data_9NCA # _model_server_result.job_id 13OwIp2TTznnAVsKt_Wc-Q _model_server_result.datetime_utc '2025-06-27 21:45:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9NCA # _exptl.entry_id 9NCA _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 316.393 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NCA _cell.length_a 42.74 _cell.length_b 48.96 _cell.length_c 99.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C2 E64 . A E64 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.813 ? covale ? covale2 A SG CYS 25 A CYS 25 1_555 C C2 E6C . A E6C 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.805 ? # _chem_comp.formula 'C15 H28 N2 O5' _chem_comp.formula_weight 316.393 _chem_comp.id E6C _chem_comp.mon_nstd_flag . _chem_comp.name N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 E6C sing 137 n n O1 HO1 E6C sing 138 n n C2 C3 E6C sing 139 n n C2 C16 E6C sing 140 n n C2 H21 E6C sing 141 n n C2 H22 E6C sing 142 n n C3 C4 E6C sing 143 n n C3 H3 E6C sing 144 n n C4 O5 E6C doub 145 n n C4 N6 E6C sing 146 n n N6 C7 E6C sing 147 n n N6 HN6 E6C sing 148 n n C7 C8 E6C sing 149 n n C7 C19 E6C sing 150 n n C7 H7 E6C sing 151 n n C8 O9 E6C doub 152 n n C8 N10 E6C sing 153 n n N10 C11 E6C sing 154 n n N10 HN1 E6C sing 155 n n C11 C12 E6C sing 156 n n C11 H111 E6C sing 157 n n C11 H112 E6C sing 158 n n C12 C13 E6C sing 159 n n C12 H121 E6C sing 160 n n C12 H122 E6C sing 161 n n C13 C14 E6C sing 162 n n C13 C15 E6C sing 163 n n C13 H13 E6C sing 164 n n C14 H141 E6C sing 165 n n C14 H142 E6C sing 166 n n C14 H143 E6C sing 167 n n C15 H151 E6C sing 168 n n C15 H152 E6C sing 169 n n C15 H153 E6C sing 170 n n C16 O17 E6C doub 171 n n C16 O18 E6C sing 172 n n O18 HO8 E6C sing 173 n n C19 C20 E6C sing 174 n n C19 H191 E6C sing 175 n n C19 H192 E6C sing 176 n n C20 C21 E6C sing 177 n n C20 C22 E6C sing 178 n n C20 H20 E6C sing 179 n n C21 H211 E6C sing 180 n n C21 H212 E6C sing 181 n n C21 H213 E6C sing 182 n n C22 H221 E6C sing 183 n n C22 H222 E6C sing 184 n n C22 H223 E6C sing 185 n n # _atom_sites.entry_id 9NCA _atom_sites.fract_transf_matrix[1][1] 0.023397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E64 A 1 301 301 E64 E64 . C 3 E6C A 1 302 302 E6C E6C . D 4 HOH A 1 401 2 HOH HOH . D 4 HOH A 2 402 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 E6C . B . C 3 0.907 14.442 17.828 0.42 23.44 ? O1 E6C 302 A 1 HETATM 2 C C2 E6C . B . C 3 2.039 12.717 16.517 0.42 47.66 ? C2 E6C 302 A 1 HETATM 3 C C3 E6C . B . C 3 0.755 13.197 17.201 0.42 35.27 ? C3 E6C 302 A 1 HETATM 4 C C4 E6C . B . C 3 0.293 12.124 18.186 0.42 33.39 ? C4 E6C 302 A 1 HETATM 5 O O5 E6C . B . C 3 -0.106 11.035 17.788 0.42 20.2 ? O5 E6C 302 A 1 HETATM 6 N N6 E6C . B . C 3 0.354 12.435 19.495 0.42 38.28 ? N6 E6C 302 A 1 HETATM 7 C C7 E6C . B . C 3 -0.051 11.491 20.51 0.42 37.79 ? C7 E6C 302 A 1 HETATM 8 C C8 E6C . B . C 3 -1.274 11.982 21.294 0.42 47.46 ? C8 E6C 302 A 1 HETATM 9 O O9 E6C . B . C 3 -1.215 12.964 22.021 0.42 50.78 ? O9 E6C 302 A 1 HETATM 10 N N10 E6C . B . C 3 -2.381 11.245 21.126 0.42 48.5 ? N10 E6C 302 A 1 HETATM 11 C C11 E6C . B . C 3 -3.643 11.533 21.781 0.42 61.58 ? C11 E6C 302 A 1 HETATM 12 C C12 E6C . B . C 3 -3.91 10.504 22.871 0.42 80.03 ? C12 E6C 302 A 1 HETATM 13 C C13 E6C . B . C 3 -4.328 11.106 24.214 0.42 92.26 ? C13 E6C 302 A 1 HETATM 14 C C14 E6C . B . C 3 -3.283 12.108 24.699 0.42 91.61 ? C14 E6C 302 A 1 HETATM 15 C C15 E6C . B . C 3 -5.71 11.748 24.149 0.42 84.35 ? C15 E6C 302 A 1 HETATM 16 C C16 E6C . B . C 3 2.848 13.835 15.818 0.42 47.68 ? C16 E6C 302 A 1 HETATM 17 O O17 E6C . B . C 3 3.936 14.153 16.338 0.42 34.48 ? O17 E6C 302 A 1 HETATM 18 O O18 E6C . B . C 3 2.355 14.328 14.787 0.42 34.89 ? O18 E6C 302 A 1 HETATM 19 C C19 E6C . B . C 3 1.079 11.236 21.516 0.42 31.95 ? C19 E6C 302 A 1 HETATM 20 C C20 E6C . B . C 3 2.063 10.111 21.168 0.42 23.96 ? C20 E6C 302 A 1 HETATM 21 C C21 E6C . B . C 3 1.376 9.047 20.314 0.42 17.39 ? C21 E6C 302 A 1 HETATM 22 C C22 E6C . B . C 3 2.683 9.492 22.414 0.42 18.01 ? C22 E6C 302 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #