data_9NBN # _model_server_result.job_id U4Sfip6DfWBNHtMVmNPb5w _model_server_result.datetime_utc '2025-06-29 12:51:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9NBN # _exptl.entry_id 9NBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-4-{[(2S)-1-amino-4-methyl-1-oxopentan-2-yl]amino}-3-hydroxy-4-oxobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NBN _cell.length_a 42.5 _cell.length_b 48.9 _cell.length_c 101.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C2 A1BWS . A A1BWS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? # _chem_comp.formula 'C10 H18 N2 O5' _chem_comp.formula_weight 246.26 _chem_comp.id A1BWS _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-4-{[(2S)-1-amino-4-methyl-1-oxopentan-2-yl]amino}-3-hydroxy-4-oxobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 A1BWS doub 1 n n C1 O2 A1BWS sing 2 n n C1 C2 A1BWS sing 3 n n C2 C3 A1BWS sing 4 n n C3 O3 A1BWS sing 5 n n C3 C4 A1BWS sing 6 n n O4 C4 A1BWS doub 7 n n C4 N1 A1BWS sing 8 n n N1 C6 A1BWS sing 9 n n C9 C8 A1BWS sing 10 n n C6 C11 A1BWS sing 11 n n C6 C7 A1BWS sing 12 n n C8 C7 A1BWS sing 13 n n C8 C10 A1BWS sing 14 n n C11 N2 A1BWS sing 15 n n C11 O5 A1BWS doub 16 n n O2 H1 A1BWS sing 17 n n C2 H2 A1BWS sing 18 n n C2 H3 A1BWS sing 19 n n C3 H4 A1BWS sing 20 n n O3 H5 A1BWS sing 21 n n N1 H6 A1BWS sing 22 n n C6 H7 A1BWS sing 23 n n C7 H8 A1BWS sing 24 n n C7 H9 A1BWS sing 25 n n C8 H10 A1BWS sing 26 n n C9 H11 A1BWS sing 27 n n C9 H12 A1BWS sing 28 n n C9 H13 A1BWS sing 29 n n C10 H14 A1BWS sing 30 n n C10 H15 A1BWS sing 31 n n C10 H16 A1BWS sing 32 n n N2 H17 A1BWS sing 33 n n N2 H18 A1BWS sing 34 n n # _atom_sites.entry_id 9NBN _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BWS A 1 301 301 A1BWS E64 . C 3 HOH A 1 401 83 HOH HOH . C 3 HOH A 2 402 13 HOH HOH . C 3 HOH A 3 403 67 HOH HOH . C 3 HOH A 4 404 80 HOH HOH . C 3 HOH A 5 405 23 HOH HOH . C 3 HOH A 6 406 35 HOH HOH . C 3 HOH A 7 407 5 HOH HOH . C 3 HOH A 8 408 71 HOH HOH . C 3 HOH A 9 409 65 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 30 HOH HOH . C 3 HOH A 12 412 74 HOH HOH . C 3 HOH A 13 413 56 HOH HOH . C 3 HOH A 14 414 45 HOH HOH . C 3 HOH A 15 415 72 HOH HOH . C 3 HOH A 16 416 26 HOH HOH . C 3 HOH A 17 417 15 HOH HOH . C 3 HOH A 18 418 1 HOH HOH . C 3 HOH A 19 419 58 HOH HOH . C 3 HOH A 20 420 18 HOH HOH . C 3 HOH A 21 421 12 HOH HOH . C 3 HOH A 22 422 34 HOH HOH . C 3 HOH A 23 423 63 HOH HOH . C 3 HOH A 24 424 60 HOH HOH . C 3 HOH A 25 425 16 HOH HOH . C 3 HOH A 26 426 25 HOH HOH . C 3 HOH A 27 427 10 HOH HOH . C 3 HOH A 28 428 42 HOH HOH . C 3 HOH A 29 429 59 HOH HOH . C 3 HOH A 30 430 9 HOH HOH . C 3 HOH A 31 431 7 HOH HOH . C 3 HOH A 32 432 4 HOH HOH . C 3 HOH A 33 433 68 HOH HOH . C 3 HOH A 34 434 57 HOH HOH . C 3 HOH A 35 435 79 HOH HOH . C 3 HOH A 36 436 3 HOH HOH . C 3 HOH A 37 437 29 HOH HOH . C 3 HOH A 38 438 61 HOH HOH . C 3 HOH A 39 439 38 HOH HOH . C 3 HOH A 40 440 82 HOH HOH . C 3 HOH A 41 441 33 HOH HOH . C 3 HOH A 42 442 62 HOH HOH . C 3 HOH A 43 443 49 HOH HOH . C 3 HOH A 44 444 39 HOH HOH . C 3 HOH A 45 445 64 HOH HOH . C 3 HOH A 46 446 48 HOH HOH . C 3 HOH A 47 447 31 HOH HOH . C 3 HOH A 48 448 27 HOH HOH . C 3 HOH A 49 449 47 HOH HOH . C 3 HOH A 50 450 66 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 36 HOH HOH . C 3 HOH A 53 453 40 HOH HOH . C 3 HOH A 54 454 43 HOH HOH . C 3 HOH A 55 455 54 HOH HOH . C 3 HOH A 56 456 14 HOH HOH . C 3 HOH A 57 457 53 HOH HOH . C 3 HOH A 58 458 69 HOH HOH . C 3 HOH A 59 459 76 HOH HOH . C 3 HOH A 60 460 8 HOH HOH . C 3 HOH A 61 461 20 HOH HOH . C 3 HOH A 62 462 70 HOH HOH . C 3 HOH A 63 463 50 HOH HOH . C 3 HOH A 64 464 44 HOH HOH . C 3 HOH A 65 465 24 HOH HOH . C 3 HOH A 66 466 17 HOH HOH . C 3 HOH A 67 467 75 HOH HOH . C 3 HOH A 68 468 52 HOH HOH . C 3 HOH A 69 469 55 HOH HOH . C 3 HOH A 70 470 6 HOH HOH . C 3 HOH A 71 471 28 HOH HOH . C 3 HOH A 72 472 77 HOH HOH . C 3 HOH A 73 473 32 HOH HOH . C 3 HOH A 74 474 46 HOH HOH . C 3 HOH A 75 475 78 HOH HOH . C 3 HOH A 76 476 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1BWS . . . B 2 3.022 14.017 16.052 0.73 36.12 ? C1 A1BWS 301 A 1 HETATM 2 O O1 A1BWS . . . B 2 2.453 13.859 14.974 0.73 34.82 ? O1 A1BWS 301 A 1 HETATM 3 O O2 A1BWS . . . B 2 3.913 14.895 16.274 0.73 41.79 ? O2 A1BWS 301 A 1 HETATM 4 C C2 A1BWS . . . B 2 2.657 13.12 17.241 0.73 38.58 ? C2 A1BWS 301 A 1 HETATM 5 C C3 A1BWS . . . B 2 1.164 13.196 17.535 0.73 43.5 ? C3 A1BWS 301 A 1 HETATM 6 O O3 A1BWS . . . B 2 0.894 14.47 18.077 0.73 39.01 ? O3 A1BWS 301 A 1 HETATM 7 C C4 A1BWS . . . B 2 0.582 12.015 18.35 0.73 39.48 ? C4 A1BWS 301 A 1 HETATM 8 O O4 A1BWS . . . B 2 0.075 11.064 17.767 0.73 37.35 ? O4 A1BWS 301 A 1 HETATM 9 N N1 A1BWS . . . B 2 0.632 12.091 19.694 0.73 49.65 ? N1 A1BWS 301 A 1 HETATM 10 C C6 A1BWS . . . B 2 0.085 11.066 20.576 0.73 51.2 ? C6 A1BWS 301 A 1 HETATM 11 C C7 A1BWS . . . B 2 1.04 10.623 21.665 0.73 38 ? C7 A1BWS 301 A 1 HETATM 12 C C8 A1BWS . . . B 2 2.265 9.835 21.24 0.73 45.34 ? C8 A1BWS 301 A 1 HETATM 13 C C9 A1BWS . . . B 2 1.829 8.563 20.518 0.73 41.85 ? C9 A1BWS 301 A 1 HETATM 14 C C10 A1BWS . . . B 2 3.065 9.509 22.494 0.73 40.93 ? C10 A1BWS 301 A 1 HETATM 15 C C11 A1BWS . . . B 2 -1.068 11.722 21.329 0.73 50.17 ? C11 A1BWS 301 A 1 HETATM 16 O O5 A1BWS . . . B 2 -0.852 12.812 21.844 0.73 51.82 ? O5 A1BWS 301 A 1 HETATM 17 N N2 A1BWS . . . B 2 -2.233 11.04 21.383 0.73 45.95 ? N2 A1BWS 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #