data_9NBJ # _model_server_result.job_id U1Em-xQxxWadpWa41xw44w _model_server_result.datetime_utc '2025-06-27 23:48:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9NBJ # _exptl.entry_id 9NBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.393 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NBJ _cell.length_a 42.5 _cell.length_b 48.9 _cell.length_c 101.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C2 E6C . A E6C 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? # _chem_comp.formula 'C15 H28 N2 O5' _chem_comp.formula_weight 316.393 _chem_comp.id E6C _chem_comp.mon_nstd_flag . _chem_comp.name N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 E6C sing 83 n n O1 HO1 E6C sing 84 n n C2 C3 E6C sing 85 n n C2 C16 E6C sing 86 n n C2 H21 E6C sing 87 n n C2 H22 E6C sing 88 n n C3 C4 E6C sing 89 n n C3 H3 E6C sing 90 n n C4 O5 E6C doub 91 n n C4 N6 E6C sing 92 n n N6 C7 E6C sing 93 n n N6 HN6 E6C sing 94 n n C7 C8 E6C sing 95 n n C7 C19 E6C sing 96 n n C7 H7 E6C sing 97 n n C8 O9 E6C doub 98 n n C8 N10 E6C sing 99 n n N10 C11 E6C sing 100 n n N10 HN1 E6C sing 101 n n C11 C12 E6C sing 102 n n C11 H111 E6C sing 103 n n C11 H112 E6C sing 104 n n C12 C13 E6C sing 105 n n C12 H121 E6C sing 106 n n C12 H122 E6C sing 107 n n C13 C14 E6C sing 108 n n C13 C15 E6C sing 109 n n C13 H13 E6C sing 110 n n C14 H141 E6C sing 111 n n C14 H142 E6C sing 112 n n C14 H143 E6C sing 113 n n C15 H151 E6C sing 114 n n C15 H152 E6C sing 115 n n C15 H153 E6C sing 116 n n C16 O17 E6C doub 117 n n C16 O18 E6C sing 118 n n O18 HO8 E6C sing 119 n n C19 C20 E6C sing 120 n n C19 H191 E6C sing 121 n n C19 H192 E6C sing 122 n n C20 C21 E6C sing 123 n n C20 C22 E6C sing 124 n n C20 H20 E6C sing 125 n n C21 H211 E6C sing 126 n n C21 H212 E6C sing 127 n n C21 H213 E6C sing 128 n n C22 H221 E6C sing 129 n n C22 H222 E6C sing 130 n n C22 H223 E6C sing 131 n n # _atom_sites.entry_id 9NBJ _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E6C A 1 301 301 E6C E6C . C 3 HOH A 1 401 102 HOH HOH . C 3 HOH A 2 402 53 HOH HOH . C 3 HOH A 3 403 69 HOH HOH . C 3 HOH A 4 404 22 HOH HOH . C 3 HOH A 5 405 15 HOH HOH . C 3 HOH A 6 406 86 HOH HOH . C 3 HOH A 7 407 76 HOH HOH . C 3 HOH A 8 408 63 HOH HOH . C 3 HOH A 9 409 60 HOH HOH . C 3 HOH A 10 410 73 HOH HOH . C 3 HOH A 11 411 83 HOH HOH . C 3 HOH A 12 412 98 HOH HOH . C 3 HOH A 13 413 37 HOH HOH . C 3 HOH A 14 414 3 HOH HOH . C 3 HOH A 15 415 4 HOH HOH . C 3 HOH A 16 416 40 HOH HOH . C 3 HOH A 17 417 34 HOH HOH . C 3 HOH A 18 418 19 HOH HOH . C 3 HOH A 19 419 31 HOH HOH . C 3 HOH A 20 420 94 HOH HOH . C 3 HOH A 21 421 65 HOH HOH . C 3 HOH A 22 422 80 HOH HOH . C 3 HOH A 23 423 96 HOH HOH . C 3 HOH A 24 424 70 HOH HOH . C 3 HOH A 25 425 79 HOH HOH . C 3 HOH A 26 426 47 HOH HOH . C 3 HOH A 27 427 14 HOH HOH . C 3 HOH A 28 428 49 HOH HOH . C 3 HOH A 29 429 11 HOH HOH . C 3 HOH A 30 430 20 HOH HOH . C 3 HOH A 31 431 23 HOH HOH . C 3 HOH A 32 432 10 HOH HOH . C 3 HOH A 33 433 2 HOH HOH . C 3 HOH A 34 434 24 HOH HOH . C 3 HOH A 35 435 41 HOH HOH . C 3 HOH A 36 436 59 HOH HOH . C 3 HOH A 37 437 7 HOH HOH . C 3 HOH A 38 438 106 HOH HOH . C 3 HOH A 39 439 93 HOH HOH . C 3 HOH A 40 440 38 HOH HOH . C 3 HOH A 41 441 36 HOH HOH . C 3 HOH A 42 442 16 HOH HOH . C 3 HOH A 43 443 52 HOH HOH . C 3 HOH A 44 444 99 HOH HOH . C 3 HOH A 45 445 104 HOH HOH . C 3 HOH A 46 446 8 HOH HOH . C 3 HOH A 47 447 55 HOH HOH . C 3 HOH A 48 448 84 HOH HOH . C 3 HOH A 49 449 90 HOH HOH . C 3 HOH A 50 450 51 HOH HOH . C 3 HOH A 51 451 64 HOH HOH . C 3 HOH A 52 452 74 HOH HOH . C 3 HOH A 53 453 27 HOH HOH . C 3 HOH A 54 454 85 HOH HOH . C 3 HOH A 55 455 72 HOH HOH . C 3 HOH A 56 456 54 HOH HOH . C 3 HOH A 57 457 101 HOH HOH . C 3 HOH A 58 458 56 HOH HOH . C 3 HOH A 59 459 33 HOH HOH . C 3 HOH A 60 460 39 HOH HOH . C 3 HOH A 61 461 88 HOH HOH . C 3 HOH A 62 462 61 HOH HOH . C 3 HOH A 63 463 12 HOH HOH . C 3 HOH A 64 464 13 HOH HOH . C 3 HOH A 65 465 42 HOH HOH . C 3 HOH A 66 466 1 HOH HOH . C 3 HOH A 67 467 18 HOH HOH . C 3 HOH A 68 468 25 HOH HOH . C 3 HOH A 69 469 32 HOH HOH . C 3 HOH A 70 470 21 HOH HOH . C 3 HOH A 71 471 78 HOH HOH . C 3 HOH A 72 472 58 HOH HOH . C 3 HOH A 73 473 28 HOH HOH . C 3 HOH A 74 474 68 HOH HOH . C 3 HOH A 75 475 44 HOH HOH . C 3 HOH A 76 476 43 HOH HOH . C 3 HOH A 77 477 9 HOH HOH . C 3 HOH A 78 478 97 HOH HOH . C 3 HOH A 79 479 50 HOH HOH . C 3 HOH A 80 480 17 HOH HOH . C 3 HOH A 81 481 57 HOH HOH . C 3 HOH A 82 482 89 HOH HOH . C 3 HOH A 83 483 87 HOH HOH . C 3 HOH A 84 484 46 HOH HOH . C 3 HOH A 85 485 67 HOH HOH . C 3 HOH A 86 486 77 HOH HOH . C 3 HOH A 87 487 26 HOH HOH . C 3 HOH A 88 488 35 HOH HOH . C 3 HOH A 89 489 95 HOH HOH . C 3 HOH A 90 490 100 HOH HOH . C 3 HOH A 91 491 29 HOH HOH . C 3 HOH A 92 492 62 HOH HOH . C 3 HOH A 93 493 103 HOH HOH . C 3 HOH A 94 494 66 HOH HOH . C 3 HOH A 95 495 71 HOH HOH . C 3 HOH A 96 496 82 HOH HOH . C 3 HOH A 97 497 81 HOH HOH . C 3 HOH A 98 498 75 HOH HOH . C 3 HOH A 99 499 45 HOH HOH . C 3 HOH A 100 500 30 HOH HOH . C 3 HOH A 101 501 107 HOH HOH . C 3 HOH A 102 502 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 E6C . . . B 2 0.834 14.524 17.924 0.58 35.37 ? O1 E6C 301 A 1 HETATM 2 C C2 E6C . . . B 2 2.694 13.144 17.207 0.58 32.26 ? C2 E6C 301 A 1 HETATM 3 C C3 E6C . . . B 2 1.185 13.274 17.404 0.58 34.79 ? C3 E6C 301 A 1 HETATM 4 C C4 E6C . . . B 2 0.688 12.162 18.318 0.58 36.04 ? C4 E6C 301 A 1 HETATM 5 O O5 E6C . . . B 2 0.057 11.219 17.881 0.58 34.98 ? O5 E6C 301 A 1 HETATM 6 N N6 E6C . . . B 2 0.99 12.283 19.618 0.58 41.12 ? N6 E6C 301 A 1 HETATM 7 C C7 E6C . . . B 2 0.559 11.289 20.56 0.58 44.34 ? C7 E6C 301 A 1 HETATM 8 C C8 E6C . . . B 2 -0.719 11.799 21.21 0.58 44.76 ? C8 E6C 301 A 1 HETATM 9 O O9 E6C . . . B 2 -0.747 12.88 21.775 0.58 48.86 ? O9 E6C 301 A 1 HETATM 10 N N10 E6C . . . B 2 -1.777 10.99 21.098 0.58 45.42 ? N10 E6C 301 A 1 HETATM 11 C C11 E6C . . . B 2 -3.055 11.364 21.654 0.58 46.54 ? C11 E6C 301 A 1 HETATM 12 C C12 E6C . . . B 2 -3.621 10.219 22.462 0.58 51.26 ? C12 E6C 301 A 1 HETATM 13 C C13 E6C . . . B 2 -3.612 10.406 23.985 0.58 61.12 ? C13 E6C 301 A 1 HETATM 14 C C14 E6C . . . B 2 -2.417 11.241 24.445 0.58 58.61 ? C14 E6C 301 A 1 HETATM 15 C C15 E6C . . . B 2 -4.925 10.97 24.527 0.58 58.61 ? C15 E6C 301 A 1 HETATM 16 C C16 E6C . . . B 2 3.163 14.003 16.019 0.58 31.68 ? C16 E6C 301 A 1 HETATM 17 O O17 E6C . . . B 2 4.133 14.763 16.213 0.58 35.47 ? O17 E6C 301 A 1 HETATM 18 O O18 E6C . . . B 2 2.515 13.87 14.972 0.58 29.04 ? O18 E6C 301 A 1 HETATM 19 C C19 E6C . . . B 2 1.605 11.077 21.648 0.58 42.47 ? C19 E6C 301 A 1 HETATM 20 C C20 E6C . . . B 2 2.501 9.856 21.447 0.58 37.68 ? C20 E6C 301 A 1 HETATM 21 C C21 E6C . . . B 2 2.821 9.299 22.83 0.58 39.66 ? C21 E6C 301 A 1 HETATM 22 C C22 E6C . . . B 2 1.882 8.788 20.546 0.58 36.45 ? C22 E6C 301 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 405 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #