data_9NJH # _model_server_result.job_id W5QFua9yUdgGII28ZUUR-A _model_server_result.datetime_utc '2025-07-17 18:47:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9njh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9NJH # _exptl.entry_id 9NJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9NJH _cell.length_a 97.926 _cell.length_b 97.926 _cell.length_c 194.974 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 48.963 84.806404 32.495667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 B N1 DA 4 B DA 4 1_555 B N3 DT 17 B DT 17 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 4 B DA 4 1_555 B O4 DT 17 B DT 17 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 5 B DG 5 1_555 B N3 DC 16 B DC 16 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 5 B DG 5 1_555 B O2 DC 16 B DC 16 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 5 B DG 5 1_555 B N4 DC 16 B DC 16 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 6 B DG 6 1_555 B N3 DC 15 B DC 15 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 6 B DG 6 1_555 B O2 DC 15 B DC 15 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 6 B DG 6 1_555 B N4 DC 15 B DC 15 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 7 B DG 7 1_555 B N3 DC 14 B DC 14 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 7 B DG 7 1_555 B O2 DC 14 B DC 14 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 7 B DG 7 1_555 B N4 DC 14 B DC 14 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 8 B DT 8 1_555 B N1 DA 13 B DA 13 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 8 B DT 8 1_555 B N6 DA 13 B DA 13 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 9 B DC 9 1_555 B N1 DG 12 B DG 12 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 9 B DC 9 1_555 B O6 DG 12 B DG 12 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 9 B DC 9 1_555 B N2 DG 12 B DG 12 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DC 10 B DC 10 1_555 B N1 DG 11 B DG 11 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DC 10 B DC 10 1_555 B O6 DG 11 B DG 11 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DC 10 B DC 10 1_555 B N2 DG 11 B DG 11 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 11 B DG 11 1_555 B N3 DC 10 B DC 10 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 11 B DG 11 1_555 B O2 DC 10 B DC 10 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 11 B DG 11 1_555 B N4 DC 10 B DC 10 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DG 12 B DG 12 1_555 B N3 DC 9 B DC 9 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N2 DG 12 B DG 12 1_555 B O2 DC 9 B DC 9 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O6 DG 12 B DG 12 1_555 B N4 DC 9 B DC 9 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DA 13 B DA 13 1_555 B N3 DT 8 B DT 8 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N6 DA 13 B DA 13 1_555 B O4 DT 8 B DT 8 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N3 DC 14 B DC 14 1_555 B N1 DG 7 B DG 7 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N4 DC 14 B DC 14 1_555 B O6 DG 7 B DG 7 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O2 DC 14 B DC 14 1_555 B N2 DG 7 B DG 7 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 DC 15 B DC 15 1_555 B N1 DG 6 B DG 6 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N4 DC 15 B DC 15 1_555 B O6 DG 6 B DG 6 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B O2 DC 15 B DC 15 1_555 B N2 DG 6 B DG 6 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N3 DC 16 B DC 16 1_555 B N1 DG 5 B DG 5 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B N4 DC 16 B DC 16 1_555 B O6 DG 5 B DG 5 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B O2 DC 16 B DC 16 1_555 B N2 DG 5 B DG 5 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B N3 DT 17 B DT 17 1_555 B N1 DA 4 B DA 4 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 B O4 DT 17 B DT 17 1_555 B N6 DA 4 B DA 4 10_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9NJH _atom_sites.fract_transf_matrix[1][1] 0.010212 _atom_sites.fract_transf_matrix[1][2] 0.005896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 501 1 CA CA . D 4 HOH A 1 601 21 HOH HOH . D 4 HOH A 2 602 47 HOH HOH . D 4 HOH A 3 603 39 HOH HOH . D 4 HOH A 4 604 40 HOH HOH . D 4 HOH A 5 605 10 HOH HOH . D 4 HOH A 6 606 48 HOH HOH . D 4 HOH A 7 607 65 HOH HOH . D 4 HOH A 8 608 31 HOH HOH . D 4 HOH A 9 609 13 HOH HOH . D 4 HOH A 10 610 9 HOH HOH . D 4 HOH A 11 611 41 HOH HOH . D 4 HOH A 12 612 18 HOH HOH . D 4 HOH A 13 613 43 HOH HOH . D 4 HOH A 14 614 36 HOH HOH . D 4 HOH A 15 615 62 HOH HOH . D 4 HOH A 16 616 46 HOH HOH . D 4 HOH A 17 617 58 HOH HOH . D 4 HOH A 18 618 56 HOH HOH . D 4 HOH A 19 619 12 HOH HOH . D 4 HOH A 20 620 28 HOH HOH . D 4 HOH A 21 621 42 HOH HOH . D 4 HOH A 22 622 19 HOH HOH . D 4 HOH A 23 623 22 HOH HOH . D 4 HOH A 24 624 32 HOH HOH . D 4 HOH A 25 625 6 HOH HOH . D 4 HOH A 26 626 51 HOH HOH . D 4 HOH A 27 627 11 HOH HOH . D 4 HOH A 28 628 60 HOH HOH . D 4 HOH A 29 629 5 HOH HOH . D 4 HOH A 30 630 1 HOH HOH . D 4 HOH A 31 631 44 HOH HOH . D 4 HOH A 32 632 25 HOH HOH . D 4 HOH A 33 633 45 HOH HOH . D 4 HOH A 34 634 59 HOH HOH . D 4 HOH A 35 635 27 HOH HOH . D 4 HOH A 36 636 3 HOH HOH . D 4 HOH A 37 637 67 HOH HOH . D 4 HOH A 38 638 34 HOH HOH . D 4 HOH A 39 639 53 HOH HOH . D 4 HOH A 40 640 37 HOH HOH . D 4 HOH A 41 641 8 HOH HOH . D 4 HOH A 42 642 33 HOH HOH . D 4 HOH A 43 643 69 HOH HOH . D 4 HOH A 44 644 52 HOH HOH . D 4 HOH A 45 645 14 HOH HOH . D 4 HOH A 46 646 54 HOH HOH . D 4 HOH A 47 647 16 HOH HOH . D 4 HOH A 48 648 24 HOH HOH . D 4 HOH A 49 649 64 HOH HOH . D 4 HOH A 50 650 38 HOH HOH . D 4 HOH A 51 651 55 HOH HOH . D 4 HOH A 52 652 2 HOH HOH . D 4 HOH A 53 653 4 HOH HOH . D 4 HOH A 54 654 29 HOH HOH . D 4 HOH A 55 655 74 HOH HOH . D 4 HOH A 56 656 63 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 68 HOH HOH . D 4 HOH A 59 659 20 HOH HOH . D 4 HOH A 60 660 7 HOH HOH . D 4 HOH A 61 661 26 HOH HOH . D 4 HOH A 62 662 30 HOH HOH . D 4 HOH A 63 663 73 HOH HOH . D 4 HOH A 64 664 15 HOH HOH . D 4 HOH A 65 665 17 HOH HOH . D 4 HOH A 66 666 71 HOH HOH . D 4 HOH A 67 667 75 HOH HOH . D 4 HOH A 68 668 76 HOH HOH . E 4 HOH B 1 101 70 HOH HOH . E 4 HOH B 2 102 72 HOH HOH . E 4 HOH B 3 103 35 HOH HOH . E 4 HOH B 4 104 49 HOH HOH . E 4 HOH B 5 105 50 HOH HOH . E 4 HOH B 6 106 61 HOH HOH . E 4 HOH B 7 107 23 HOH HOH . E 4 HOH B 8 108 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.629 _atom_site.Cartn_y 18.587 _atom_site.Cartn_z 14.016 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #