data_9O0S # _model_server_result.job_id 1uOlUzhhEgZXmWxXWCJ2jA _model_server_result.datetime_utc '2025-06-30 08:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9o0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9O0S # _exptl.entry_id 9O0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9O0S _cell.length_a 69.75 _cell.length_b 69.75 _cell.length_c 92.72 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9O0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 B O1G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 9O0S _atom_sites.fract_transf_matrix[1][1] 0.014337 _atom_sites.fract_transf_matrix[1][2] 0.008277 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 1 GNP GNP . C 3 MG A 1 202 1 MG MG . D 4 HOH A 1 301 20 HOH HOH . D 4 HOH A 2 302 9 HOH HOH . D 4 HOH A 3 303 31 HOH HOH . D 4 HOH A 4 304 15 HOH HOH . D 4 HOH A 5 305 26 HOH HOH . D 4 HOH A 6 306 10 HOH HOH . D 4 HOH A 7 307 12 HOH HOH . D 4 HOH A 8 308 23 HOH HOH . D 4 HOH A 9 309 42 HOH HOH . D 4 HOH A 10 310 41 HOH HOH . D 4 HOH A 11 311 24 HOH HOH . D 4 HOH A 12 312 32 HOH HOH . D 4 HOH A 13 313 2 HOH HOH . D 4 HOH A 14 314 17 HOH HOH . D 4 HOH A 15 315 49 HOH HOH . D 4 HOH A 16 316 14 HOH HOH . D 4 HOH A 17 317 13 HOH HOH . D 4 HOH A 18 318 27 HOH HOH . D 4 HOH A 19 319 4 HOH HOH . D 4 HOH A 20 320 38 HOH HOH . D 4 HOH A 21 321 22 HOH HOH . D 4 HOH A 22 322 50 HOH HOH . D 4 HOH A 23 323 25 HOH HOH . D 4 HOH A 24 324 48 HOH HOH . D 4 HOH A 25 325 43 HOH HOH . D 4 HOH A 26 326 34 HOH HOH . D 4 HOH A 27 327 36 HOH HOH . D 4 HOH A 28 328 46 HOH HOH . D 4 HOH A 29 329 47 HOH HOH . D 4 HOH A 30 330 45 HOH HOH . D 4 HOH A 31 331 1 HOH HOH . D 4 HOH A 32 332 3 HOH HOH . D 4 HOH A 33 333 16 HOH HOH . D 4 HOH A 34 334 6 HOH HOH . D 4 HOH A 35 335 7 HOH HOH . D 4 HOH A 36 336 5 HOH HOH . D 4 HOH A 37 337 30 HOH HOH . D 4 HOH A 38 338 29 HOH HOH . D 4 HOH A 39 339 21 HOH HOH . D 4 HOH A 40 340 37 HOH HOH . D 4 HOH A 41 341 33 HOH HOH . D 4 HOH A 42 342 39 HOH HOH . D 4 HOH A 43 343 35 HOH HOH . D 4 HOH A 44 344 18 HOH HOH . D 4 HOH A 45 345 19 HOH HOH . D 4 HOH A 46 346 11 HOH HOH . D 4 HOH A 47 347 28 HOH HOH . D 4 HOH A 48 348 44 HOH HOH . D 4 HOH A 49 349 40 HOH HOH . D 4 HOH A 50 350 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -13.938 -5.605 -22.135 1 32.09 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -15.323 -6.108 -22.541 1 32.24 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -13.874 -4.139 -21.674 1 27.9 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -12.803 -5.978 -23.077 1 31.05 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -13.687 -6.592 -20.698 1 21.4 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -14.765 -6.729 -19.453 1 29.11 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -14.581 -5.703 -18.373 1 27.26 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -16.192 -6.971 -19.944 1 28.34 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -14.265 -8.14 -18.707 1 21.45 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -15.061 -9.584 -18.821 1 24.88 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -16.346 -9.475 -18.103 1 24.75 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -14.988 -10.034 -20.242 1 26.55 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -14.076 -10.459 -17.842 1 26.01 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -12.678 -10.481 -18.076 1 27.67 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -12.065 -11.762 -17.546 1 28.86 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -12.063 -11.759 -16.111 1 28.65 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -12.787 -13.048 -17.957 1 28.54 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -11.805 -14.052 -18.07 1 34 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -13.702 -13.315 -16.768 1 29.49 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -13.992 -14.674 -16.592 1 30.67 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -12.89 -12.768 -15.598 1 25.66 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -13.693 -12.262 -14.512 1 22.15 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -14.723 -11.335 -14.592 1 21.5 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -15.223 -11.071 -13.417 1 21.36 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -14.519 -11.845 -12.53 1 22.52 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 -14.629 -11.983 -11.111 1 26.76 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 -15.403 -11.419 -10.355 1 25.81 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 -13.678 -12.899 -10.615 1 24.19 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 -12.767 -13.57 -11.377 1 24.06 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 -11.923 -14.412 -10.75 1 25.9 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -12.685 -13.442 -12.68 1 23.94 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -13.561 -12.578 -13.195 1 20.76 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #