data_9NT4
#
_model_server_result.job_id            pJK243UZOUjdNObmsKNMIw 
_model_server_result.datetime_utc      '2025-06-25 01:52:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9nt4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
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_entry.id    9NT4 
#
_exptl.entry_id    9NT4 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              164.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-fucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.51 
_cell.angle_gamma         90 
_cell.entry_id            9NT4 
_cell.length_a            63.446 
_cell.length_b            210.997 
_cell.length_c            87.315 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9NT4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H,I,P,Q,X 1 1 
B,F,J,N,R,V 2 1 
C,E,K,M,S,U 3 1 
D,G,L,O,T,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C6 H12 O5' 
_chem_comp.formula_weight    164.156 
_chem_comp.id                FCB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-fucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-fucose;6-deoxy-beta-D-galactopyranose;D-fucose;fucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 FCB sing 70 n n 
C1 O1 FCB sing 71 n n 
C1 O5 FCB sing 72 n n 
C1 H1 FCB sing 73 n n 
C2 C3 FCB sing 74 n n 
C2 O2 FCB sing 75 n n 
C2 H2 FCB sing 76 n n 
C3 C4 FCB sing 77 n n 
C3 O3 FCB sing 78 n n 
C3 H3 FCB sing 79 n n 
C4 C5 FCB sing 80 n n 
C4 O4 FCB sing 81 n n 
C4 H4 FCB sing 82 n n 
C5 C6 FCB sing 83 n n 
C5 O5 FCB sing 84 n n 
C5 H5 FCB sing 85 n n 
C6 H61 FCB sing 86 n n 
C6 H62 FCB sing 87 n n 
C6 H63 FCB sing 88 n n 
O1 HO1 FCB sing 89 n n 
O2 HO2 FCB sing 90 n n 
O3 HO3 FCB sing 91 n n 
O4 HO4 FCB sing 92 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
FCB DFucpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
FCB b-D-fucopyranose 'COMMON NAME' GMML 1 
FCB b-D-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
FCB Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9NT4 
_atom_sites.fract_transf_matrix[1][1]    0.015761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00014 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FCB A 1 501 501 FCB FCB . 
J 2 FCB B 1 501 501 FCB FCB . 
K 2 FCB C 1 501 501 FCB FCB . 
L 2 FCB D 1 501 501 FCB FCB . 
M 2 FCB E 1 501 501 FCB FCB . 
N 2 FCB F 1 501 501 FCB FCB . 
O 2 FCB G 1 501 501 FCB FCB . 
P 2 FCB H 1 501 501 FCB FCB . 
Q 3 HOH A 1 601 42 HOH HOH . 
Q 3 HOH A 2 602 22 HOH HOH . 
Q 3 HOH A 3 603 35 HOH HOH . 
Q 3 HOH A 4 604 36 HOH HOH . 
Q 3 HOH A 5 605 37 HOH HOH . 
Q 3 HOH A 6 606 78 HOH HOH . 
Q 3 HOH A 7 607 71 HOH HOH . 
Q 3 HOH A 8 608 5 HOH HOH . 
Q 3 HOH A 9 609 74 HOH HOH . 
R 3 HOH B 1 601 72 HOH HOH . 
R 3 HOH B 2 602 66 HOH HOH . 
R 3 HOH B 3 603 80 HOH HOH . 
R 3 HOH B 4 604 32 HOH HOH . 
R 3 HOH B 5 605 75 HOH HOH . 
R 3 HOH B 6 606 33 HOH HOH . 
R 3 HOH B 7 607 17 HOH HOH . 
R 3 HOH B 8 608 30 HOH HOH . 
R 3 HOH B 9 609 56 HOH HOH . 
R 3 HOH B 10 610 64 HOH HOH . 
R 3 HOH B 11 611 65 HOH HOH . 
R 3 HOH B 12 612 12 HOH HOH . 
R 3 HOH B 13 613 4 HOH HOH . 
R 3 HOH B 14 614 61 HOH HOH . 
R 3 HOH B 15 615 3 HOH HOH . 
R 3 HOH B 16 616 73 HOH HOH . 
S 3 HOH C 1 601 29 HOH HOH . 
S 3 HOH C 2 602 52 HOH HOH . 
S 3 HOH C 3 603 79 HOH HOH . 
S 3 HOH C 4 604 18 HOH HOH . 
S 3 HOH C 5 605 9 HOH HOH . 
S 3 HOH C 6 606 1 HOH HOH . 
T 3 HOH D 1 601 67 HOH HOH . 
T 3 HOH D 2 602 31 HOH HOH . 
T 3 HOH D 3 603 83 HOH HOH . 
T 3 HOH D 4 604 51 HOH HOH . 
T 3 HOH D 5 605 68 HOH HOH . 
T 3 HOH D 6 606 48 HOH HOH . 
T 3 HOH D 7 607 2 HOH HOH . 
U 3 HOH E 1 601 15 HOH HOH . 
U 3 HOH E 2 602 60 HOH HOH . 
U 3 HOH E 3 603 81 HOH HOH . 
U 3 HOH E 4 604 53 HOH HOH . 
U 3 HOH E 5 605 6 HOH HOH . 
U 3 HOH E 6 606 43 HOH HOH . 
V 3 HOH F 1 601 27 HOH HOH . 
V 3 HOH F 2 602 77 HOH HOH . 
V 3 HOH F 3 603 50 HOH HOH . 
V 3 HOH F 4 604 28 HOH HOH . 
V 3 HOH F 5 605 39 HOH HOH . 
V 3 HOH F 6 606 26 HOH HOH . 
V 3 HOH F 7 607 62 HOH HOH . 
V 3 HOH F 8 608 11 HOH HOH . 
W 3 HOH G 1 601 63 HOH HOH . 
W 3 HOH G 2 602 23 HOH HOH . 
W 3 HOH G 3 603 58 HOH HOH . 
W 3 HOH G 4 604 7 HOH HOH . 
X 3 HOH H 1 601 82 HOH HOH . 
X 3 HOH H 2 602 34 HOH HOH . 
X 3 HOH H 3 603 25 HOH HOH . 
X 3 HOH H 4 604 45 HOH HOH . 
X 3 HOH H 5 605 38 HOH HOH . 
X 3 HOH H 6 606 14 HOH HOH . 
X 3 HOH H 7 607 16 HOH HOH . 
X 3 HOH H 8 608 76 HOH HOH . 
X 3 HOH H 9 609 13 HOH HOH . 
X 3 HOH H 10 610 59 HOH HOH . 
X 3 HOH H 11 611 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FCB . . . J 2 -3.834 0.87 28.627 1 50.43 ? C1 FCB 501 B 1 
HETATM 2 C C2 FCB . . . J 2 -3.47 0.351 27.244 1 45.3 ? C2 FCB 501 B 1 
HETATM 3 C C3 FCB . . . J 2 -3.463 -1.139 27.233 1 38.85 ? C3 FCB 501 B 1 
HETATM 4 C C4 FCB . . . J 2 -2.508 -1.727 28.243 1 37.98 ? C4 FCB 501 B 1 
HETATM 5 C C5 FCB . . . J 2 -2.712 -1.155 29.65 1 42.34 ? C5 FCB 501 B 1 
HETATM 6 C C6 FCB . . . J 2 -1.454 -1.4 30.429 1 35.98 ? C6 FCB 501 B 1 
HETATM 7 O O1 FCB . . . J 2 -3.709 2.233 28.626 1 49.17 ? O1 FCB 501 B 1 
HETATM 8 O O2 FCB . . . J 2 -4.397 0.912 26.276 1 38.44 ? O2 FCB 501 B 1 
HETATM 9 O O3 FCB . . . J 2 -3.12 -1.609 25.903 1 35.16 ? O3 FCB 501 B 1 
HETATM 10 O O4 FCB . . . J 2 -1.133 -1.54 27.875 1 32.52 ? O4 FCB 501 B 1 
HETATM 11 O O5 FCB . . . J 2 -2.944 0.296 29.699 1 51.87 ? O5 FCB 501 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           11 
#