data_9O8U # _model_server_result.job_id IHB2MHP-pamIH_A6tw5kXA _model_server_result.datetime_utc '2025-08-05 06:32:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9o8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 9O8U # _exptl.entry_id 9O8U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 116.072 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FUMARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9O8U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9O8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 32 B CYS 32 1_555 I FE4 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 B SG CYS 35 B CYS 35 1_555 I FE1 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 B SG CYS 51 B CYS 51 1_555 I FE3 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 B SG CYS 86 B CYS 86 1_555 I FE2 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 C SG CYS 3 C CYS 4 1_555 J FE3 SF4 . C SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 C SG CYS 6 C CYS 7 1_555 J FE1 SF4 . C SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc7 C SG CYS 21 C CYS 22 1_555 J FE2 SF4 . C SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 C SG CYS 47 C CYS 48 1_555 J FE4 SF4 . C SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc9 D SG CYS 3 D CYS 3 1_555 K FE FE . D FE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc10 D SG CYS 6 D CYS 6 1_555 K FE FE . D FE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc11 D SG CYS 32 D CYS 32 1_555 K FE FE . D FE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 D SG CYS 35 D CYS 35 1_555 K FE FE . D FE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc13 F SG CYS 3 F CYS 4 1_555 L FE3 SF4 . F SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc14 F SG CYS 6 F CYS 7 1_555 L FE1 SF4 . F SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc15 F SG CYS 21 F CYS 22 1_555 L FE2 SF4 . F SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc16 F SG CYS 47 F CYS 48 1_555 L FE4 SF4 . F SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C4 H4 O4' _chem_comp.formula_weight 116.072 _chem_comp.id FUM _chem_comp.mon_nstd_flag . _chem_comp.name 'FUMARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C FUM sing 100 n n OXT HXT FUM sing 101 n n C O FUM doub 102 n n C C4 FUM sing 103 n n C4 C5 FUM doub 104 e n C4 H4 FUM sing 105 n n C5 C6 FUM sing 106 n n C5 H5 FUM sing 107 n n C6 O7 FUM doub 108 n n C6 O8 FUM sing 109 n n O8 HO8 FUM sing 110 n n # _atom_sites.entry_id 9O8U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 FUM A 1 901 901 FUM FUM . H 6 DTT A 1 902 1001 DTT DTT . I 7 SF4 B 1 201 1 SF4 SF4 . J 7 SF4 C 1 101 101 SF4 SF4 . K 8 FE D 1 101 1 FE FE . L 7 SF4 F 1 101 1 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT FUM . . . G 5 142.074 137.011 154.023 1 59.54 ? OXT FUM 901 A 1 HETATM 2 C C FUM . . . G 5 141.688 136.511 155.098 1 59.54 ? C FUM 901 A 1 HETATM 3 O O FUM . . . G 5 142.072 136.829 156.243 1 59.54 ? O FUM 901 A 1 HETATM 4 C C4 FUM . . . G 5 140.664 135.402 155.039 1 59.54 ? C4 FUM 901 A 1 HETATM 5 C C5 FUM . . . G 5 140.278 134.811 153.913 1 59.54 ? C5 FUM 901 A 1 HETATM 6 C C6 FUM . . . G 5 139.261 133.698 153.821 1 59.54 ? C6 FUM 901 A 1 HETATM 7 O O7 FUM . . . G 5 138.768 133.258 154.878 1 59.54 ? O7 FUM 901 A 1 HETATM 8 O O8 FUM . . . G 5 139 133.306 152.664 1 59.54 ? O8 FUM 901 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #