data_9NWB # _model_server_result.job_id Y4i3kQcZdGpalbf9fVx_Xg _model_server_result.datetime_utc '2025-07-02 23:05:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9nwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9NWB # _exptl.entry_id 9NWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 763.61 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1S,2R)-1-hydroxy-1-(5-iodo-1,3-benzothiazol-2-yl)-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9NWB _cell.length_a 45.412 _cell.length_b 64.071 _cell.length_c 104.988 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9NWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C20 _struct_conn.ptnr2_label_comp_id A1B7A _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1B7A _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.905 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H37 F3 I N5 O5 S' _chem_comp.formula_weight 763.61 _chem_comp.id A1B7A _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1S,2R)-1-hydroxy-1-(5-iodo-1,3-benzothiazol-2-yl)-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TKB-280-5I # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C7 A1B7A sing 1 n n C7 F3 A1B7A sing 2 n n C7 F1 A1B7A sing 3 n n C7 C6 A1B7A sing 4 n n C3 C2 A1B7A sing 5 n n C6 O1 A1B7A doub 6 n n C6 N1 A1B7A sing 7 n n C1 C2 A1B7A sing 8 n n N1 C5 A1B7A sing 9 n n C2 C5 A1B7A sing 10 n n C2 C4 A1B7A sing 11 n n C5 C8 A1B7A sing 12 n n N4 C18 A1B7A sing 13 n n N4 C19 A1B7A sing 14 n n C18 C17 A1B7A sing 15 n n O2 C8 A1B7A doub 16 n n C8 N2 A1B7A sing 17 n n C19 O4 A1B7A doub 18 n n C19 C16 A1B7A sing 19 n n C17 C16 A1B7A sing 20 n n N2 C9 A1B7A sing 21 n n N2 C12 A1B7A sing 22 n n C9 C10 A1B7A sing 23 n n C16 C15 A1B7A sing 24 n n C29 C28 A1B7A sing 25 n n C12 C13 A1B7A sing 26 n n C12 C11 A1B7A sing 27 n n O3 C13 A1B7A doub 28 n n C10 C28 A1B7A sing 29 n n C10 C11 A1B7A sing 30 n n C13 N3 A1B7A sing 31 n n C15 C14 A1B7A sing 32 n n C28 C11 A1B7A sing 33 n n C28 C30 A1B7A sing 34 n n N3 C14 A1B7A sing 35 n n C14 C20 A1B7A sing 36 n n C20 O5 A1B7A sing 37 n n C20 C21 A1B7A sing 38 n n C21 N5 A1B7A doub 39 n y C21 S1 A1B7A sing 40 n y N5 C22 A1B7A sing 41 n y C22 C23 A1B7A doub 42 n y C22 C27 A1B7A sing 43 n y S1 C27 A1B7A sing 44 n y C23 C24 A1B7A sing 45 n y C27 C26 A1B7A doub 46 n y C24 I1 A1B7A sing 47 n n C24 C25 A1B7A doub 48 n y C26 C25 A1B7A sing 49 n y C4 H1 A1B7A sing 50 n n C4 H2 A1B7A sing 51 n n C4 H3 A1B7A sing 52 n n C14 H4 A1B7A sing 53 n n C5 H5 A1B7A sing 54 n n C11 H6 A1B7A sing 55 n n C9 H7 A1B7A sing 56 n n C9 H8 A1B7A sing 57 n n C10 H9 A1B7A sing 58 n n C12 H10 A1B7A sing 59 n n N1 H11 A1B7A sing 60 n n C3 H12 A1B7A sing 61 n n C3 H13 A1B7A sing 62 n n C3 H14 A1B7A sing 63 n n N3 H15 A1B7A sing 64 n n C1 H16 A1B7A sing 65 n n C1 H17 A1B7A sing 66 n n C1 H18 A1B7A sing 67 n n C15 H19 A1B7A sing 68 n n C15 H20 A1B7A sing 69 n n C16 H21 A1B7A sing 70 n n C17 H22 A1B7A sing 71 n n C17 H23 A1B7A sing 72 n n C18 H24 A1B7A sing 73 n n C18 H25 A1B7A sing 74 n n N4 H26 A1B7A sing 75 n n C23 H27 A1B7A sing 76 n n C25 H28 A1B7A sing 77 n n C26 H29 A1B7A sing 78 n n C29 H30 A1B7A sing 79 n n C29 H31 A1B7A sing 80 n n C29 H32 A1B7A sing 81 n n C30 H33 A1B7A sing 82 n n C30 H34 A1B7A sing 83 n n C30 H35 A1B7A sing 84 n n C20 H36 A1B7A sing 85 n n O5 H37 A1B7A sing 86 n n # _atom_sites.entry_id 9NWB _atom_sites.fract_transf_matrix[1][1] 0.022021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1B7A A 1 401 401 A1B7A DRG . C 3 HOH A 1 501 23 HOH HOH . C 3 HOH A 2 502 19 HOH HOH . C 3 HOH A 3 503 12 HOH HOH . C 3 HOH A 4 504 18 HOH HOH . C 3 HOH A 5 505 6 HOH HOH . C 3 HOH A 6 506 2 HOH HOH . C 3 HOH A 7 507 15 HOH HOH . C 3 HOH A 8 508 16 HOH HOH . C 3 HOH A 9 509 25 HOH HOH . C 3 HOH A 10 510 8 HOH HOH . C 3 HOH A 11 511 13 HOH HOH . C 3 HOH A 12 512 3 HOH HOH . C 3 HOH A 13 513 7 HOH HOH . C 3 HOH A 14 514 4 HOH HOH . C 3 HOH A 15 515 22 HOH HOH . C 3 HOH A 16 516 21 HOH HOH . C 3 HOH A 17 517 9 HOH HOH . C 3 HOH A 18 518 10 HOH HOH . C 3 HOH A 19 519 14 HOH HOH . C 3 HOH A 20 520 11 HOH HOH . C 3 HOH A 21 521 1 HOH HOH . C 3 HOH A 22 522 17 HOH HOH . C 3 HOH A 23 523 24 HOH HOH . C 3 HOH A 24 524 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1B7A . . . B 2 -21.2 13.336 -28.766 1 22.44 ? C4 A1B7A 401 A 1 HETATM 2 C C14 A1B7A . . . B 2 -17.344 12.209 -24.361 1 21.97 ? C14 A1B7A 401 A 1 HETATM 3 C C5 A1B7A . . . B 2 -19.912 15.291 -29.433 1 20.68 ? C5 A1B7A 401 A 1 HETATM 4 C C6 A1B7A . . . B 2 -19.448 17.221 -30.857 1 30.02 ? C6 A1B7A 401 A 1 HETATM 5 C C11 A1B7A . . . B 2 -19.405 16.377 -24.811 1 19.45 ? C11 A1B7A 401 A 1 HETATM 6 C C7 A1B7A . . . B 2 -18.386 17.916 -31.745 1 33.81 ? C7 A1B7A 401 A 1 HETATM 7 C C8 A1B7A . . . B 2 -19.078 15.078 -28.176 1 18.03 ? C8 A1B7A 401 A 1 HETATM 8 C C9 A1B7A . . . B 2 -20.711 16.488 -26.881 1 20.87 ? C9 A1B7A 401 A 1 HETATM 9 C C10 A1B7A . . . B 2 -20.617 16.99 -25.457 1 20.51 ? C10 A1B7A 401 A 1 HETATM 10 C C12 A1B7A . . . B 2 -18.785 15.419 -25.818 1 20.2 ? C12 A1B7A 401 A 1 HETATM 11 C C13 A1B7A . . . B 2 -18.912 13.968 -25.371 1 18.74 ? C13 A1B7A 401 A 1 HETATM 12 N N1 A1B7A . . . B 2 -19.076 16.037 -30.377 1 21.53 ? N1 A1B7A 401 A 1 HETATM 13 N N2 A1B7A . . . B 2 -19.521 15.635 -27.052 1 18.12 ? N2 A1B7A 401 A 1 HETATM 14 C C3 A1B7A . . . B 2 -21.569 14.233 -31.053 1 23.54 ? C3 A1B7A 401 A 1 HETATM 15 N N3 A1B7A . . . B 2 -17.819 13.537 -24.729 1 19.09 ? N3 A1B7A 401 A 1 HETATM 16 C C1 A1B7A . . . B 2 -19.427 13.045 -30.56 1 22 ? C1 A1B7A 401 A 1 HETATM 17 C C2 A1B7A . . . B 2 -20.506 13.976 -29.976 1 21.17 ? C2 A1B7A 401 A 1 HETATM 18 O O1 A1B7A . . . B 2 -20.528 17.766 -30.651 1 28.18 ? O1 A1B7A 401 A 1 HETATM 19 F F1 A1B7A . . . B 2 -18.2 19.178 -31.466 1 37.83 ? F1 A1B7A 401 A 1 HETATM 20 F F2 A1B7A . . . B 2 -18.461 17.827 -33.066 1 39.7 ? F2 A1B7A 401 A 1 HETATM 21 F F3 A1B7A . . . B 2 -17.217 17.365 -31.557 1 34.88 ? F3 A1B7A 401 A 1 HETATM 22 O O2 A1B7A . . . B 2 -18.062 14.42 -28.217 1 16.73 ? O2 A1B7A 401 A 1 HETATM 23 O O3 A1B7A . . . B 2 -19.934 13.337 -25.588 1 15.2 ? O3 A1B7A 401 A 1 HETATM 24 C C15 A1B7A . . . B 2 -18.006 11.15 -25.22 1 27.83 ? C15 A1B7A 401 A 1 HETATM 25 C C16 A1B7A . . . B 2 -17.345 10.327 -26.326 1 26.48 ? C16 A1B7A 401 A 1 HETATM 26 C C17 A1B7A . . . B 2 -18.605 10.308 -27.197 1 24.64 ? C17 A1B7A 401 A 1 HETATM 27 C C18 A1B7A . . . B 2 -18.176 9.486 -28.384 1 23.78 ? C18 A1B7A 401 A 1 HETATM 28 N N4 A1B7A . . . B 2 -16.732 9.693 -28.411 1 25.7 ? N4 A1B7A 401 A 1 HETATM 29 C C19 A1B7A . . . B 2 -16.251 10.394 -27.395 1 24.9 ? C19 A1B7A 401 A 1 HETATM 30 O O4 A1B7A . . . B 2 -15.088 10.834 -27.369 1 26.21 ? O4 A1B7A 401 A 1 HETATM 31 C C20 A1B7A . . . B 2 -17.634 11.944 -22.89 1 20.11 ? C20 A1B7A 401 A 1 HETATM 32 O O5 A1B7A . . . B 2 -17.302 10.852 -22.431 1 19.82 ? O5 A1B7A 401 A 1 HETATM 33 C C21 A1B7A . . . B 2 -18.628 12.699 -22.247 1 20.3 ? C21 A1B7A 401 A 1 HETATM 34 N N5 A1B7A . . . B 2 -19.868 12.211 -22.205 1 18.69 ? N5 A1B7A 401 A 1 HETATM 35 C C22 A1B7A . . . B 2 -20.776 13.098 -21.6 1 22.27 ? C22 A1B7A 401 A 1 HETATM 36 C C23 A1B7A . . . B 2 -22.148 12.914 -21.415 1 22.68 ? C23 A1B7A 401 A 1 HETATM 37 C C24 A1B7A . . . B 2 -22.844 13.91 -20.761 1 28.11 ? C24 A1B7A 401 A 1 HETATM 38 I I1 A1B7A . . . B 2 -24.929 13.697 -20.467 1 44.02 ? I1 A1B7A 401 A 1 HETATM 39 C C25 A1B7A . . . B 2 -22.247 15.097 -20.312 1 25.7 ? C25 A1B7A 401 A 1 HETATM 40 C C26 A1B7A . . . B 2 -20.891 15.294 -20.494 1 24.23 ? C26 A1B7A 401 A 1 HETATM 41 C C27 A1B7A . . . B 2 -20.16 14.3 -21.147 1 23.17 ? C27 A1B7A 401 A 1 HETATM 42 S S1 A1B7A . . . B 2 -18.453 14.266 -21.489 1 23.32 ? S1 A1B7A 401 A 1 HETATM 43 C C28 A1B7A . . . B 2 -19.428 17.859 -25.097 1 21.4 ? C28 A1B7A 401 A 1 HETATM 44 C C29 A1B7A . . . B 2 -18.59 18.489 -26.196 1 21.43 ? C29 A1B7A 401 A 1 HETATM 45 C C30 A1B7A . . . B 2 -19.572 18.777 -23.902 1 19.95 ? C30 A1B7A 401 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #