data_9NBF # _model_server_result.job_id -H3Qz7u1dfIJcN9ZfYlj9g _model_server_result.datetime_utc '2025-06-29 07:00:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9NBF # _exptl.entry_id 9NBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NBF _cell.length_a 42.5 _cell.length_b 48.9 _cell.length_c 101.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C2 E64 . A E64 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? # _chem_comp.formula 'C15 H30 N5 O5 1' _chem_comp.formula_weight 360.429 _chem_comp.id E64 _chem_comp.mon_nstd_flag . _chem_comp.name N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 E64 doub 83 n n C1 O2 E64 sing 84 n n C1 C2 E64 sing 85 n n O2 HO2 E64 sing 86 n n C2 C3 E64 sing 87 n n C2 H21 E64 sing 88 n n C2 H22 E64 sing 89 n n C3 O3 E64 sing 90 n n C3 C4 E64 sing 91 n n C3 H3 E64 sing 92 n n O3 HO3 E64 sing 93 n n C4 O4 E64 doub 94 n n C4 N1 E64 sing 95 n n N1 C6 E64 sing 96 n n N1 HN1 E64 sing 97 n n C6 C7 E64 sing 98 n n C6 C11 E64 sing 99 n n C6 H6 E64 sing 100 n n C7 C8 E64 sing 101 n n C7 H71 E64 sing 102 n n C7 H72 E64 sing 103 n n C8 C9 E64 sing 104 n n C8 C10 E64 sing 105 n n C8 H8 E64 sing 106 n n C9 H91 E64 sing 107 n n C9 H92 E64 sing 108 n n C9 H93 E64 sing 109 n n C10 H101 E64 sing 110 n n C10 H102 E64 sing 111 n n C10 H103 E64 sing 112 n n C11 O5 E64 doub 113 n n C11 N2 E64 sing 114 n n N2 C12 E64 sing 115 n n N2 HN2 E64 sing 116 n n C12 C13 E64 sing 117 n n C12 H121 E64 sing 118 n n C12 H122 E64 sing 119 n n C13 C14 E64 sing 120 n n C13 H131 E64 sing 121 n n C13 H132 E64 sing 122 n n C14 C15 E64 sing 123 n n C14 H141 E64 sing 124 n n C14 H142 E64 sing 125 n n C15 N3 E64 sing 126 n n C15 H151 E64 sing 127 n n C15 H152 E64 sing 128 n n N3 C16 E64 sing 129 n n N3 HN3 E64 sing 130 n n C16 N4 E64 sing 131 n n C16 N5 E64 doub 132 n n N4 HN41 E64 sing 133 n n N4 HN42 E64 sing 134 n n N5 HN51 E64 sing 135 n n N5 HN52 E64 sing 136 n n # _atom_sites.entry_id 9NBF _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E64 A 1 301 301 E64 E64 . C 3 HOH A 1 401 88 HOH HOH . C 3 HOH A 2 402 67 HOH HOH . C 3 HOH A 3 403 13 HOH HOH . C 3 HOH A 4 404 28 HOH HOH . C 3 HOH A 5 405 46 HOH HOH . C 3 HOH A 6 406 22 HOH HOH . C 3 HOH A 7 407 26 HOH HOH . C 3 HOH A 8 408 16 HOH HOH . C 3 HOH A 9 409 65 HOH HOH . C 3 HOH A 10 410 37 HOH HOH . C 3 HOH A 11 411 51 HOH HOH . C 3 HOH A 12 412 70 HOH HOH . C 3 HOH A 13 413 30 HOH HOH . C 3 HOH A 14 414 56 HOH HOH . C 3 HOH A 15 415 43 HOH HOH . C 3 HOH A 16 416 35 HOH HOH . C 3 HOH A 17 417 33 HOH HOH . C 3 HOH A 18 418 4 HOH HOH . C 3 HOH A 19 419 66 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 45 HOH HOH . C 3 HOH A 22 422 59 HOH HOH . C 3 HOH A 23 423 32 HOH HOH . C 3 HOH A 24 424 61 HOH HOH . C 3 HOH A 25 425 31 HOH HOH . C 3 HOH A 26 426 9 HOH HOH . C 3 HOH A 27 427 52 HOH HOH . C 3 HOH A 28 428 2 HOH HOH . C 3 HOH A 29 429 87 HOH HOH . C 3 HOH A 30 430 53 HOH HOH . C 3 HOH A 31 431 14 HOH HOH . C 3 HOH A 32 432 89 HOH HOH . C 3 HOH A 33 433 18 HOH HOH . C 3 HOH A 34 434 75 HOH HOH . C 3 HOH A 35 435 5 HOH HOH . C 3 HOH A 36 436 58 HOH HOH . C 3 HOH A 37 437 71 HOH HOH . C 3 HOH A 38 438 57 HOH HOH . C 3 HOH A 39 439 1 HOH HOH . C 3 HOH A 40 440 7 HOH HOH . C 3 HOH A 41 441 82 HOH HOH . C 3 HOH A 42 442 60 HOH HOH . C 3 HOH A 43 443 68 HOH HOH . C 3 HOH A 44 444 12 HOH HOH . C 3 HOH A 45 445 10 HOH HOH . C 3 HOH A 46 446 17 HOH HOH . C 3 HOH A 47 447 80 HOH HOH . C 3 HOH A 48 448 50 HOH HOH . C 3 HOH A 49 449 36 HOH HOH . C 3 HOH A 50 450 42 HOH HOH . C 3 HOH A 51 451 54 HOH HOH . C 3 HOH A 52 452 15 HOH HOH . C 3 HOH A 53 453 76 HOH HOH . C 3 HOH A 54 454 49 HOH HOH . C 3 HOH A 55 455 77 HOH HOH . C 3 HOH A 56 456 34 HOH HOH . C 3 HOH A 57 457 8 HOH HOH . C 3 HOH A 58 458 44 HOH HOH . C 3 HOH A 59 459 29 HOH HOH . C 3 HOH A 60 460 48 HOH HOH . C 3 HOH A 61 461 72 HOH HOH . C 3 HOH A 62 462 85 HOH HOH . C 3 HOH A 63 463 41 HOH HOH . C 3 HOH A 64 464 74 HOH HOH . C 3 HOH A 65 465 91 HOH HOH . C 3 HOH A 66 466 84 HOH HOH . C 3 HOH A 67 467 93 HOH HOH . C 3 HOH A 68 468 23 HOH HOH . C 3 HOH A 69 469 83 HOH HOH . C 3 HOH A 70 470 24 HOH HOH . C 3 HOH A 71 471 79 HOH HOH . C 3 HOH A 72 472 38 HOH HOH . C 3 HOH A 73 473 78 HOH HOH . C 3 HOH A 74 474 25 HOH HOH . C 3 HOH A 75 475 39 HOH HOH . C 3 HOH A 76 476 90 HOH HOH . C 3 HOH A 77 477 73 HOH HOH . C 3 HOH A 78 478 69 HOH HOH . C 3 HOH A 79 479 55 HOH HOH . C 3 HOH A 80 480 19 HOH HOH . C 3 HOH A 81 481 63 HOH HOH . C 3 HOH A 82 482 64 HOH HOH . C 3 HOH A 83 483 27 HOH HOH . C 3 HOH A 84 484 47 HOH HOH . C 3 HOH A 85 485 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E64 . . . B 2 3.133 14.065 16.045 0.6 29.7 ? C1 E64 301 A 1 HETATM 2 O O1 E64 . . . B 2 2.458 13.981 15.021 0.6 30.47 ? O1 E64 301 A 1 HETATM 3 O O2 E64 . . . B 2 4.151 14.806 16.217 0.6 35.59 ? O2 E64 301 A 1 HETATM 4 C C2 E64 . . . B 2 2.734 13.235 17.258 0.6 34.54 ? C2 E64 301 A 1 HETATM 5 C C3 E64 . . . B 2 1.236 13.349 17.493 0.6 32.04 ? C3 E64 301 A 1 HETATM 6 O O3 E64 . . . B 2 0.95 14.585 18.095 0.6 36.45 ? O3 E64 301 A 1 HETATM 7 C C4 E64 . . . B 2 0.706 12.146 18.276 0.6 33.82 ? C4 E64 301 A 1 HETATM 8 O O4 E64 . . . B 2 0.185 11.216 17.677 0.6 29.41 ? O4 E64 301 A 1 HETATM 9 N N1 E64 . . . B 2 0.854 12.202 19.616 0.6 40.91 ? N1 E64 301 A 1 HETATM 10 C C6 E64 . . . B 2 0.412 11.167 20.538 0.6 41.23 ? C6 E64 301 A 1 HETATM 11 C C7 E64 . . . B 2 1.398 10.953 21.668 0.6 30.08 ? C7 E64 301 A 1 HETATM 12 C C8 E64 . . . B 2 2.624 10.139 21.276 0.6 35.63 ? C8 E64 301 A 1 HETATM 13 C C9 E64 . . . B 2 2.195 9.003 20.347 0.6 36.93 ? C9 E64 301 A 1 HETATM 14 C C10 E64 . . . B 2 3.309 9.611 22.535 0.6 35.42 ? C10 E64 301 A 1 HETATM 15 C C11 E64 . . . B 2 -0.875 11.614 21.205 0.6 39.86 ? C11 E64 301 A 1 HETATM 16 O O5 E64 . . . B 2 -1.01 12.777 21.551 0.6 45.26 ? O5 E64 301 A 1 HETATM 17 N N2 E64 . . . B 2 -1.776 10.64 21.369 0.6 40.77 ? N2 E64 301 A 1 HETATM 18 C C12 E64 . . . B 2 -3.064 10.825 21.991 0.6 45.48 ? C12 E64 301 A 1 HETATM 19 C C13 E64 . . . B 2 -4.135 11.228 20.99 0.6 45.3 ? C13 E64 301 A 1 HETATM 20 C C14 E64 . . . B 2 -4.106 12.7 20.62 0.6 44.17 ? C14 E64 301 A 1 HETATM 21 C C15 E64 . . . B 2 -4.911 13.579 21.577 0.6 46.61 ? C15 E64 301 A 1 HETATM 22 N N3 E64 . . . B 2 -6.348 13.353 21.532 0.6 50.55 ? N3 E64 301 A 1 HETATM 23 C C16 E64 . . . B 2 -7.224 14.099 20.856 0.6 52.03 ? C16 E64 301 A 1 HETATM 24 N N4 E64 . . . B 2 -6.853 15.143 20.137 0.6 49.37 ? N4 E64 301 A 1 HETATM 25 N N5 E64 . . . B 2 -8.525 13.786 20.9 0.6 53.4 ? N5 E64 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #