data_9NTO
#
_model_server_result.job_id            hx8VMK3DLdVzETT4HDC-og 
_model_server_result.datetime_utc      '2025-07-13 18:36:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9nto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    9NTO 
#
_exptl.entry_id    9NTO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9NTO 
_cell.length_a            92.664 
_cell.length_b            58.219 
_cell.length_c            89.228 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9NTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 58.219 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A N GLY 1 A GLY 2 1_555 D C7A 2KA . A 2KA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
metalc ? metalc1 B SG CYS 169 B CYS 169 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc2 B SG CYS 177 B CYS 177 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc3 B SG CYS 180 B CYS 180 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 B SG CYS 183 B CYS 183 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     9NTO 
_atom_sites.fract_transf_matrix[1][1]    0.010792 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017177 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 AMP A 1 401 1 AMP AMP . 
D 4 2KA A 1 402 2 2KA LIG . 
E 5 ZN B 1 201 1 ZN ZN . 
F 6 ADN B 1 202 1 ADN ADN . 
G 7 HOH A 1 501 185 HOH HOH . 
G 7 HOH A 2 502 10 HOH HOH . 
G 7 HOH A 3 503 78 HOH HOH . 
G 7 HOH A 4 504 114 HOH HOH . 
G 7 HOH A 5 505 121 HOH HOH . 
G 7 HOH A 6 506 99 HOH HOH . 
G 7 HOH A 7 507 75 HOH HOH . 
G 7 HOH A 8 508 105 HOH HOH . 
G 7 HOH A 9 509 79 HOH HOH . 
G 7 HOH A 10 510 196 HOH HOH . 
G 7 HOH A 11 511 76 HOH HOH . 
G 7 HOH A 12 512 35 HOH HOH . 
G 7 HOH A 13 513 44 HOH HOH . 
G 7 HOH A 14 514 49 HOH HOH . 
G 7 HOH A 15 515 20 HOH HOH . 
G 7 HOH A 16 516 41 HOH HOH . 
G 7 HOH A 17 517 153 HOH HOH . 
G 7 HOH A 18 518 93 HOH HOH . 
G 7 HOH A 19 519 107 HOH HOH . 
G 7 HOH A 20 520 139 HOH HOH . 
G 7 HOH A 21 521 29 HOH HOH . 
G 7 HOH A 22 522 66 HOH HOH . 
G 7 HOH A 23 523 123 HOH HOH . 
G 7 HOH A 24 524 204 HOH HOH . 
G 7 HOH A 25 525 84 HOH HOH . 
G 7 HOH A 26 526 48 HOH HOH . 
G 7 HOH A 27 527 82 HOH HOH . 
G 7 HOH A 28 528 186 HOH HOH . 
G 7 HOH A 29 529 120 HOH HOH . 
G 7 HOH A 30 530 4 HOH HOH . 
G 7 HOH A 31 531 50 HOH HOH . 
G 7 HOH A 32 532 81 HOH HOH . 
G 7 HOH A 33 533 191 HOH HOH . 
G 7 HOH A 34 534 206 HOH HOH . 
G 7 HOH A 35 535 34 HOH HOH . 
G 7 HOH A 36 536 37 HOH HOH . 
G 7 HOH A 37 537 63 HOH HOH . 
G 7 HOH A 38 538 202 HOH HOH . 
G 7 HOH A 39 539 104 HOH HOH . 
G 7 HOH A 40 540 122 HOH HOH . 
G 7 HOH A 41 541 88 HOH HOH . 
G 7 HOH A 42 542 40 HOH HOH . 
G 7 HOH A 43 543 54 HOH HOH . 
G 7 HOH A 44 544 65 HOH HOH . 
G 7 HOH A 45 545 158 HOH HOH . 
G 7 HOH A 46 546 45 HOH HOH . 
G 7 HOH A 47 547 103 HOH HOH . 
G 7 HOH A 48 548 194 HOH HOH . 
G 7 HOH A 49 549 207 HOH HOH . 
G 7 HOH A 50 550 100 HOH HOH . 
G 7 HOH A 51 551 132 HOH HOH . 
G 7 HOH A 52 552 143 HOH HOH . 
G 7 HOH A 53 553 180 HOH HOH . 
G 7 HOH A 54 554 115 HOH HOH . 
G 7 HOH A 55 555 70 HOH HOH . 
G 7 HOH A 56 556 166 HOH HOH . 
G 7 HOH A 57 557 21 HOH HOH . 
G 7 HOH A 58 558 68 HOH HOH . 
G 7 HOH A 59 559 73 HOH HOH . 
G 7 HOH A 60 560 95 HOH HOH . 
G 7 HOH A 61 561 96 HOH HOH . 
G 7 HOH A 62 562 145 HOH HOH . 
G 7 HOH A 63 563 160 HOH HOH . 
G 7 HOH A 64 564 77 HOH HOH . 
G 7 HOH A 65 565 178 HOH HOH . 
G 7 HOH A 66 566 108 HOH HOH . 
G 7 HOH A 67 567 169 HOH HOH . 
G 7 HOH A 68 568 189 HOH HOH . 
G 7 HOH A 69 569 94 HOH HOH . 
G 7 HOH A 70 570 106 HOH HOH . 
G 7 HOH A 71 571 46 HOH HOH . 
G 7 HOH A 72 572 146 HOH HOH . 
G 7 HOH A 73 573 134 HOH HOH . 
G 7 HOH A 74 574 80 HOH HOH . 
G 7 HOH A 75 575 162 HOH HOH . 
G 7 HOH A 76 576 199 HOH HOH . 
G 7 HOH A 77 577 111 HOH HOH . 
G 7 HOH A 78 578 198 HOH HOH . 
G 7 HOH A 79 579 203 HOH HOH . 
G 7 HOH A 80 580 179 HOH HOH . 
G 7 HOH A 81 581 69 HOH HOH . 
G 7 HOH A 82 582 167 HOH HOH . 
G 7 HOH A 83 583 200 HOH HOH . 
G 7 HOH A 84 584 67 HOH HOH . 
G 7 HOH A 85 585 117 HOH HOH . 
G 7 HOH A 86 586 184 HOH HOH . 
G 7 HOH A 87 587 140 HOH HOH . 
G 7 HOH A 88 588 142 HOH HOH . 
G 7 HOH A 89 589 211 HOH HOH . 
G 7 HOH A 90 590 62 HOH HOH . 
G 7 HOH A 91 591 174 HOH HOH . 
G 7 HOH A 92 592 171 HOH HOH . 
G 7 HOH A 93 593 205 HOH HOH . 
G 7 HOH A 94 594 135 HOH HOH . 
G 7 HOH A 95 595 138 HOH HOH . 
G 7 HOH A 96 596 61 HOH HOH . 
G 7 HOH A 97 597 98 HOH HOH . 
G 7 HOH A 98 598 85 HOH HOH . 
G 7 HOH A 99 599 119 HOH HOH . 
G 7 HOH A 100 600 208 HOH HOH . 
H 7 HOH B 1 301 197 HOH HOH . 
H 7 HOH B 2 302 159 HOH HOH . 
H 7 HOH B 3 303 5 HOH HOH . 
H 7 HOH B 4 304 12 HOH HOH . 
H 7 HOH B 5 305 7 HOH HOH . 
H 7 HOH B 6 306 19 HOH HOH . 
H 7 HOH B 7 307 28 HOH HOH . 
H 7 HOH B 8 308 31 HOH HOH . 
H 7 HOH B 9 309 60 HOH HOH . 
H 7 HOH B 10 310 22 HOH HOH . 
H 7 HOH B 11 311 116 HOH HOH . 
H 7 HOH B 12 312 113 HOH HOH . 
H 7 HOH B 13 313 157 HOH HOH . 
H 7 HOH B 14 314 8 HOH HOH . 
H 7 HOH B 15 315 51 HOH HOH . 
H 7 HOH B 16 316 57 HOH HOH . 
H 7 HOH B 17 317 39 HOH HOH . 
H 7 HOH B 18 318 83 HOH HOH . 
H 7 HOH B 19 319 91 HOH HOH . 
H 7 HOH B 20 320 2 HOH HOH . 
H 7 HOH B 21 321 27 HOH HOH . 
H 7 HOH B 22 322 14 HOH HOH . 
H 7 HOH B 23 323 144 HOH HOH . 
H 7 HOH B 24 324 173 HOH HOH . 
H 7 HOH B 25 325 17 HOH HOH . 
H 7 HOH B 26 326 89 HOH HOH . 
H 7 HOH B 27 327 127 HOH HOH . 
H 7 HOH B 28 328 24 HOH HOH . 
H 7 HOH B 29 329 55 HOH HOH . 
H 7 HOH B 30 330 36 HOH HOH . 
H 7 HOH B 31 331 6 HOH HOH . 
H 7 HOH B 32 332 11 HOH HOH . 
H 7 HOH B 33 333 13 HOH HOH . 
H 7 HOH B 34 334 128 HOH HOH . 
H 7 HOH B 35 335 23 HOH HOH . 
H 7 HOH B 36 336 1 HOH HOH . 
H 7 HOH B 37 337 32 HOH HOH . 
H 7 HOH B 38 338 26 HOH HOH . 
H 7 HOH B 39 339 86 HOH HOH . 
H 7 HOH B 40 340 101 HOH HOH . 
H 7 HOH B 41 341 154 HOH HOH . 
H 7 HOH B 42 342 92 HOH HOH . 
H 7 HOH B 43 343 47 HOH HOH . 
H 7 HOH B 44 344 210 HOH HOH . 
H 7 HOH B 45 345 136 HOH HOH . 
H 7 HOH B 46 346 176 HOH HOH . 
H 7 HOH B 47 347 56 HOH HOH . 
H 7 HOH B 48 348 25 HOH HOH . 
H 7 HOH B 49 349 58 HOH HOH . 
H 7 HOH B 50 350 97 HOH HOH . 
H 7 HOH B 51 351 16 HOH HOH . 
H 7 HOH B 52 352 71 HOH HOH . 
H 7 HOH B 53 353 87 HOH HOH . 
H 7 HOH B 54 354 30 HOH HOH . 
H 7 HOH B 55 355 110 HOH HOH . 
H 7 HOH B 56 356 141 HOH HOH . 
H 7 HOH B 57 357 9 HOH HOH . 
H 7 HOH B 58 358 187 HOH HOH . 
H 7 HOH B 59 359 72 HOH HOH . 
H 7 HOH B 60 360 3 HOH HOH . 
H 7 HOH B 61 361 53 HOH HOH . 
H 7 HOH B 62 362 172 HOH HOH . 
H 7 HOH B 63 363 112 HOH HOH . 
H 7 HOH B 64 364 193 HOH HOH . 
H 7 HOH B 65 365 109 HOH HOH . 
H 7 HOH B 66 366 148 HOH HOH . 
H 7 HOH B 67 367 15 HOH HOH . 
H 7 HOH B 68 368 177 HOH HOH . 
H 7 HOH B 69 369 33 HOH HOH . 
H 7 HOH B 70 370 150 HOH HOH . 
H 7 HOH B 71 371 149 HOH HOH . 
H 7 HOH B 72 372 74 HOH HOH . 
H 7 HOH B 73 373 181 HOH HOH . 
H 7 HOH B 74 374 90 HOH HOH . 
H 7 HOH B 75 375 183 HOH HOH . 
H 7 HOH B 76 376 156 HOH HOH . 
H 7 HOH B 77 377 43 HOH HOH . 
H 7 HOH B 78 378 137 HOH HOH . 
H 7 HOH B 79 379 38 HOH HOH . 
H 7 HOH B 80 380 131 HOH HOH . 
H 7 HOH B 81 381 18 HOH HOH . 
H 7 HOH B 82 382 164 HOH HOH . 
H 7 HOH B 83 383 192 HOH HOH . 
H 7 HOH B 84 384 42 HOH HOH . 
H 7 HOH B 85 385 188 HOH HOH . 
H 7 HOH B 86 386 125 HOH HOH . 
H 7 HOH B 87 387 64 HOH HOH . 
H 7 HOH B 88 388 118 HOH HOH . 
H 7 HOH B 89 389 129 HOH HOH . 
H 7 HOH B 90 390 147 HOH HOH . 
H 7 HOH B 91 391 102 HOH HOH . 
H 7 HOH B 92 392 52 HOH HOH . 
H 7 HOH B 93 393 190 HOH HOH . 
H 7 HOH B 94 394 168 HOH HOH . 
H 7 HOH B 95 395 130 HOH HOH . 
H 7 HOH B 96 396 201 HOH HOH . 
H 7 HOH B 97 397 133 HOH HOH . 
H 7 HOH B 98 398 163 HOH HOH . 
H 7 HOH B 99 399 195 HOH HOH . 
H 7 HOH B 100 400 170 HOH HOH . 
H 7 HOH B 101 401 124 HOH HOH . 
H 7 HOH B 102 402 165 HOH HOH . 
H 7 HOH B 103 403 152 HOH HOH . 
H 7 HOH B 104 404 151 HOH HOH . 
H 7 HOH B 105 405 161 HOH HOH . 
H 7 HOH B 106 406 155 HOH HOH . 
H 7 HOH B 107 407 182 HOH HOH . 
H 7 HOH B 108 408 126 HOH HOH . 
H 7 HOH B 109 409 209 HOH HOH . 
H 7 HOH B 110 410 59 HOH HOH . 
H 7 HOH B 111 411 175 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               24.433 
_atom_site.Cartn_y               29.192 
_atom_site.Cartn_z               2.2 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              154 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#