data_9NSZ # _model_server_result.job_id mOJR2In0lCts48pNBc1D0A _model_server_result.datetime_utc '2025-08-22 07:12:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nsz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9NSZ # _exptl.entry_id 9NSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NSZ _cell.length_a 82.771 _cell.length_b 82.771 _cell.length_c 86.045 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 79 A SER 79 1_555 B C7 Y33 . A Y33 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 A C PHE 81 A PHE 81 1_555 A N KCX 82 A KCX 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A N KCX 82 A KCX 82 1_555 A CA LYS 82 A LYS 82 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.472 ? covale ? covale4 A C KCX 82 A KCX 82 1_555 A CA LYS 82 A LYS 82 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.53 ? covale ? covale5 A C KCX 82 A KCX 82 1_555 A N MET 83 A MET 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C17 H27 N3 O6 S' _chem_comp.formula_weight 401.478 _chem_comp.id Y33 _chem_comp.mon_nstd_flag . _chem_comp.name '(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C31 Y33 doub 415 n n C31 O32 Y33 sing 416 n n C31 C3 Y33 sing 417 n n C7 O7 Y33 doub 418 n n C7 C6 Y33 sing 419 n n N4 C3 Y33 sing 420 n n N4 C5 Y33 sing 421 n n C3 C2 Y33 doub 422 n n C26 C5 Y33 sing 423 n n C5 C6 Y33 sing 424 n n C5 C1 Y33 sing 425 n n C6 C61 Y33 sing 426 n n C62 C61 Y33 sing 427 n n C61 O62 Y33 sing 428 n n C2 C1 Y33 sing 429 n n C2 S21 Y33 sing 430 n n N3A C2A Y33 sing 431 n n N3A C5A Y33 sing 432 n n O6A C6A Y33 doub 433 n n C2A C1A Y33 sing 434 n n S21 C1A Y33 sing 435 n n C6A C5A Y33 sing 436 n n C6A N7A Y33 sing 437 n n C5A C4A Y33 sing 438 n n C1A C4A Y33 sing 439 n n C8A N7A Y33 sing 440 n n N7A C9A Y33 sing 441 n n C1 H1 Y33 sing 442 n n C1 H2 Y33 sing 443 n n N4 H5 Y33 sing 444 n n C6 H7 Y33 sing 445 n n C26 H9 Y33 sing 446 n n C26 H10 Y33 sing 447 n n C26 H11 Y33 sing 448 n n C61 H12 Y33 sing 449 n n C62 H13 Y33 sing 450 n n C62 H14 Y33 sing 451 n n C62 H15 Y33 sing 452 n n O32 H16 Y33 sing 453 n n O62 H17 Y33 sing 454 n n C1A H18 Y33 sing 455 n n C2A H19 Y33 sing 456 n n C2A H20 Y33 sing 457 n n C4A H21 Y33 sing 458 n n C4A H22 Y33 sing 459 n n C5A H23 Y33 sing 460 n n C8A H24 Y33 sing 461 n n C8A H25 Y33 sing 462 n n C8A H26 Y33 sing 463 n n C9A H27 Y33 sing 464 n n C9A H28 Y33 sing 465 n n C9A H29 Y33 sing 466 n n N3A H30 Y33 sing 467 n n C7 O7A Y33 sing 468 n n O7A H8 Y33 sing 469 n n # _atom_sites.entry_id 9NSZ _atom_sites.fract_transf_matrix[1][1] 0.012082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y33 A 1 301 301 Y33 CP4 . C 3 SO4 A 1 302 302 SO4 SO4 . D 4 EDO A 1 303 303 EDO EDO . E 4 EDO A 1 304 304 EDO EDO . F 5 HOH A 1 401 139 HOH HOH . F 5 HOH A 2 402 122 HOH HOH . F 5 HOH A 3 403 118 HOH HOH . F 5 HOH A 4 404 133 HOH HOH . F 5 HOH A 5 405 149 HOH HOH . F 5 HOH A 6 406 81 HOH HOH . F 5 HOH A 7 407 94 HOH HOH . F 5 HOH A 8 408 73 HOH HOH . F 5 HOH A 9 409 102 HOH HOH . F 5 HOH A 10 410 92 HOH HOH . F 5 HOH A 11 411 82 HOH HOH . F 5 HOH A 12 412 127 HOH HOH . F 5 HOH A 13 413 51 HOH HOH . F 5 HOH A 14 414 155 HOH HOH . F 5 HOH A 15 415 22 HOH HOH . F 5 HOH A 16 416 112 HOH HOH . F 5 HOH A 17 417 77 HOH HOH . F 5 HOH A 18 418 136 HOH HOH . F 5 HOH A 19 419 75 HOH HOH . F 5 HOH A 20 420 90 HOH HOH . F 5 HOH A 21 421 55 HOH HOH . F 5 HOH A 22 422 79 HOH HOH . F 5 HOH A 23 423 121 HOH HOH . F 5 HOH A 24 424 108 HOH HOH . F 5 HOH A 25 425 74 HOH HOH . F 5 HOH A 26 426 39 HOH HOH . F 5 HOH A 27 427 69 HOH HOH . F 5 HOH A 28 428 54 HOH HOH . F 5 HOH A 29 429 7 HOH HOH . F 5 HOH A 30 430 72 HOH HOH . F 5 HOH A 31 431 135 HOH HOH . F 5 HOH A 32 432 10 HOH HOH . F 5 HOH A 33 433 71 HOH HOH . F 5 HOH A 34 434 152 HOH HOH . F 5 HOH A 35 435 57 HOH HOH . F 5 HOH A 36 436 49 HOH HOH . F 5 HOH A 37 437 36 HOH HOH . F 5 HOH A 38 438 95 HOH HOH . F 5 HOH A 39 439 9 HOH HOH . F 5 HOH A 40 440 45 HOH HOH . F 5 HOH A 41 441 58 HOH HOH . F 5 HOH A 42 442 12 HOH HOH . F 5 HOH A 43 443 28 HOH HOH . F 5 HOH A 44 444 138 HOH HOH . F 5 HOH A 45 445 125 HOH HOH . F 5 HOH A 46 446 80 HOH HOH . F 5 HOH A 47 447 86 HOH HOH . F 5 HOH A 48 448 53 HOH HOH . F 5 HOH A 49 449 114 HOH HOH . F 5 HOH A 50 450 37 HOH HOH . F 5 HOH A 51 451 89 HOH HOH . F 5 HOH A 52 452 84 HOH HOH . F 5 HOH A 53 453 23 HOH HOH . F 5 HOH A 54 454 26 HOH HOH . F 5 HOH A 55 455 42 HOH HOH . F 5 HOH A 56 456 68 HOH HOH . F 5 HOH A 57 457 24 HOH HOH . F 5 HOH A 58 458 43 HOH HOH . F 5 HOH A 59 459 5 HOH HOH . F 5 HOH A 60 460 15 HOH HOH . F 5 HOH A 61 461 93 HOH HOH . F 5 HOH A 62 462 20 HOH HOH . F 5 HOH A 63 463 83 HOH HOH . F 5 HOH A 64 464 63 HOH HOH . F 5 HOH A 65 465 105 HOH HOH . F 5 HOH A 66 466 137 HOH HOH . F 5 HOH A 67 467 100 HOH HOH . F 5 HOH A 68 468 70 HOH HOH . F 5 HOH A 69 469 41 HOH HOH . F 5 HOH A 70 470 56 HOH HOH . F 5 HOH A 71 471 106 HOH HOH . F 5 HOH A 72 472 66 HOH HOH . F 5 HOH A 73 473 148 HOH HOH . F 5 HOH A 74 474 123 HOH HOH . F 5 HOH A 75 475 8 HOH HOH . F 5 HOH A 76 476 44 HOH HOH . F 5 HOH A 77 477 116 HOH HOH . F 5 HOH A 78 478 1 HOH HOH . F 5 HOH A 79 479 78 HOH HOH . F 5 HOH A 80 480 3 HOH HOH . F 5 HOH A 81 481 64 HOH HOH . F 5 HOH A 82 482 62 HOH HOH . F 5 HOH A 83 483 96 HOH HOH . F 5 HOH A 84 484 154 HOH HOH . F 5 HOH A 85 485 111 HOH HOH . F 5 HOH A 86 486 11 HOH HOH . F 5 HOH A 87 487 158 HOH HOH . F 5 HOH A 88 488 61 HOH HOH . F 5 HOH A 89 489 4 HOH HOH . F 5 HOH A 90 490 19 HOH HOH . F 5 HOH A 91 491 47 HOH HOH . F 5 HOH A 92 492 159 HOH HOH . F 5 HOH A 93 493 87 HOH HOH . F 5 HOH A 94 494 161 HOH HOH . F 5 HOH A 95 495 147 HOH HOH . F 5 HOH A 96 496 126 HOH HOH . F 5 HOH A 97 497 91 HOH HOH . F 5 HOH A 98 498 65 HOH HOH . F 5 HOH A 99 499 31 HOH HOH . F 5 HOH A 100 500 128 HOH HOH . F 5 HOH A 101 501 99 HOH HOH . F 5 HOH A 102 502 59 HOH HOH . F 5 HOH A 103 503 2 HOH HOH . F 5 HOH A 104 504 18 HOH HOH . F 5 HOH A 105 505 144 HOH HOH . F 5 HOH A 106 506 38 HOH HOH . F 5 HOH A 107 507 76 HOH HOH . F 5 HOH A 108 508 115 HOH HOH . F 5 HOH A 109 509 157 HOH HOH . F 5 HOH A 110 510 33 HOH HOH . F 5 HOH A 111 511 13 HOH HOH . F 5 HOH A 112 512 129 HOH HOH . F 5 HOH A 113 513 156 HOH HOH . F 5 HOH A 114 514 67 HOH HOH . F 5 HOH A 115 515 162 HOH HOH . F 5 HOH A 116 516 34 HOH HOH . F 5 HOH A 117 517 32 HOH HOH . F 5 HOH A 118 518 117 HOH HOH . F 5 HOH A 119 519 110 HOH HOH . F 5 HOH A 120 520 132 HOH HOH . F 5 HOH A 121 521 120 HOH HOH . F 5 HOH A 122 522 107 HOH HOH . F 5 HOH A 123 523 48 HOH HOH . F 5 HOH A 124 524 109 HOH HOH . F 5 HOH A 125 525 160 HOH HOH . F 5 HOH A 126 526 134 HOH HOH . F 5 HOH A 127 527 140 HOH HOH . F 5 HOH A 128 528 146 HOH HOH . F 5 HOH A 129 529 141 HOH HOH . F 5 HOH A 130 530 35 HOH HOH . F 5 HOH A 131 531 142 HOH HOH . F 5 HOH A 132 532 101 HOH HOH . F 5 HOH A 133 533 131 HOH HOH . F 5 HOH A 134 534 98 HOH HOH . F 5 HOH A 135 535 143 HOH HOH . F 5 HOH A 136 536 88 HOH HOH . F 5 HOH A 137 537 113 HOH HOH . F 5 HOH A 138 538 164 HOH HOH . F 5 HOH A 139 539 103 HOH HOH . F 5 HOH A 140 540 130 HOH HOH . F 5 HOH A 141 541 124 HOH HOH . F 5 HOH A 142 542 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y33 . . . B 2 7.647 -22.276 -14.447 0.92 26.97 ? C1 Y33 301 A 1 HETATM 2 C C2 Y33 . . . B 2 6.929 -22.81 -13.228 0.92 32.33 ? C2 Y33 301 A 1 HETATM 3 C C3 Y33 . . . B 2 5.815 -23.442 -13.574 0.92 29.23 ? C3 Y33 301 A 1 HETATM 4 N N4 Y33 . . . B 2 5.639 -23.384 -14.891 0.92 28.37 ? N4 Y33 301 A 1 HETATM 5 C C5 Y33 . . . B 2 6.659 -22.604 -15.572 0.92 27.16 ? C5 Y33 301 A 1 HETATM 6 C C6 Y33 . . . B 2 6.011 -21.337 -16.137 0.92 21.11 ? C6 Y33 301 A 1 HETATM 7 C C7 Y33 . . . B 2 4.597 -21.679 -16.576 0.92 22.33 ? C7 Y33 301 A 1 HETATM 8 C C26 Y33 . . . B 2 7.312 -23.47 -16.646 0.92 27.67 ? C26 Y33 301 A 1 HETATM 9 C C31 Y33 . . . B 2 4.859 -24.088 -12.673 0.92 36.22 ? C31 Y33 301 A 1 HETATM 10 C C61 Y33 . . . B 2 6.763 -20.761 -17.323 0.92 25.39 ? C61 Y33 301 A 1 HETATM 11 C C62 Y33 . . . B 2 6.01 -19.575 -17.874 0.92 24.72 ? C62 Y33 301 A 1 HETATM 12 O O31 Y33 . . . B 2 3.669 -24.171 -13.039 0.92 36.92 ? O31 Y33 301 A 1 HETATM 13 O O32 Y33 . . . B 2 5.211 -24.53 -11.559 0.92 35.74 ? O32 Y33 301 A 1 HETATM 14 O O62 Y33 . . . B 2 8.049 -20.304 -16.878 0.92 28.46 ? O62 Y33 301 A 1 HETATM 15 O O7 Y33 . . . B 2 3.668 -21.047 -16.106 0.92 23.56 ? O7 Y33 301 A 1 HETATM 16 C C1A Y33 . . . B 2 8.501 -21.138 -11.678 0.92 47.34 ? C1A Y33 301 A 1 HETATM 17 C C2A Y33 . . . B 2 9.969 -21.52 -11.872 0.92 44.05 ? C2A Y33 301 A 1 HETATM 18 C C4A Y33 . . . B 2 8.422 -20.398 -10.351 0.92 45.94 ? C4A Y33 301 A 1 HETATM 19 C C5A Y33 . . . B 2 9.834 -20.388 -9.781 0.92 53.31 ? C5A Y33 301 A 1 HETATM 20 C C6A Y33 . . . B 2 9.893 -21.396 -8.669 0.92 58.67 ? C6A Y33 301 A 1 HETATM 21 C C8A Y33 . . . B 2 9.396 -21.774 -6.303 0.92 49.34 ? C8A Y33 301 A 1 HETATM 22 C C9A Y33 . . . B 2 9.877 -19.496 -7.122 0.92 45.92 ? C9A Y33 301 A 1 HETATM 23 N N3A Y33 . . . B 2 10.745 -20.74 -10.891 0.92 53.09 ? N3A Y33 301 A 1 HETATM 24 N N7A Y33 . . . B 2 9.737 -20.916 -7.431 0.92 55.95 ? N7A Y33 301 A 1 HETATM 25 O O6A Y33 . . . B 2 10.054 -22.586 -8.911 0.92 62.06 ? O6A Y33 301 A 1 HETATM 26 S S21 Y33 . . . B 2 7.482 -22.586 -11.665 0.92 40.69 ? S21 Y33 301 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #