data_9NSY # _model_server_result.job_id wUNFoTa7CGzMAgpmxMtmVQ _model_server_result.datetime_utc '2025-08-22 07:13:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9NSY # _exptl.entry_id 9NSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NSY _cell.length_a 82.467 _cell.length_b 82.467 _cell.length_c 84.426 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 79 A SER 79 1_555 B C7 Y33 . A Y33 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A OG SER 79 A SER 79 1_555 B C7 Y33 . A Y33 301 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.429 ? covale ? covale3 A C PHE 81 A PHE 81 1_555 A N KCX 82 A KCX 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A N KCX 82 A KCX 82 1_555 A CA LYS 82 A LYS 82 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.463 ? covale ? covale5 A C KCX 82 A KCX 82 1_555 A CA LYS 82 A LYS 82 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.53 ? covale ? covale6 A C KCX 82 A KCX 82 1_555 A N MET 83 A MET 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C17 H27 N3 O6 S' _chem_comp.formula_weight 401.478 _chem_comp.id Y33 _chem_comp.mon_nstd_flag . _chem_comp.name '(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C31 Y33 doub 406 n n C31 O32 Y33 sing 407 n n C31 C3 Y33 sing 408 n n C7 O7 Y33 doub 409 n n C7 C6 Y33 sing 410 n n N4 C3 Y33 sing 411 n n N4 C5 Y33 sing 412 n n C3 C2 Y33 doub 413 n n C26 C5 Y33 sing 414 n n C5 C6 Y33 sing 415 n n C5 C1 Y33 sing 416 n n C6 C61 Y33 sing 417 n n C62 C61 Y33 sing 418 n n C61 O62 Y33 sing 419 n n C2 C1 Y33 sing 420 n n C2 S21 Y33 sing 421 n n N3A C2A Y33 sing 422 n n N3A C5A Y33 sing 423 n n O6A C6A Y33 doub 424 n n C2A C1A Y33 sing 425 n n S21 C1A Y33 sing 426 n n C6A C5A Y33 sing 427 n n C6A N7A Y33 sing 428 n n C5A C4A Y33 sing 429 n n C1A C4A Y33 sing 430 n n C8A N7A Y33 sing 431 n n N7A C9A Y33 sing 432 n n C1 H1 Y33 sing 433 n n C1 H2 Y33 sing 434 n n N4 H5 Y33 sing 435 n n C6 H7 Y33 sing 436 n n C26 H9 Y33 sing 437 n n C26 H10 Y33 sing 438 n n C26 H11 Y33 sing 439 n n C61 H12 Y33 sing 440 n n C62 H13 Y33 sing 441 n n C62 H14 Y33 sing 442 n n C62 H15 Y33 sing 443 n n O32 H16 Y33 sing 444 n n O62 H17 Y33 sing 445 n n C1A H18 Y33 sing 446 n n C2A H19 Y33 sing 447 n n C2A H20 Y33 sing 448 n n C4A H21 Y33 sing 449 n n C4A H22 Y33 sing 450 n n C5A H23 Y33 sing 451 n n C8A H24 Y33 sing 452 n n C8A H25 Y33 sing 453 n n C8A H26 Y33 sing 454 n n C9A H27 Y33 sing 455 n n C9A H28 Y33 sing 456 n n C9A H29 Y33 sing 457 n n N3A H30 Y33 sing 458 n n C7 O7A Y33 sing 459 n n O7A H8 Y33 sing 460 n n # _atom_sites.entry_id 9NSY _atom_sites.fract_transf_matrix[1][1] 0.012126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y33 A 1 301 301 Y33 CP4 . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 5 HOH HOH . D 4 HOH A 2 402 103 HOH HOH . D 4 HOH A 3 403 95 HOH HOH . D 4 HOH A 4 404 56 HOH HOH . D 4 HOH A 5 405 48 HOH HOH . D 4 HOH A 6 406 73 HOH HOH . D 4 HOH A 7 407 46 HOH HOH . D 4 HOH A 8 408 68 HOH HOH . D 4 HOH A 9 409 53 HOH HOH . D 4 HOH A 10 410 33 HOH HOH . D 4 HOH A 11 411 8 HOH HOH . D 4 HOH A 12 412 77 HOH HOH . D 4 HOH A 13 413 18 HOH HOH . D 4 HOH A 14 414 88 HOH HOH . D 4 HOH A 15 415 42 HOH HOH . D 4 HOH A 16 416 11 HOH HOH . D 4 HOH A 17 417 16 HOH HOH . D 4 HOH A 18 418 71 HOH HOH . D 4 HOH A 19 419 36 HOH HOH . D 4 HOH A 20 420 74 HOH HOH . D 4 HOH A 21 421 10 HOH HOH . D 4 HOH A 22 422 25 HOH HOH . D 4 HOH A 23 423 35 HOH HOH . D 4 HOH A 24 424 1 HOH HOH . D 4 HOH A 25 425 49 HOH HOH . D 4 HOH A 26 426 23 HOH HOH . D 4 HOH A 27 427 67 HOH HOH . D 4 HOH A 28 428 4 HOH HOH . D 4 HOH A 29 429 72 HOH HOH . D 4 HOH A 30 430 54 HOH HOH . D 4 HOH A 31 431 51 HOH HOH . D 4 HOH A 32 432 64 HOH HOH . D 4 HOH A 33 433 70 HOH HOH . D 4 HOH A 34 434 15 HOH HOH . D 4 HOH A 35 435 14 HOH HOH . D 4 HOH A 36 436 55 HOH HOH . D 4 HOH A 37 437 63 HOH HOH . D 4 HOH A 38 438 92 HOH HOH . D 4 HOH A 39 439 9 HOH HOH . D 4 HOH A 40 440 82 HOH HOH . D 4 HOH A 41 441 21 HOH HOH . D 4 HOH A 42 442 13 HOH HOH . D 4 HOH A 43 443 93 HOH HOH . D 4 HOH A 44 444 41 HOH HOH . D 4 HOH A 45 445 7 HOH HOH . D 4 HOH A 46 446 98 HOH HOH . D 4 HOH A 47 447 20 HOH HOH . D 4 HOH A 48 448 96 HOH HOH . D 4 HOH A 49 449 94 HOH HOH . D 4 HOH A 50 450 32 HOH HOH . D 4 HOH A 51 451 100 HOH HOH . D 4 HOH A 52 452 79 HOH HOH . D 4 HOH A 53 453 62 HOH HOH . D 4 HOH A 54 454 89 HOH HOH . D 4 HOH A 55 455 30 HOH HOH . D 4 HOH A 56 456 91 HOH HOH . D 4 HOH A 57 457 59 HOH HOH . D 4 HOH A 58 458 38 HOH HOH . D 4 HOH A 59 459 27 HOH HOH . D 4 HOH A 60 460 52 HOH HOH . D 4 HOH A 61 461 69 HOH HOH . D 4 HOH A 62 462 40 HOH HOH . D 4 HOH A 63 463 29 HOH HOH . D 4 HOH A 64 464 44 HOH HOH . D 4 HOH A 65 465 60 HOH HOH . D 4 HOH A 66 466 2 HOH HOH . D 4 HOH A 67 467 47 HOH HOH . D 4 HOH A 68 468 66 HOH HOH . D 4 HOH A 69 469 39 HOH HOH . D 4 HOH A 70 470 102 HOH HOH . D 4 HOH A 71 471 45 HOH HOH . D 4 HOH A 72 472 80 HOH HOH . D 4 HOH A 73 473 90 HOH HOH . D 4 HOH A 74 474 58 HOH HOH . D 4 HOH A 75 475 83 HOH HOH . D 4 HOH A 76 476 28 HOH HOH . D 4 HOH A 77 477 24 HOH HOH . D 4 HOH A 78 478 81 HOH HOH . D 4 HOH A 79 479 65 HOH HOH . D 4 HOH A 80 480 26 HOH HOH . D 4 HOH A 81 481 85 HOH HOH . D 4 HOH A 82 482 87 HOH HOH . D 4 HOH A 83 483 101 HOH HOH . D 4 HOH A 84 484 97 HOH HOH . D 4 HOH A 85 485 78 HOH HOH . D 4 HOH A 86 486 12 HOH HOH . D 4 HOH A 87 487 17 HOH HOH . D 4 HOH A 88 488 3 HOH HOH . D 4 HOH A 89 489 61 HOH HOH . D 4 HOH A 90 490 19 HOH HOH . D 4 HOH A 91 491 104 HOH HOH . D 4 HOH A 92 492 86 HOH HOH . D 4 HOH A 93 493 84 HOH HOH . D 4 HOH A 94 494 50 HOH HOH . D 4 HOH A 95 495 99 HOH HOH . D 4 HOH A 96 496 75 HOH HOH . D 4 HOH A 97 497 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y33 . A . B 2 22.025 7.391 28.312 0.42 34.33 ? C1 Y33 301 A 1 HETATM 2 C C1 Y33 . B . B 2 22.27 7.938 27.895 0.58 34.22 ? C1 Y33 301 A 1 HETATM 3 C C2 Y33 . A . B 2 23.162 6.798 29.111 0.42 35.26 ? C2 Y33 301 A 1 HETATM 4 C C2 Y33 . B . B 2 22.638 7.174 29.143 0.58 35.19 ? C2 Y33 301 A 1 HETATM 5 C C3 Y33 . A . B 2 23.701 5.773 28.458 0.42 33.9 ? C3 Y33 301 A 1 HETATM 6 C C3 Y33 . B . B 2 23.303 6.065 28.822 0.58 34.38 ? C3 Y33 301 A 1 HETATM 7 N N4 Y33 . A . B 2 23.191 5.659 27.246 0.42 33.03 ? N4 Y33 301 A 1 HETATM 8 N N4 Y33 . B . B 2 23.428 5.93 27.515 0.58 33.65 ? N4 Y33 301 A 1 HETATM 9 C C5 Y33 . A . B 2 22.276 6.736 26.947 0.42 33.1 ? C5 Y33 301 A 1 HETATM 10 C C5 Y33 . B . B 2 22.658 6.926 26.808 0.58 33.01 ? C5 Y33 301 A 1 HETATM 11 C C6 Y33 . A . B 2 21.02 6.109 26.366 0.42 31.5 ? C6 Y33 301 A 1 HETATM 12 C C6 Y33 . B . B 2 21.429 6.184 26.306 0.58 31.62 ? C6 Y33 301 A 1 HETATM 13 C C7 Y33 . A . B 2 21.423 4.883 25.577 0.42 31.03 ? C7 Y33 301 A 1 HETATM 14 C C7 Y33 . B . B 2 21.827 4.774 25.924 0.58 30.95 ? C7 Y33 301 A 1 HETATM 15 C C26 Y33 . A . B 2 22.968 7.694 25.984 0.42 31.19 ? C26 Y33 301 A 1 HETATM 16 C C26 Y33 . B . B 2 23.497 7.541 25.703 0.58 30.4 ? C26 Y33 301 A 1 HETATM 17 C C31 Y33 . A . B 2 24.751 4.873 28.898 0.42 33.18 ? C31 Y33 301 A 1 HETATM 18 C C31 Y33 . B . B 2 23.876 5.08 29.72 0.58 33.26 ? C31 Y33 301 A 1 HETATM 19 C C61 Y33 . A . B 2 20.18 7.036 25.504 0.42 32.08 ? C61 Y33 301 A 1 HETATM 20 C C61 Y33 . B . B 2 20.742 6.833 25.115 0.58 31.34 ? C61 Y33 301 A 1 HETATM 21 C C62 Y33 . A . B 2 18.878 6.329 25.159 0.42 32.81 ? C62 Y33 301 A 1 HETATM 22 C C62 Y33 . B . B 2 19.409 6.139 24.901 0.58 