data_9NTJ
#
_model_server_result.job_id            AcndEjicoLHS4X9IZ-Rh5A 
_model_server_result.datetime_utc      '2025-07-18 01:04:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ntj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":607}' 
#
_entry.id    9NTJ 
#
_exptl.entry_id    9NTJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9NTJ 
_cell.length_a            67.349 
_cell.length_b            109.609 
_cell.length_c            171.555 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9NTJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 728 NAG 
2 n C NAG 2 C 2 NAG A 729 NAG 
2 n C BMA 3 C 3 BMA A 730 BMA 
2 n C MAN 4 C 4 MAN A 731 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 142 A CYS 142 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 B SG CYS 142 B CYS 142 1_555 B SG CYS 164 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 81 A ASN 81 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A ND2 ASN 132 A ASN 132 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 189 A ASN 189 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 A ND2 ASN 384 A ASN 384 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 B ND2 ASN 81 B ASN 81 1_555 M C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 B ND2 ASN 132 B ASN 132 1_555 L C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale7 B ND2 ASN 189 B ASN 189 1_555 N C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale8 B ND2 ASN 384 B ASN 384 1_555 O C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale10 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale11 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
metalc ? metalc1 A NE2 HIS 117 A HIS 117 1_555 J ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc2 A NE2 HIS 119 A HIS 119 1_555 J ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc3 A NE2 HIS 362 A HIS 362 1_555 J ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc4 A OD1 ASP 447 A ASP 447 1_555 J ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc5 J ZN ZN . A ZN 607 1_555 K O8 DCF . A DCF 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc6 B NE2 HIS 117 B HIS 117 1_555 S ZN ZN . B ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc7 B NE2 HIS 119 B HIS 119 1_555 S ZN ZN . B ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc8 B NE2 HIS 362 B HIS 362 1_555 S ZN ZN . B ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc9 B OD1 ASP 447 B ASP 447 1_555 S ZN ZN . B ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc10 S ZN ZN . B ZN 608 1_555 T O8 DCF . B DCF 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 144 n n 
C1 C2 EDO sing 145 n n 
C1 H11 EDO sing 146 n n 
C1 H12 EDO sing 147 n n 
O1 HO1 EDO sing 148 n n 
C2 O2 EDO sing 149 n n 
C2 H21 EDO sing 150 n n 
C2 H22 EDO sing 151 n n 
O2 HO2 EDO sing 152 n n 
#
_atom_sites.entry_id                     9NTJ 
_atom_sites.fract_transf_matrix[1][1]    0.014848 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005829 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAG A 1 601 725 NAG NAG . 
E 3 NAG A 1 602 726 NAG NAG . 
F 3 NAG A 1 603 727 NAG NAG . 
G 4 EDO A 1 604 825 EDO EDO . 
H 4 EDO A 1 605 925 EDO EDO . 
I 4 EDO A 1 606 1025 EDO EDO . 
J 5 ZN A 1 607 2 ZN ZN . 
K 6 DCF A 1 608 1 DCF DCF . 
L 3 NAG B 1 601 725 NAG NAG . 
M 3 NAG B 1 602 726 NAG NAG . 
N 3 NAG B 1 603 727 NAG NAG . 
O 3 NAG B 1 604 728 NAG NAG . 
P 4 EDO B 1 605 825 EDO EDO . 
Q 4 EDO B 1 606 925 EDO EDO . 
R 4 EDO B 1 607 1025 EDO EDO . 
S 5 ZN B 1 608 1 ZN ZN . 
T 6 DCF B 1 609 2 DCF DCF . 
U 7 HOH A 1 701 175 HOH HOH . 
U 7 HOH A 2 702 158 HOH HOH . 
U 7 HOH A 3 703 141 HOH HOH . 
U 7 HOH A 4 704 176 HOH HOH . 
U 7 HOH A 5 705 17 HOH HOH . 
U 7 HOH A 6 706 144 HOH HOH . 
U 7 HOH A 7 707 182 HOH HOH . 
U 7 HOH A 8 708 152 HOH HOH . 
U 7 HOH A 9 709 69 HOH HOH . 
U 7 HOH A 10 710 55 HOH HOH . 
U 7 HOH A 11 711 68 HOH HOH . 
U 7 HOH A 12 712 31 HOH HOH . 
U 7 HOH A 13 713 51 HOH HOH . 
U 7 HOH A 14 714 74 HOH HOH . 
U 7 HOH A 15 715 46 HOH HOH . 
U 7 HOH A 16 716 61 HOH HOH . 
U 7 HOH A 17 717 3 HOH HOH . 
U 7 HOH A 18 718 54 HOH HOH . 
U 7 HOH A 19 719 156 HOH HOH . 
U 7 HOH A 20 720 131 HOH HOH . 
U 7 HOH A 21 721 155 HOH HOH . 
U 7 HOH A 22 722 164 HOH HOH . 
U 7 HOH A 23 723 40 HOH HOH . 
U 7 HOH A 24 724 181 HOH HOH . 
U 7 HOH A 25 725 159 HOH HOH . 
U 7 HOH A 26 726 5 HOH HOH . 
U 7 HOH A 27 727 168 HOH HOH . 
U 7 HOH A 28 728 95 HOH HOH . 
U 7 HOH A 29 729 96 HOH HOH . 
U 7 HOH A 30 730 171 HOH HOH . 
U 7 HOH A 31 731 44 HOH HOH . 
U 7 HOH A 32 732 128 HOH HOH . 
U 7 HOH A 33 733 177 HOH HOH . 
U 7 HOH A 34 734 178 HOH HOH . 
U 7 HOH A 35 735 12 HOH HOH . 
U 7 HOH A 36 736 120 HOH HOH . 
U 7 HOH A 37 737 183 HOH HOH . 
U 7 HOH A 38 738 83 HOH HOH . 
U 7 HOH A 39 739 170 HOH HOH . 
U 7 HOH A 40 740 92 HOH HOH . 
V 7 HOH B 1 701 107 HOH HOH . 
V 7 HOH B 2 702 150 HOH HOH . 
V 7 HOH B 3 703 103 HOH HOH . 
V 7 HOH B 4 704 99 HOH HOH . 
V 7 HOH B 5 705 173 HOH HOH . 
V 7 HOH B 6 706 72 HOH HOH . 
V 7 HOH B 7 707 41 HOH HOH . 
V 7 HOH B 8 708 109 HOH HOH . 
V 7 HOH B 9 709 35 HOH HOH . 
V 7 HOH B 10 710 66 HOH HOH . 
V 7 HOH B 11 711 122 HOH HOH . 
V 7 HOH B 12 712 43 HOH HOH . 
V 7 HOH B 13 713 76 HOH HOH . 
V 7 HOH B 14 714 174 HOH HOH . 
V 7 HOH B 15 715 172 HOH HOH . 
V 7 HOH B 16 716 102 HOH HOH . 
V 7 HOH B 17 717 13 HOH HOH . 
V 7 HOH B 18 718 39 HOH HOH . 
V 7 HOH B 19 719 134 HOH HOH . 
V 7 HOH B 20 720 165 HOH HOH . 
V 7 HOH B 21 721 86 HOH HOH . 
V 7 HOH B 22 722 48 HOH HOH . 
V 7 HOH B 23 723 71 HOH HOH . 
V 7 HOH B 24 724 130 HOH HOH . 
V 7 HOH B 25 725 104 HOH HOH . 
V 7 HOH B 26 726 114 HOH HOH . 
V 7 HOH B 27 727 146 HOH HOH . 
V 7 HOH B 28 728 33 HOH HOH . 
V 7 HOH B 29 729 115 HOH HOH . 
V 7 HOH B 30 730 180 HOH HOH . 
V 7 HOH B 31 731 124 HOH HOH . 
V 7 HOH B 32 732 137 HOH HOH . 
V 7 HOH B 33 733 6 HOH HOH . 
V 7 HOH B 34 734 94 HOH HOH . 
V 7 HOH B 35 735 87 HOH HOH . 
V 7 HOH B 36 736 138 HOH HOH . 
V 7 HOH B 37 737 179 HOH HOH . 
V 7 HOH B 38 738 45 HOH HOH . 
V 7 HOH B 39 739 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . R 4 58.004 7.305 -47.019 1 32.49 ? C1 EDO 607 B 1 
HETATM 2 O O1 EDO . . . R 4 56.655 7.188 -47.412 1 27.24 ? O1 EDO 607 B 1 
HETATM 3 C C2 EDO . . . R 4 58.629 8.503 -47.689 1 40.38 ? C2 EDO 607 B 1 
HETATM 4 O O2 EDO . . . R 4 57.83 9.644 -47.468 1 34.01 ? O2 EDO 607 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#