
HETATM 2 C C2 OCT . . . C 2 8.51 1.78 -5.647 1 46.07 ? C2 OCT 101 A 1 
HETATM 3 C C3 OCT . . . C 2 8.745 0.281 -5.703 1 49.74 ? C3 OCT 101 A 1 
HETATM 4 C C4 OCT . . . C 2 8.845 -0.392 -4.338 1 42.87 ? C4 OCT 101 A 1 
HETATM 5 C C5 OCT . . . C 2 9.248 -1.861 -4.36 1 50.8 ? C5 OCT 101 A 1 
HETATM 6 C C6 OCT . . . C 2 8.768 -2.657 -3.152 1 47.72 ? C6 OCT 101 A 1 
HETATM 7 C C7 OCT . . . C 2 9.741 -3.704 -2.637 1 53.75 ? C7 OCT 101 A 1 
HETATM 8 C C8 OCT . . . C 2 9.159 -4.641 -1.607 1 57.62 ? C8 OCT 101 A 1 
HETATM 9 H H11 OCT . . . C 2 8.962 2.243 -7.596 1 47.78 ? H11 OCT 101 A 1 
HETATM 10 H H12 OCT . . . C 2 8.122 3.385 -6.868 1 47.78 ? H12 OCT 101 A 1 
HETATM 11 H H13 OCT . . . C 2 7.399 2.051 -7.353 1 47.78 ? H13 OCT 101 A 1 
HETATM 12 H H21 OCT . . . C 2 7.754 1.954 -5.046 1 55.36 ? H21 OCT 101 A 1 
HETATM 13 H H22 OCT . . . C 2 9.305 2.205 -5.259 1 55.36 ? H22 OCT 101 A 1 
HETATM 14 H H31 OCT . . . C 2 9.575 0.112 -6.199 1 59.77 ? H31 OCT 101 A 1 
HETATM 15 H H32 OCT . . . C 2 8.009 -0.133 -6.205 1 59.77 ? H32 OCT 101 A 1 
HETATM 16 H H41 OCT . . . C 2 7.974 -0.317 -3.89 1 51.53 ? H41 OCT 101 A 1 
HETATM 17 H H42 OCT . . . C 2 9.5 0.1 -3.797 1 51.53 ? H42 OCT 101 A 1 
HETATM 18 H H51 OCT . . . C 2 10.227 -1.919 -4.407 1 61.05 ? H51 OCT 101 A 1 
HETATM 19 H H52 OCT . . . C 2 8.887 -2.275 -5.174 1 61.05 ? H52 OCT 101 A 1 
HETATM 20 H H61 OCT . . . C 2 7.927 -3.106 -3.388 1 57.35 ? H61 OCT 101 A 1 
HETATM 21 H H62 OCT . . . C 2 8.574 -2.03 -2.422 1 57.35 ? H62 OCT 101 A 1 
HETATM 22 H H71 OCT . . . C 2 10.514 -3.245 -2.245 1 64.59 ? H71 OCT 101 A 1 
HETATM 23 H H72 OCT . . . C 2 10.062 -4.233 -3.399 1 64.59 ? H72 OCT 101 A 1 
HETATM 24 H H81 OCT . . . C 2 8.418 -5.14 -2.001 1 69.23 ? H81 OCT 101 A 1 
HETATM 25 H H82 OCT . . . C 2 8.834 -4.127 -0.844 1 69.23 ? H82 OCT 101 A 1 
HETATM 26 H H83 OCT . . . C 2 9.847 -5.265 -1.308 1 69.23 ? H83 OCT 101 A 1 
#
_model_server_stats.io_time_ms              118 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#