32.03 ? C62 Y33 301 A 1 HETATM 23 O O31 Y33 . A . B 2 25.282 4.186 28.001 0.42 31.65 ? O31 Y33 301 A 1 HETATM 24 O O31 Y33 . B . B 2 24.026 3.922 29.268 0.58 31.42 ? O31 Y33 301 A 1 HETATM 25 O O32 Y33 . A . B 2 25.096 4.811 30.098 0.42 34.89 ? O32 Y33 301 A 1 HETATM 26 O O32 Y33 . B . B 2 24.22 5.416 30.872 0.58 34.27 ? O32 Y33 301 A 1 HETATM 27 O O62 Y33 . A . B 2 19.879 8.228 26.234 0.42 33.75 ? O62 Y33 301 A 1 HETATM 28 O O62 Y33 . B . B 2 20.503 8.219 25.368 0.58 33.44 ? O62 Y33 301 A 1 HETATM 29 O O7 Y33 . A . B 2 21.03 3.836 26.043 0.42 27.68 ? O7 Y33 301 A 1 HETATM 30 O O7 Y33 . B . B 2 21.03 3.892 26.176 0.58 27.59 ? O7 Y33 301 A 1 HETATM 31 C C1A Y33 . A . B 2 24.894 8.652 30.224 0.42 37 ? C1A Y33 301 A 1 HETATM 32 C C1A Y33 . B . B 2 20.852 8.687 30.804 0.58 39.53 ? C1A Y33 301 A 1 HETATM 33 C C2A Y33 . A . B 2 25.158 8.756 28.723 0.42 35.8 ? C2A Y33 301 A 1 HETATM 34 C C2A Y33 . B . B 2 21.22 10.152 30.601 0.58 40.06 ? C2A Y33 301 A 1 HETATM 35 C C4A Y33 . A . B 2 26.269 8.385 30.818 0.42 37.68 ? C4A Y33 301 A 1 HETATM 36 C C4A Y33 . B . B 2 20.28 8.608 32.212 0.58 41.25 ? C4A Y33 301 A 1 HETATM 37 C C5A Y33 . A . B 2 27.142 9.217 29.889 0.42 37.39 ? C5A Y33 301 A 1 HETATM 38 C C5A Y33 . B . B 2 20.352 10.01 32.807 0.58 42.95 ? C5A Y33 301 A 1 HETATM 39 C C6A Y33 . A . B 2 28.588 8.85 29.939 0.42 38.15 ? C6A Y33 301 A 1 HETATM 40 C C6A Y33 . B . B 2 20.89 9.976 34.211 0.58 43.25 ? C6A Y33 301 A 1 HETATM 41 C C8A Y33 . A . B 2 29.481 10.836 28.816 0.42 34.95 ? C8A Y33 301 A 1 HETATM 42 C C8A Y33 . B . B 2 20.464 11.019 36.371 0.58 44.48 ? C8A Y33 301 A 1 HETATM 43 C C9A Y33 . A . B 2 30.435 10.097 30.947 0.42 36.95 ? C9A Y33 301 A 1 HETATM 44 C C9A Y33 . B . B 2 18.649 9.851 35.198 0.58 43.65 ? C9A Y33 301 A 1 HETATM 45 N N3A Y33 . A . B 2 26.601 8.975 28.539 0.42 35.12 ? N3A Y33 301 A 1 HETATM 46 N N3A Y33 . B . B 2 21.267 10.774 31.937 0.58 41.63 ? N3A Y33 301 A 1 HETATM 47 N N7A Y33 . A . B 2 29.45 9.869 29.902 0.42 37.93 ? N7A Y33 301 A 1 HETATM 48 N N7A Y33 . B . B 2 20.046 10.258 35.202 0.58 44.33 ? N7A Y33 301 A 1 HETATM 49 O O6A Y33 . A . B 2 28.92 7.681 29.996 0.42 38.7 ? O6A Y33 301 A 1 HETATM 50 O O6A Y33 . B . B 2 22.058 9.693 34.418 0.58 46.1 ? O6A Y33 301 A 1 HETATM 51 S S21 Y33 . A . B 2 23.686 7.41 30.573 0.42 38.27 ? S21 Y33 301 A 1 HETATM 52 S S21 Y33 . B . B 2 22.287 7.665 30.699 0.58 36.68 ? S21 Y33 301 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 52 #