data_9OIO # _model_server_result.job_id 9DYV9wKksMJT_FdElf1sgg _model_server_result.datetime_utc '2025-07-14 22:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9oio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":301}' # _entry.id 9OIO # _exptl.entry_id 9OIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9OIO _cell.length_a 92.904 _cell.length_b 92.904 _cell.length_c 359.384 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9OIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 ? trimeric 3 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N,Y,Z,AA 1 1 D,E,F,O,P,Q,R,BA,CA,DA 2 1 G,H,I,S,T,U,EA,FA,GA 3 1 J,K,L,V,W,X,HA,IA,JA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 Q N N ? 6 R N N ? 6 T N N ? 6 U N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PHE 43 C PHE 76 1_555 C N CAS 44 C CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 C C CAS 44 C CAS 77 1_555 C N ASN 45 C ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 F C PHE 43 F PHE 76 1_555 F N CAS 44 F CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 F C CAS 44 F CAS 77 1_555 F N ASN 45 F ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 L C PHE 43 L PHE 76 1_555 L N CAS 44 L CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 L C CAS 44 L CAS 77 1_555 L N ASN 45 L ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 169 n n S C1 DMS sing 170 n n S C2 DMS sing 171 n n C1 H11 DMS sing 172 n n C1 H12 DMS sing 173 n n C1 H13 DMS sing 174 n n C2 H21 DMS sing 175 n n C2 H22 DMS sing 176 n n C2 H23 DMS sing 177 n n # _atom_sites.entry_id 9OIO _atom_sites.fract_transf_matrix[1][1] 0.010764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 A1CBL C 1 301 301 A1CBL 304 . N 6 DMS C 1 302 302 DMS DMS . O 7 A1CBK E 1 201 201 A1CBK 275 . P 5 A1CBL F 1 301 301 A1CBL 304 . Q 6 DMS F 1 302 302 DMS DMS . R 6 DMS F 1 303 303 DMS DMS . S 7 A1CBK H 1 201 201 A1CBK 275 . T 6 DMS H 1 202 202 DMS DMS . U 6 DMS I 1 301 301 DMS DMS . V 7 A1CBK K 1 201 201 A1CBK 275 . W 5 A1CBL L 1 301 301 A1CBL 304 . X 6 DMS L 1 302 302 DMS DMS . Y 8 HOH A 1 201 477 HOH HOH . Y 8 HOH A 2 202 3010 HOH HOH . Y 8 HOH A 3 203 1 HOH HOH . Y 8 HOH A 4 204 540 HOH HOH . Y 8 HOH A 5 205 469 HOH HOH . Y 8 HOH A 6 206 15 HOH HOH . Y 8 HOH A 7 207 2740 HOH HOH . Y 8 HOH A 8 208 14 HOH HOH . Y 8 HOH A 9 209 2754 HOH HOH . Y 8 HOH A 10 210 197 HOH HOH . Y 8 HOH A 11 211 196 HOH HOH . Y 8 HOH A 12 212 68 HOH HOH . Y 8 HOH A 13 213 2330 HOH HOH . Y 8 HOH A 14 214 11 HOH HOH . Y 8 HOH A 15 215 1271 HOH HOH . Y 8 HOH A 16 216 290 HOH HOH . Y 8 HOH A 17 217 329 HOH HOH . Y 8 HOH A 18 218 356 HOH HOH . Y 8 HOH A 19 219 794 HOH HOH . Y 8 HOH A 20 220 28 HOH HOH . Y 8 HOH A 21 221 74 HOH HOH . Y 8 HOH A 22 222 42 HOH HOH . Y 8 HOH A 23 223 681 HOH HOH . Y 8 HOH A 24 224 249 HOH HOH . Y 8 HOH A 25 225 2106 HOH HOH . Y 8 HOH A 26 226 39 HOH HOH . Y 8 HOH A 27 227 3537 HOH HOH . Y 8 HOH A 28 228 2555 HOH HOH . Y 8 HOH A 29 229 2327 HOH HOH . Y 8 HOH A 30 230 531 HOH HOH . Y 8 HOH A 31 231 843 HOH HOH . Y 8 HOH A 32 232 3144 HOH HOH . Y 8 HOH A 33 233 1319 HOH HOH . Y 8 HOH A 34 234 746 HOH HOH . Z 8 HOH B 1 201 2027 HOH HOH . Z 8 HOH B 2 202 461 HOH HOH . Z 8 HOH B 3 203 100 HOH HOH . Z 8 HOH B 4 204 404 HOH HOH . Z 8 HOH B 5 205 340 HOH HOH . Z 8 HOH B 6 206 82 HOH HOH . Z 8 HOH B 7 207 132 HOH HOH . Z 8 HOH B 8 208 20 HOH HOH . Z 8 HOH B 9 209 2291 HOH HOH . Z 8 HOH B 10 210 2016 HOH HOH . Z 8 HOH B 11 211 2639 HOH HOH . Z 8 HOH B 12 212 62 HOH HOH . Z 8 HOH B 13 213 1466 HOH HOH . Z 8 HOH B 14 214 3026 HOH HOH . AA 8 HOH C 1 401 245 HOH HOH . AA 8 HOH C 2 402 67 HOH HOH . AA 8 HOH C 3 403 2207 HOH HOH . AA 8 HOH C 4 404 685 HOH HOH . AA 8 HOH C 5 405 873 HOH HOH . AA 8 HOH C 6 406 13 HOH HOH . AA 8 HOH C 7 407 144 HOH HOH . AA 8 HOH C 8 408 40 HOH HOH . AA 8 HOH C 9 409 2755 HOH HOH . AA 8 HOH C 10 410 433 HOH HOH . AA 8 HOH C 11 411 45 HOH HOH . AA 8 HOH C 12 412 14 HOH HOH . AA 8 HOH C 13 413 2793 HOH HOH . AA 8 HOH C 14 414 2634 HOH HOH . AA 8 HOH C 15 415 346 HOH HOH . AA 8 HOH C 16 416 141 HOH HOH . AA 8 HOH C 17 417 2760 HOH HOH . AA 8 HOH C 18 418 3206 HOH HOH . BA 8 HOH D 1 201 985 HOH HOH . BA 8 HOH D 2 202 1473 HOH HOH . BA 8 HOH D 3 203 1326 HOH HOH . BA 8 HOH D 4 204 126 HOH HOH . BA 8 HOH D 5 205 901 HOH HOH . BA 8 HOH D 6 206 965 HOH HOH . BA 8 HOH D 7 207 128 HOH HOH . BA 8 HOH D 8 208 418 HOH HOH . BA 8 HOH D 9 209 20 HOH HOH . BA 8 HOH D 10 210 9 HOH HOH . CA 8 HOH E 1 301 429 HOH HOH . CA 8 HOH E 2 302 248 HOH HOH . CA 8 HOH E 3 303 81 HOH HOH . CA 8 HOH E 4 304 8 HOH HOH . CA 8 HOH E 5 305 73 HOH HOH . CA 8 HOH E 6 306 280 HOH HOH . CA 8 HOH E 7 307 2600 HOH HOH . CA 8 HOH E 8 308 80 HOH HOH . CA 8 HOH E 9 309 2527 HOH HOH . CA 8 HOH E 10 310 784 HOH HOH . DA 8 HOH F 1 401 222 HOH HOH . DA 8 HOH F 2 402 258 HOH HOH . DA 8 HOH F 3 403 101 HOH HOH . DA 8 HOH F 4 404 5 HOH HOH . DA 8 HOH F 5 405 17 HOH HOH . DA 8 HOH F 6 406 6 HOH HOH . DA 8 HOH F 7 407 13 HOH HOH . DA 8 HOH F 8 408 38 HOH HOH . DA 8 HOH F 9 409 1178 HOH HOH . DA 8 HOH F 10 410 139 HOH HOH . DA 8 HOH F 11 411 938 HOH HOH . DA 8 HOH F 12 412 195 HOH HOH . DA 8 HOH F 13 413 77 HOH HOH . DA 8 HOH F 14 414 966 HOH HOH . DA 8 HOH F 15 415 967 HOH HOH . DA 8 HOH F 16 416 646 HOH HOH . DA 8 HOH F 17 417 2615 HOH HOH . DA 8 HOH F 18 418 18 HOH HOH . DA 8 HOH F 19 419 2412 HOH HOH . DA 8 HOH F 20 420 969 HOH HOH . DA 8 HOH F 21 421 2891 HOH HOH . DA 8 HOH F 22 422 587 HOH HOH . DA 8 HOH F 23 423 2465 HOH HOH . DA 8 HOH F 24 424 3176 HOH HOH . DA 8 HOH F 25 425 3480 HOH HOH . DA 8 HOH F 26 426 1169 HOH HOH . DA 8 HOH F 27 427 1570 HOH HOH . DA 8 HOH F 28 428 207 HOH HOH . DA 8 HOH F 29 429 627 HOH HOH . EA 8 HOH G 1 201 7 HOH HOH . EA 8 HOH G 2 202 857 HOH HOH . EA 8 HOH G 3 203 597 HOH HOH . EA 8 HOH G 4 204 43 HOH HOH . EA 8 HOH G 5 205 1552 HOH HOH . EA 8 HOH G 6 206 264 HOH HOH . EA 8 HOH G 7 207 281 HOH HOH . EA 8 HOH G 8 208 1182 HOH HOH . EA 8 HOH G 9 209 57 HOH HOH . EA 8 HOH G 10 210 1425 HOH HOH . EA 8 HOH G 11 211 3000 HOH HOH . EA 8 HOH G 12 212 1174 HOH HOH . FA 8 HOH H 1 301 66 HOH HOH . FA 8 HOH H 2 302 111 HOH HOH . FA 8 HOH H 3 303 83 HOH HOH . FA 8 HOH H 4 304 54 HOH HOH . FA 8 HOH H 5 305 454 HOH HOH . FA 8 HOH H 6 306 888 HOH HOH . FA 8 HOH H 7 307 262 HOH HOH . FA 8 HOH H 8 308 374 HOH HOH . FA 8 HOH H 9 309 1039 HOH HOH . FA 8 HOH H 10 310 872 HOH HOH . FA 8 HOH H 11 311 2240 HOH HOH . FA 8 HOH H 12 312 1193 HOH HOH . FA 8 HOH H 13 313 550 HOH HOH . GA 8 HOH I 1 401 3174 HOH HOH . GA 8 HOH I 2 402 200 HOH HOH . GA 8 HOH I 3 403 554 HOH HOH . GA 8 HOH I 4 404 335 HOH HOH . GA 8 HOH I 5 405 3224 HOH HOH . GA 8 HOH I 6 406 2195 HOH HOH . GA 8 HOH I 7 407 1947 HOH HOH . GA 8 HOH I 8 408 7 HOH HOH . GA 8 HOH I 9 409 1327 HOH HOH . GA 8 HOH I 10 410 91 HOH HOH . GA 8 HOH I 11 411 127 HOH HOH . GA 8 HOH I 12 412 129 HOH HOH . GA 8 HOH I 13 413 491 HOH HOH . GA 8 HOH I 14 414 184 HOH HOH . GA 8 HOH I 15 415 368 HOH HOH . GA 8 HOH I 16 416 2094 HOH HOH . GA 8 HOH I 17 417 213 HOH HOH . GA 8 HOH I 18 418 2746 HOH HOH . GA 8 HOH I 19 419 930 HOH HOH . GA 8 HOH I 20 420 451 HOH HOH . GA 8 HOH I 21 421 972 HOH HOH . GA 8 HOH I 22 422 166 HOH HOH . GA 8 HOH I 23 423 3164 HOH HOH . GA 8 HOH I 24 424 1198 HOH HOH . GA 8 HOH I 25 425 414 HOH HOH . GA 8 HOH I 26 426 2779 HOH HOH . GA 8 HOH I 27 427 775 HOH HOH . GA 8 HOH I 28 428 185 HOH HOH . GA 8 HOH I 29 429 820 HOH HOH . HA 8 HOH J 1 201 37 HOH HOH . HA 8 HOH J 2 202 384 HOH HOH . HA 8 HOH J 3 203 1120 HOH HOH . HA 8 HOH J 4 204 1239 HOH HOH . HA 8 HOH J 5 205 1127 HOH HOH . HA 8 HOH J 6 206 89 HOH HOH . HA 8 HOH J 7 207 118 HOH HOH . HA 8 HOH J 8 208 535 HOH HOH . HA 8 HOH J 9 209 93 HOH HOH . HA 8 HOH J 10 210 181 HOH HOH . HA 8 HOH J 11 211 417 HOH HOH . HA 8 HOH J 12 212 692 HOH HOH . HA 8 HOH J 13 213 23 HOH HOH . HA 8 HOH J 14 214 105 HOH HOH . HA 8 HOH J 15 215 124 HOH HOH . HA 8 HOH J 16 216 164 HOH HOH . HA 8 HOH J 17 217 1051 HOH HOH . HA 8 HOH J 18 218 233 HOH HOH . HA 8 HOH J 19 219 830 HOH HOH . HA 8 HOH J 20 220 266 HOH HOH . HA 8 HOH J 21 221 15 HOH HOH . HA 8 HOH J 22 222 3500 HOH HOH . HA 8 HOH J 23 223 3231 HOH HOH . HA 8 HOH J 24 224 3523 HOH HOH . HA 8 HOH J 25 225 519 HOH HOH . HA 8 HOH J 26 226 21 HOH HOH . HA 8 HOH J 27 227 2208 HOH HOH . HA 8 HOH J 28 228 774 HOH HOH . HA 8 HOH J 29 229 2163 HOH HOH . IA 8 HOH K 1 301 70 HOH HOH . IA 8 HOH K 2 302 135 HOH HOH . IA 8 HOH K 3 303 1580 HOH HOH . IA 8 HOH K 4 304 12 HOH HOH . IA 8 HOH K 5 305 2869 HOH HOH . IA 8 HOH K 6 306 678 HOH HOH . IA 8 HOH K 7 307 318 HOH HOH . IA 8 HOH K 8 308 944 HOH HOH . IA 8 HOH K 9 309 31 HOH HOH . IA 8 HOH K 10 310 861 HOH HOH . IA 8 HOH K 11 311 768 HOH HOH . IA 8 HOH K 12 312 59 HOH HOH . IA 8 HOH K 13 313 112 HOH HOH . IA 8 HOH K 14 314 4 HOH HOH . IA 8 HOH K 15 315 79 HOH HOH . IA 8 HOH K 16 316 3343 HOH HOH . IA 8 HOH K 17 317 421 HOH HOH . IA 8 HOH K 18 318 924 HOH HOH . IA 8 HOH K 19 319 572 HOH HOH . IA 8 HOH K 20 320 1457 HOH HOH . IA 8 HOH K 21 321 162 HOH HOH . JA 8 HOH L 1 401 32 HOH HOH . JA 8 HOH L 2 402 5 HOH HOH . JA 8 HOH L 3 403 1330 HOH HOH . JA 8 HOH L 4 404 53 HOH HOH . JA 8 HOH L 5 405 1043 HOH HOH . JA 8 HOH L 6 406 17 HOH HOH . JA 8 HOH L 7 407 1884 HOH HOH . JA 8 HOH L 8 408 1053 HOH HOH . JA 8 HOH L 9 409 317 HOH HOH . JA 8 HOH L 10 410 2 HOH HOH . JA 8 HOH L 11 411 47 HOH HOH . JA 8 HOH L 12 412 695 HOH HOH . JA 8 HOH L 13 413 16 HOH HOH . JA 8 HOH L 14 414 1244 HOH HOH . JA 8 HOH L 15 415 9 HOH HOH . JA 8 HOH L 16 416 11 HOH HOH . JA 8 HOH L 17 417 2909 HOH HOH . JA 8 HOH L 18 418 530 HOH HOH . JA 8 HOH L 19 419 911 HOH HOH . JA 8 HOH L 20 420 226 HOH HOH . JA 8 HOH L 21 421 2934 HOH HOH . JA 8 HOH L 22 422 525 HOH HOH . JA 8 HOH L 23 423 643 HOH HOH . JA 8 HOH L 24 424 1015 HOH HOH . JA 8 HOH L 25 425 631 HOH HOH . JA 8 HOH L 26 426 467 HOH HOH . JA 8 HOH L 27 427 2344 HOH HOH . JA 8 HOH L 28 428 989 HOH HOH . JA 8 HOH L 29 429 2772 HOH HOH . JA 8 HOH L 30 430 6 HOH HOH . JA 8 HOH L 31 431 3050 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . U 6 37.615 -75.61 -1.25 1 92.09 ? S DMS 301 I 1 HETATM 2 O O DMS . . . U 6 38.672 -75.897 -2.298 1 79.6 ? O DMS 301 I 1 HETATM 3 C C1 DMS . . . U 6 36.735 -74.1 -1.689 1 63.98 ? C1 DMS 301 I 1 HETATM 4 C C2 DMS . . . U 6 38.417 -75.035 0.264 1 70.95 ? C2 DMS 301 I 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #