data_9NRA # _model_server_result.job_id pEpxfPYdMye8Xn4eL_SLHQ _model_server_result.datetime_utc '2025-07-07 21:51:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":901}' # _entry.id 9NRA # _exptl.entry_id 9NRA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 409.254 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NRA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 326 A CYS 714 1_555 A SG CYS 381 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 324 B CYS 720 1_555 B SG CYS 379 B CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 C SG CYS 326 C CYS 714 1_555 C SG CYS 381 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 324 D CYS 720 1_555 D SG CYS 379 D CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 F SG CYS 36 F CYS 40 1_555 F SG CYS 64 F CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 63 F CYS 67 1_555 F SG CYS 73 F CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 H SG CYS 36 H CYS 40 1_555 H SG CYS 64 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 H SG CYS 63 H CYS 67 1_555 H SG CYS 73 H CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C14 H15 F3 N3 O6 P' _chem_comp.formula_weight 409.254 _chem_comp.id ZK1 _chem_comp.mon_nstd_flag . _chem_comp.name '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[[3,4-Dihydro-7-(4-morpholinyl)-2,3-dioxo-6-(trifluorom ethyl)-1(2H)-quinoxalinyl]methyl]phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT OAA ZK1 doub 374 n n CAU OAB ZK1 doub 375 n n OAC PBA ZK1 doub 376 n n OAD PBA ZK1 sing 377 n n OAD HOAD ZK1 sing 378 n n PBA OAE ZK1 sing 379 n n OAE HOAE ZK1 sing 380 n n FAF CAZ ZK1 sing 381 n n CAZ FAG ZK1 sing 382 n n CAZ FAH ZK1 sing 383 n n CAR CAI ZK1 doub 384 n y CAI CAW ZK1 sing 385 n y CAI HAI ZK1 sing 386 n n CAS CAJ ZK1 doub 387 n y CAJ CAV ZK1 sing 388 n y CAJ HAJ ZK1 sing 389 n n CAK CAM ZK1 sing 390 n n CAK OAQ ZK1 sing 391 n n CAK HAK ZK1 sing 392 n n CAK HAKA ZK1 sing 393 n n OAQ CAL ZK1 sing 394 n n CAL CAN ZK1 sing 395 n n CAL HAL ZK1 sing 396 n n CAL HALA ZK1 sing 397 n n CAM NAX ZK1 sing 398 n n CAM HAM ZK1 sing 399 n n CAM HAMA ZK1 sing 400 n n NAX CAN ZK1 sing 401 n n CAN HAN ZK1 sing 402 n n CAN HANA ZK1 sing 403 n n PBA CAO ZK1 sing 404 n n NAY CAO ZK1 sing 405 n n CAO HAO ZK1 sing 406 n n CAO HAOA ZK1 sing 407 n n CAV NAP ZK1 sing 408 n n NAP CAT ZK1 sing 409 n n NAP HNAP ZK1 sing 410 n n NAX CAR ZK1 sing 411 n n CAS CAR ZK1 sing 412 n y CAZ CAS ZK1 sing 413 n n CAT CAU ZK1 sing 414 n n NAY CAU ZK1 sing 415 n n CAV CAW ZK1 doub 416 n y CAW NAY ZK1 sing 417 n n # _atom_sites.entry_id 9NRA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 ZK1 A 1 901 898 ZK1 ZK1 . J 5 ZK1 B 1 901 903 ZK1 ZK1 . K 5 ZK1 C 1 901 898 ZK1 ZK1 . L 5 ZK1 D 1 901 903 ZK1 ZK1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ZK1 . . . I 5 230.626 231.727 248.866 1 90.88 ? OAA ZK1 901 A 1 HETATM 2 O OAB ZK1 . . . I 5 231.663 229.301 249.4 1 90.88 ? OAB ZK1 901 A 1 HETATM 3 O OAC ZK1 . . . I 5 230.584 226.8 246.192 1 90.88 ? OAC ZK1 901 A 1 HETATM 4 O OAD ZK1 . . . I 5 232.73 225.414 246.12 1 90.88 ? OAD ZK1 901 A 1 HETATM 5 O OAE ZK1 . . . I 5 231.366 225.549 248.308 1 90.88 ? OAE ZK1 901 A 1 HETATM 6 F FAF ZK1 . . . I 5 232.257 232.461 241.949 1 90.88 ? FAF ZK1 901 A 1 HETATM 7 F FAG ZK1 . . . I 5 231.318 230.686 241.204 1 90.88 ? FAG ZK1 901 A 1 HETATM 8 F FAH ZK1 . . . I 5 233.467 230.819 241.283 1 90.88 ? FAH ZK1 901 A 1 HETATM 9 C CAI ZK1 . . . I 5 232.837 228.796 244.88 1 90.88 ? CAI ZK1 901 A 1 HETATM 10 C CAJ ZK1 . . . I 5 231.761 231.292 244.371 1 90.88 ? CAJ ZK1 901 A 1 HETATM 11 C CAK ZK1 . . . I 5 233.247 226.767 240.902 1 90.88 ? CAK ZK1 901 A 1 HETATM 12 C CAL ZK1 . . . I 5 235.379 227.381 241.643 1 90.88 ? CAL ZK1 901 A 1 HETATM 13 C CAM ZK1 . . . I 5 232.6 227.44 242.1 1 90.88 ? CAM ZK1 901 A 1 HETATM 14 C CAN ZK1 . . . I 5 234.797 228.111 242.84 1 90.88 ? CAN ZK1 901 A 1 HETATM 15 C CAO ZK1 . . . I 5 232.813 227.696 247.517 1 90.88 ? CAO ZK1 901 A 1 HETATM 16 N NAP ZK1 . . . I 5 231.182 231.501 246.69 1 90.88 ? NAP ZK1 901 A 1 HETATM 17 O OAQ ZK1 . . . I 5 234.551 226.321 241.211 1 90.88 ? OAQ ZK1 901 A 1 HETATM 18 C CAR ZK1 . . . I 5 232.864 229.304 243.591 1 90.88 ? CAR ZK1 901 A 1 HETATM 19 C CAS ZK1 . . . I 5 232.319 230.563 243.334 1 90.88 ? CAS ZK1 901 A 1 HETATM 20 C CAT ZK1 . . . I 5 231.119 231.078 247.967 1 90.88 ? CAT ZK1 901 A 1 HETATM 21 C CAU ZK1 . . . I 5 231.708 229.708 248.256 1 90.88 ? CAU ZK1 901 A 1 HETATM 22 C CAV ZK1 . . . I 5 231.739 230.775 245.657 1 90.88 ? CAV ZK1 901 A 1 HETATM 23 C CAW ZK1 . . . I 5 232.279 229.515 245.931 1 90.88 ? CAW ZK1 901 A 1 HETATM 24 N NAX ZK1 . . . I 5 233.437 228.55 242.535 1 90.88 ? NAX ZK1 901 A 1 HETATM 25 N NAY ZK1 . . . I 5 232.247 229.012 247.225 1 90.88 ? NAY ZK1 901 A 1 HETATM 26 C CAZ ZK1 . . . I 5 232.344 231.121 241.946 1 90.88 ? CAZ ZK1 901 A 1 HETATM 27 P PBA ZK1 . . . I 5 231.758 226.211 246.991 1 90.88 ? PBA ZK1 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #