data_9NSL # _model_server_result.job_id wPtQZd9gaOVczbbFHKUXAg _model_server_result.datetime_utc '2025-08-31 04:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9NSL # _exptl.entry_id 9NSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.756 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-1-[(3R,5R,7R)-adamantan-1-yl]-2-({(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-2-oxoethyl]-N~2~-(tert-butylcarbamoyl)-3-methyl-L-valinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.69 _cell.angle_gamma 90 _cell.entry_id 9NSL _cell.length_a 97.307 _cell.length_b 81.745 _cell.length_c 54.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 169.954948 0 49.050394 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C17 _struct_conn.ptnr2_label_comp_id A1B21 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1B21 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.801 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H50 N6 O4' _chem_comp.formula_weight 558.756 _chem_comp.id A1B21 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-1-[(3R,5R,7R)-adamantan-1-yl]-2-({(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-2-oxoethyl]-N~2~-(tert-butylcarbamoyl)-3-methyl-L-valinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C29 A1B21 sing 1 n n C28 C27 A1B21 sing 2 n n C38 C36 A1B21 sing 3 n n C29 C30 A1B21 sing 4 n n C29 C34 A1B21 sing 5 n n C39 C36 A1B21 sing 6 n n C27 C26 A1B21 sing 7 n n C27 C32 A1B21 sing 8 n n C30 C31 A1B21 sing 9 n n C26 C31 A1B21 sing 10 n n C36 C37 A1B21 sing 11 n n C36 N2 A1B21 sing 12 n n C31 C35 A1B21 sing 13 n n O1 C3 A1B21 doub 14 n n C34 C33 A1B21 sing 15 n n C32 C33 A1B21 sing 16 n n N2 C3 A1B21 sing 17 n n C33 C35 A1B21 sing 18 n n C33 C14 A1B21 sing 19 n n C3 N11 A1B21 sing 20 n n N4 C14 A1B21 sing 21 n n N4 C12 A1B21 sing 22 n n N11 C10 A1B21 sing 23 n n C14 C13 A1B21 sing 24 n n C10 C12 A1B21 sing 25 n n C10 C9 A1B21 sing 26 n n C6 C9 A1B21 sing 27 n n C12 O5 A1B21 doub 28 n n O19 C13 A1B21 doub 29 n n C13 N15 A1B21 sing 30 n n C9 C8 A1B21 sing 31 n n C9 C7 A1B21 sing 32 n n N15 C16 A1B21 sing 33 n n C16 C17 A1B21 sing 34 n n C16 C18 A1B21 sing 35 n n C17 N40 A1B21 doub 36 n n C18 C20 A1B21 sing 37 n n C20 C21 A1B21 sing 38 n n C20 C24 A1B21 sing 39 n n C21 C22 A1B21 sing 40 n n C24 O25 A1B21 doub 41 n n C24 N23 A1B21 sing 42 n n C22 N23 A1B21 sing 43 n n C6 H1 A1B21 sing 44 n n C6 H2 A1B21 sing 45 n n C6 H3 A1B21 sing 46 n n C7 H4 A1B21 sing 47 n n C7 H5 A1B21 sing 48 n n C7 H6 A1B21 sing 49 n n C8 H7 A1B21 sing 50 n n C8 H8 A1B21 sing 51 n n C8 H9 A1B21 sing 52 n n C10 H10 A1B21 sing 53 n n C14 H11 A1B21 sing 54 n n C16 H12 A1B21 sing 55 n n C17 H13 A1B21 sing 56 n n C18 H14 A1B21 sing 57 n n C18 H15 A1B21 sing 58 n n C20 H16 A1B21 sing 59 n n C21 H17 A1B21 sing 60 n n C21 H18 A1B21 sing 61 n n C22 H19 A1B21 sing 62 n n C22 H20 A1B21 sing 63 n n C26 H21 A1B21 sing 64 n n C26 H22 A1B21 sing 65 n n C27 H23 A1B21 sing 66 n n C28 H24 A1B21 sing 67 n n C28 H25 A1B21 sing 68 n n C29 H26 A1B21 sing 69 n n C30 H27 A1B21 sing 70 n n C30 H28 A1B21 sing 71 n n C31 H29 A1B21 sing 72 n n C32 H30 A1B21 sing 73 n n C32 H31 A1B21 sing 74 n n C34 H32 A1B21 sing 75 n n C34 H33 A1B21 sing 76 n n C35 H34 A1B21 sing 77 n n C35 H35 A1B21 sing 78 n n C37 H36 A1B21 sing 79 n n C37 H37 A1B21 sing 80 n n C37 H38 A1B21 sing 81 n n C38 H39 A1B21 sing 82 n n C38 H40 A1B21 sing 83 n n C38 H41 A1B21 sing 84 n n C39 H42 A1B21 sing 85 n n C39 H43 A1B21 sing 86 n n C39 H44 A1B21 sing 87 n n N11 H45 A1B21 sing 88 n n N15 H46 A1B21 sing 89 n n N2 H47 A1B21 sing 90 n n N23 H48 A1B21 sing 91 n n N4 H49 A1B21 sing 92 n n N40 H50 A1B21 sing 93 n n # _atom_sites.entry_id 9NSL _atom_sites.fract_transf_matrix[1][1] 0.010277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1B21 A 1 401 401 A1B21 BB4 . C 3 HOH A 1 501 36 HOH HOH . C 3 HOH A 2 502 111 HOH HOH . C 3 HOH A 3 503 9 HOH HOH . C 3 HOH A 4 504 39 HOH HOH . C 3 HOH A 5 505 41 HOH HOH . C 3 HOH A 6 506 55 HOH HOH . C 3 HOH A 7 507 19 HOH HOH . C 3 HOH A 8 508 25 HOH HOH . C 3 HOH A 9 509 114 HOH HOH . C 3 HOH A 10 510 67 HOH HOH . C 3 HOH A 11 511 59 HOH HOH . C 3 HOH A 12 512 18 HOH HOH . C 3 HOH A 13 513 50 HOH HOH . C 3 HOH A 14 514 129 HOH HOH . C 3 HOH A 15 515 48 HOH HOH . C 3 HOH A 16 516 29 HOH HOH . C 3 HOH A 17 517 103 HOH HOH . C 3 HOH A 18 518 76 HOH HOH . C 3 HOH A 19 519 98 HOH HOH . C 3 HOH A 20 520 93 HOH HOH . C 3 HOH A 21 521 57 HOH HOH . C 3 HOH A 22 522 121 HOH HOH . C 3 HOH A 23 523 4 HOH HOH . C 3 HOH A 24 524 126 HOH HOH . C 3 HOH A 25 525 54 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 70 HOH HOH . C 3 HOH A 28 528 3 HOH HOH . C 3 HOH A 29 529 20 HOH HOH . C 3 HOH A 30 530 90 HOH HOH . C 3 HOH A 31 531 34 HOH HOH . C 3 HOH A 32 532 6 HOH HOH . C 3 HOH A 33 533 24 HOH HOH . C 3 HOH A 34 534 32 HOH HOH . C 3 HOH A 35 535 15 HOH HOH . C 3 HOH A 36 536 28 HOH HOH . C 3 HOH A 37 537 77 HOH HOH . C 3 HOH A 38 538 86 HOH HOH . C 3 HOH A 39 539 43 HOH HOH . C 3 HOH A 40 540 27 HOH HOH . C 3 HOH A 41 541 16 HOH HOH . C 3 HOH A 42 542 44 HOH HOH . C 3 HOH A 43 543 45 HOH HOH . C 3 HOH A 44 544 87 HOH HOH . C 3 HOH A 45 545 117 HOH HOH . C 3 HOH A 46 546 35 HOH HOH . C 3 HOH A 47 547 2 HOH HOH . C 3 HOH A 48 548 46 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 21 HOH HOH . C 3 HOH A 51 551 125 HOH HOH . C 3 HOH A 52 552 5 HOH HOH . C 3 HOH A 53 553 106 HOH HOH . C 3 HOH A 54 554 13 HOH HOH . C 3 HOH A 55 555 38 HOH HOH . C 3 HOH A 56 556 1 HOH HOH . C 3 HOH A 57 557 12 HOH HOH . C 3 HOH A 58 558 74 HOH HOH . C 3 HOH A 59 559 11 HOH HOH . C 3 HOH A 60 560 52 HOH HOH . C 3 HOH A 61 561 10 HOH HOH . C 3 HOH A 62 562 7 HOH HOH . C 3 HOH A 63 563 53 HOH HOH . C 3 HOH A 64 564 14 HOH HOH . C 3 HOH A 65 565 92 HOH HOH . C 3 HOH A 66 566 22 HOH HOH . C 3 HOH A 67 567 91 HOH HOH . C 3 HOH A 68 568 120 HOH HOH . C 3 HOH A 69 569 37 HOH HOH . C 3 HOH A 70 570 69 HOH HOH . C 3 HOH A 71 571 42 HOH HOH . C 3 HOH A 72 572 65 HOH HOH . C 3 HOH A 73 573 109 HOH HOH . C 3 HOH A 74 574 116 HOH HOH . C 3 HOH A 75 575 102 HOH HOH . C 3 HOH A 76 576 124 HOH HOH . C 3 HOH A 77 577 80 HOH HOH . C 3 HOH A 78 578 73 HOH HOH . C 3 HOH A 79 579 64 HOH HOH . C 3 HOH A 80 580 30 HOH HOH . C 3 HOH A 81 581 84 HOH HOH . C 3 HOH A 82 582 68 HOH HOH . C 3 HOH A 83 583 105 HOH HOH . C 3 HOH A 84 584 115 HOH HOH . C 3 HOH A 85 585 99 HOH HOH . C 3 HOH A 86 586 23 HOH HOH . C 3 HOH A 87 587 58 HOH HOH . C 3 HOH A 88 588 40 HOH HOH . C 3 HOH A 89 589 62 HOH HOH . C 3 HOH A 90 590 128 HOH HOH . C 3 HOH A 91 591 127 HOH HOH . C 3 HOH A 92 592 96 HOH HOH . C 3 HOH A 93 593 94 HOH HOH . C 3 HOH A 94 594 71 HOH HOH . C 3 HOH A 95 595 61 HOH HOH . C 3 HOH A 96 596 75 HOH HOH . C 3 HOH A 97 597 47 HOH HOH . C 3 HOH A 98 598 81 HOH HOH . C 3 HOH A 99 599 31 HOH HOH . C 3 HOH A 100 600 101 HOH HOH . C 3 HOH A 101 601 82 HOH HOH . C 3 HOH A 102 602 122 HOH HOH . C 3 HOH A 103 603 8 HOH HOH . C 3 HOH A 104 604 110 HOH HOH . C 3 HOH A 105 605 89 HOH HOH . C 3 HOH A 106 606 63 HOH HOH . C 3 HOH A 107 607 60 HOH HOH . C 3 HOH A 108 608 134 HOH HOH . C 3 HOH A 109 609 131 HOH HOH . C 3 HOH A 110 610 66 HOH HOH . C 3 HOH A 111 611 113 HOH HOH . C 3 HOH A 112 612 72 HOH HOH . C 3 HOH A 113 613 104 HOH HOH . C 3 HOH A 114 614 132 HOH HOH . C 3 HOH A 115 615 118 HOH HOH . C 3 HOH A 116 616 33 HOH HOH . C 3 HOH A 117 617 95 HOH HOH . C 3 HOH A 118 618 56 HOH HOH . C 3 HOH A 119 619 119 HOH HOH . C 3 HOH A 120 620 107 HOH HOH . C 3 HOH A 121 621 123 HOH HOH . C 3 HOH A 122 622 85 HOH HOH . C 3 HOH A 123 623 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 A1B21 . . . B 2 73.718 -46.281 1.939 1 31.6 ? C6 A1B21 401 A 1 HETATM 2 C C7 A1B21 . . . B 2 75.244 -45.679 3.838 1 25.35 ? C7 A1B21 401 A 1 HETATM 3 C C8 A1B21 . . . B 2 73.749 -43.941 2.867 1 22.4 ? C8 A1B21 401 A 1 HETATM 4 C C9 A1B21 . . . B 2 74.613 -45.173 2.52 1 30.53 ? C9 A1B21 401 A 1 HETATM 5 C C10 A1B21 . . . B 2 75.791 -44.756 1.568 1 28.25 ? C10 A1B21 401 A 1 HETATM 6 C C12 A1B21 . . . B 2 76.647 -43.528 1.957 1 29.44 ? C12 A1B21 401 A 1 HETATM 7 C C13 A1B21 . . . B 2 76.537 -40.365 2.163 1 27.87 ? C13 A1B21 401 A 1 HETATM 8 C C14 A1B21 . . . B 2 77.317 -41.276 1.212 1 23.28 ? C14 A1B21 401 A 1 HETATM 9 C C16 A1B21 . . . B 2 76.866 -39.536 4.472 1 20.76 ? C16 A1B21 401 A 1 HETATM 10 C C17 A1B21 . . . B 2 77.268 -38.121 4.87 1 23.84 ? C17 A1B21 401 A 1 HETATM 11 C C18 A1B21 . . . B 2 77.528 -40.601 5.361 1 23.33 ? C18 A1B21 401 A 1 HETATM 12 C C20 A1B21 . . . B 2 76.799 -41.837 5.601 1 26.29 ? C20 A1B21 401 A 1 HETATM 13 C C21 A1B21 . . . B 2 75.252 -41.705 5.918 1 22.47 ? C21 A1B21 401 A 1 HETATM 14 C C22 A1B21 . . . B 2 74.879 -42.883 6.844 1 23.86 ? C22 A1B21 401 A 1 HETATM 15 C C24 A1B21 . . . B 2 77.237 -42.803 6.716 1 21.68 ? C24 A1B21 401 A 1 HETATM 16 C C26 A1B21 . . . B 2 77.829 -38.323 -2.039 1 30.73 ? C26 A1B21 401 A 1 HETATM 17 C C27 A1B21 . . . B 2 76.853 -39.497 -2.257 1 28.91 ? C27 A1B21 401 A 1 HETATM 18 C C28 A1B21 . . . B 2 77.539 -40.568 -3.128 1 34.18 ? C28 A1B21 401 A 1 HETATM 19 C C29 A1B21 . . . B 2 78.798 -41.088 -2.404 1 31.67 ? C29 A1B21 401 A 1 HETATM 20 C C3 A1B21 . . . B 2 77.005 -46.112 -0.144 1 33.91 ? C3 A1B21 401 A 1 HETATM 21 C C30 A1B21 . . . B 2 79.78 -39.922 -2.174 1 24.74 ? C30 A1B21 401 A 1 HETATM 22 C C31 A1B21 . . . B 2 79.094 -38.838 -1.32 1 27.14 ? C31 A1B21 401 A 1 HETATM 23 C C32 A1B21 . . . B 2 76.464 -40.105 -0.889 1 26.58 ? C32 A1B21 401 A 1 HETATM 24 C C33 A1B21 . . . B 2 77.724 -40.622 -0.146 1 25.52 ? C33 A1B21 401 A 1 HETATM 25 C C34 A1B21 . . . B 2 78.399 -41.689 -1.042 1 29.26 ? C34 A1B21 401 A 1 HETATM 26 C C35 A1B21 . . . B 2 78.701 -39.435 0.047 1 23.25 ? C35 A1B21 401 A 1 HETATM 27 C C36 A1B21 . . . B 2 78.924 -47.016 -1.65 1 35.6 ? C36 A1B21 401 A 1 HETATM 28 C C37 A1B21 . . . B 2 80.25 -47.663 -1.219 1 30.57 ? C37 A1B21 401 A 1 HETATM 29 C C38 A1B21 . . . B 2 78.163 -48.006 -2.551 1 31.28 ? C38 A1B21 401 A 1 HETATM 30 C C39 A1B21 . . . B 2 79.222 -45.7 -2.394 1 31.87 ? C39 A1B21 401 A 1 HETATM 31 N N11 A1B21 . . . B 2 76.66 -45.855 1.15 1 25.25 ? N11 A1B21 401 A 1 HETATM 32 N N15 A1B21 . . . B 2 77.273 -39.722 3.085 1 23.71 ? N15 A1B21 401 A 1 HETATM 33 N N2 A1B21 . . . B 2 78.183 -46.764 -0.387 1 24.61 ? N2 A1B21 401 A 1 HETATM 34 N N23 A1B21 . . . B 2 76.191 -43.367 7.297 1 22.56 ? N23 A1B21 401 A 1 HETATM 35 N N4 A1B21 . . . B 2 76.524 -42.491 1.107 1 25.73 ? N4 A1B21 401 A 1 HETATM 36 N N40 A1B21 . . . B 2 76.384 -37.289 5.255 1 27.62 ? N40 A1B21 401 A 1 HETATM 37 O O1 A1B21 . . . B 2 76.278 -45.767 -1.104 1 30.89 ? O1 A1B21 401 A 1 HETATM 38 O O19 A1B21 . . . B 2 75.311 -40.24 2.082 1 28.42 ? O19 A1B21 401 A 1 HETATM 39 O O25 A1B21 . . . B 2 78.426 -42.894 6.953 1 22.76 ? O25 A1B21 401 A 1 HETATM 40 O O5 A1B21 . . . B 2 77.394 -43.483 2.949 1 24.22 ? O5 A1B21 401 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #