data_9NB7 # _model_server_result.job_id RUIBFeL7UFrFaqKVflJitg _model_server_result.datetime_utc '2025-06-28 06:19:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9NB7 # _exptl.entry_id 9NB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R)-4-({(2S)-1-[(5-acetamidopentyl)amino]-1-oxo-3-phenylpropan-2-yl}amino)-3-hydroxy-4-oxobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NB7 _cell.length_a 42.5 _cell.length_b 48.9 _cell.length_c 101.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C2 A1BWT . A A1BWT 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? # _chem_comp.formula 'C20 H29 N3 O6' _chem_comp.formula_weight 407.461 _chem_comp.id A1BWT _chem_comp.mon_nstd_flag . _chem_comp.name '(3R)-4-({(2S)-1-[(5-acetamidopentyl)amino]-1-oxo-3-phenylpropan-2-yl}amino)-3-hydroxy-4-oxobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 A1BWT doub 1 n n C1 O1 A1BWT sing 2 n n C1 C2 A1BWT sing 3 n n C2 C3 A1BWT sing 4 n n O3 C3 A1BWT sing 5 n n O4 C4 A1BWT doub 6 n n C3 C4 A1BWT sing 7 n n C4 N1 A1BWT sing 8 n n N1 C5 A1BWT sing 9 n n C5 C13 A1BWT sing 10 n n C5 C7 A1BWT sing 11 n n C21 C20 A1BWT sing 12 n n C13 C14 A1BWT sing 13 n n C10 C11 A1BWT sing 14 n n C10 C9 A1BWT sing 15 n n N3 C20 A1BWT sing 16 n n N3 C12 A1BWT sing 17 n n C11 C12 A1BWT sing 18 n n C15 C14 A1BWT doub 19 n y C15 C16 A1BWT sing 20 n y C8 C9 A1BWT sing 21 n n C8 N2 A1BWT sing 22 n n C20 O6 A1BWT doub 23 n n C14 C19 A1BWT sing 24 n y C7 N2 A1BWT sing 25 n n C7 O5 A1BWT doub 26 n n C16 C17 A1BWT doub 27 n y C19 C18 A1BWT doub 28 n y C17 C18 A1BWT sing 29 n y N1 H1 A1BWT sing 30 n n N3 H2 A1BWT sing 31 n n C5 H3 A1BWT sing 32 n n C8 H4 A1BWT sing 33 n n C8 H5 A1BWT sing 34 n n C10 H6 A1BWT sing 35 n n C10 H7 A1BWT sing 36 n n C13 H8 A1BWT sing 37 n n C13 H9 A1BWT sing 38 n n C15 H10 A1BWT sing 39 n n C17 H11 A1BWT sing 40 n n C21 H12 A1BWT sing 41 n n C21 H13 A1BWT sing 42 n n C21 H14 A1BWT sing 43 n n C11 H15 A1BWT sing 44 n n C11 H16 A1BWT sing 45 n n C12 H17 A1BWT sing 46 n n C12 H18 A1BWT sing 47 n n C16 H19 A1BWT sing 48 n n C18 H20 A1BWT sing 49 n n C19 H21 A1BWT sing 50 n n C2 H22 A1BWT sing 51 n n C2 H23 A1BWT sing 52 n n C3 H24 A1BWT sing 53 n n C9 H25 A1BWT sing 54 n n C9 H26 A1BWT sing 55 n n N2 H27 A1BWT sing 56 n n O1 H28 A1BWT sing 57 n n O3 H29 A1BWT sing 58 n n # _atom_sites.entry_id 9NB7 _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BWT A 1 301 301 A1BWT LIG . C 3 HOH A 1 401 74 HOH HOH . C 3 HOH A 2 402 42 HOH HOH . C 3 HOH A 3 403 59 HOH HOH . C 3 HOH A 4 404 64 HOH HOH . C 3 HOH A 5 405 43 HOH HOH . C 3 HOH A 6 406 78 HOH HOH . C 3 HOH A 7 407 30 HOH HOH . C 3 HOH A 8 408 73 HOH HOH . C 3 HOH A 9 409 86 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 27 HOH HOH . C 3 HOH A 12 412 56 HOH HOH . C 3 HOH A 13 413 83 HOH HOH . C 3 HOH A 14 414 77 HOH HOH . C 3 HOH A 15 415 23 HOH HOH . C 3 HOH A 16 416 68 HOH HOH . C 3 HOH A 17 417 5 HOH HOH . C 3 HOH A 18 418 60 HOH HOH . C 3 HOH A 19 419 16 HOH HOH . C 3 HOH A 20 420 4 HOH HOH . C 3 HOH A 21 421 6 HOH HOH . C 3 HOH A 22 422 55 HOH HOH . C 3 HOH A 23 423 29 HOH HOH . C 3 HOH A 24 424 28 HOH HOH . C 3 HOH A 25 425 22 HOH HOH . C 3 HOH A 26 426 39 HOH HOH . C 3 HOH A 27 427 67 HOH HOH . C 3 HOH A 28 428 50 HOH HOH . C 3 HOH A 29 429 21 HOH HOH . C 3 HOH A 30 430 71 HOH HOH . C 3 HOH A 31 431 11 HOH HOH . C 3 HOH A 32 432 53 HOH HOH . C 3 HOH A 33 433 70 HOH HOH . C 3 HOH A 34 434 32 HOH HOH . C 3 HOH A 35 435 48 HOH HOH . C 3 HOH A 36 436 79 HOH HOH . C 3 HOH A 37 437 51 HOH HOH . C 3 HOH A 38 438 80 HOH HOH . C 3 HOH A 39 439 13 HOH HOH . C 3 HOH A 40 440 52 HOH HOH . C 3 HOH A 41 441 63 HOH HOH . C 3 HOH A 42 442 19 HOH HOH . C 3 HOH A 43 443 8 HOH HOH . C 3 HOH A 44 444 37 HOH HOH . C 3 HOH A 45 445 33 HOH HOH . C 3 HOH A 46 446 2 HOH HOH . C 3 HOH A 47 447 54 HOH HOH . C 3 HOH A 48 448 7 HOH HOH . C 3 HOH A 49 449 72 HOH HOH . C 3 HOH A 50 450 62 HOH HOH . C 3 HOH A 51 451 57 HOH HOH . C 3 HOH A 52 452 47 HOH HOH . C 3 HOH A 53 453 84 HOH HOH . C 3 HOH A 54 454 38 HOH HOH . C 3 HOH A 55 455 66 HOH HOH . C 3 HOH A 56 456 25 HOH HOH . C 3 HOH A 57 457 20 HOH HOH . C 3 HOH A 58 458 34 HOH HOH . C 3 HOH A 59 459 75 HOH HOH . C 3 HOH A 60 460 15 HOH HOH . C 3 HOH A 61 461 26 HOH HOH . C 3 HOH A 62 462 41 HOH HOH . C 3 HOH A 63 463 81 HOH HOH . C 3 HOH A 64 464 31 HOH HOH . C 3 HOH A 65 465 61 HOH HOH . C 3 HOH A 66 466 40 HOH HOH . C 3 HOH A 67 467 58 HOH HOH . C 3 HOH A 68 468 3 HOH HOH . C 3 HOH A 69 469 18 HOH HOH . C 3 HOH A 70 470 24 HOH HOH . C 3 HOH A 71 471 69 HOH HOH . C 3 HOH A 72 472 45 HOH HOH . C 3 HOH A 73 473 76 HOH HOH . C 3 HOH A 74 474 85 HOH HOH . C 3 HOH A 75 475 17 HOH HOH . C 3 HOH A 76 476 44 HOH HOH . C 3 HOH A 77 477 36 HOH HOH . C 3 HOH A 78 478 49 HOH HOH . C 3 HOH A 79 479 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1BWT . . . B 2 1.464 11.97 19.863 0.64 41.4 ? N1 A1BWT 301 A 1 HETATM 2 N N3 A1BWT . . . B 2 -4.969 14.372 21.289 0.64 55.67 ? N3 A1BWT 301 A 1 HETATM 3 C C4 A1BWT . . . B 2 1.053 12.186 18.607 0.64 37.68 ? C4 A1BWT 301 A 1 HETATM 4 C C5 A1BWT . . . B 2 1.067 10.824 20.66 0.64 45.23 ? C5 A1BWT 301 A 1 HETATM 5 C C7 A1BWT . . . B 2 0.556 11.343 22.003 0.64 39.98 ? C7 A1BWT 301 A 1 HETATM 6 C C8 A1BWT . . . B 2 -1.668 10.207 21.652 0.64 43.33 ? C8 A1BWT 301 A 1 HETATM 7 C C10 A1BWT . . . B 2 -3.232 12.048 20.823 0.64 46.96 ? C10 A1BWT 301 A 1 HETATM 8 C C13 A1BWT . . . B 2 2.266 9.878 20.818 0.64 38.49 ? C13 A1BWT 301 A 1 HETATM 9 C C15 A1BWT . . . B 2 1.409 7.629 21.569 0.64 41.81 ? C15 A1BWT 301 A 1 HETATM 10 C C17 A1BWT . . . B 2 1.761 6.827 23.797 0.64 43.06 ? C17 A1BWT 301 A 1 HETATM 11 C C20 A1BWT . . . B 2 -6.045 15.067 21.659 0.64 57.37 ? C20 A1BWT 301 A 1 HETATM 12 C C21 A1BWT . . . B 2 -7.203 15.079 20.688 0.64 46.3 ? C21 A1BWT 301 A 1 HETATM 13 C C1 A1BWT . . . B 2 3.023 14.138 15.971 0.64 33.21 ? C1 A1BWT 301 A 1 HETATM 14 C C11 A1BWT . . . B 2 -2.702 13.374 21.361 0.64 47.76 ? C11 A1BWT 301 A 1 HETATM 15 C C12 A1BWT . . . B 2 -3.766 14.189 22.092 0.64 51.6 ? C12 A1BWT 301 A 1 HETATM 16 C C14 A1BWT . . . B 2 2.084 8.808 21.864 0.64 44.14 ? C14 A1BWT 301 A 1 HETATM 17 C C16 A1BWT . . . B 2 1.246 6.647 22.534 0.64 41.25 ? C16 A1BWT 301 A 1 HETATM 18 C C18 A1BWT . . . B 2 2.438 7.984 24.104 0.64 42.48 ? C18 A1BWT 301 A 1 HETATM 19 C C19 A1BWT . . . B 2 2.6 8.972 23.145 0.64 42.34 ? C19 A1BWT 301 A 1 HETATM 20 C C2 A1BWT . . . B 2 2.539 13.069 16.898 0.64 35.04 ? C2 A1BWT 301 A 1 HETATM 21 C C3 A1BWT . . . B 2 1.552 13.487 17.974 0.64 36.3 ? C3 A1BWT 301 A 1 HETATM 22 C C9 A1BWT . . . B 2 -3.065 10.811 21.698 0.64 39.47 ? C9 A1BWT 301 A 1 HETATM 23 N N2 A1BWT . . . B 2 -0.689 11.015 22.363 0.64 54.45 ? N2 A1BWT 301 A 1 HETATM 24 O O1 A1BWT . . . B 2 3.808 15.023 16.372 0.64 39.53 -1 O1 A1BWT 301 A 1 HETATM 25 O O2 A1BWT . . . B 2 2.622 14.054 14.8 0.64 31.58 ? O2 A1BWT 301 A 1 HETATM 26 O O3 A1BWT . . . B 2 0.508 14.303 17.468 0.64 40.76 ? O3 A1BWT 301 A 1 HETATM 27 O O4 A1BWT . . . B 2 0.375 11.377 17.967 0.64 29.2 ? O4 A1BWT 301 A 1 HETATM 28 O O5 A1BWT . . . B 2 1.288 12.032 22.717 0.64 53.17 ? O5 A1BWT 301 A 1 HETATM 29 O O6 A1BWT . . . B 2 -6.093 15.675 22.739 0.64 57.08 ? O6 A1BWT 301 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #