data_9OMT
#
_model_server_result.job_id            1y1qVxc6DAMNO5D1O3Ya4w 
_model_server_result.datetime_utc      '2025-08-03 16:45:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9omt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    9OMT 
#
_exptl.entry_id    9OMT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              327.379 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-2-(hydroxyimino)-N-{3-[(3R)-3-(2-{[(2E)-2-(hydroxyimino)acetyl]amino}ethyl)piperidin-1-yl]propyl}acetamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9OMT 
_cell.length_a            124.367 
_cell.length_b            124.367 
_cell.length_c            128.389 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9OMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.1835 -107.704981 42.796333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A OG SER 206 A SER 203 1_555 C P DEP . A DEP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
covale ? covale2 B OG SER 206 B SER 203 1_555 H P DEP . B DEP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
#
_chem_comp.formula           'C14 H25 N5 O4' 
_chem_comp.formula_weight    327.379 
_chem_comp.id                A1CDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-2-(hydroxyimino)-N-{3-[(3R)-3-(2-{[(2E)-2-(hydroxyimino)acetyl]amino}ethyl)piperidin-1-yl]propyl}acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O20 N17 A1CDA sing 1 n n 
N17 C15 A1CDA doub 2 e n 
O16 C11 A1CDA doub 3 n n 
C15 C11 A1CDA sing 4 n n 
C11 N9 A1CDA sing 5 n n 
N9 C8 A1CDA sing 6 n n 
C8 C7 A1CDA sing 7 n n 
C7 C3 A1CDA sing 8 n n 
C3 C2 A1CDA sing 9 n n 
C3 C4 A1CDA sing 10 n n 
C2 C1 A1CDA sing 11 n n 
C1 C6 A1CDA sing 12 n n 
C4 N5 A1CDA sing 13 n n 
C40 N5 A1CDA sing 14 n n 
C40 C43 A1CDA sing 15 n n 
N5 C6 A1CDA sing 16 n n 
C43 C46 A1CDA sing 17 n n 
C46 N10 A1CDA sing 18 n n 
N10 C12 A1CDA sing 19 n n 
C12 C13 A1CDA sing 20 n n 
C12 O14 A1CDA doub 21 n n 
C13 N18 A1CDA doub 22 e n 
N18 O19 A1CDA sing 23 n n 
C2 H1 A1CDA sing 24 n n 
C2 H2 A1CDA sing 25 n n 
C1 H3 A1CDA sing 26 n n 
C1 H4 A1CDA sing 27 n n 
C4 H5 A1CDA sing 28 n n 
C4 H6 A1CDA sing 29 n n 
C8 H7 A1CDA sing 30 n n 
C8 H8 A1CDA sing 31 n n 
C7 H9 A1CDA sing 32 n n 
C7 H10 A1CDA sing 33 n n 
C13 H11 A1CDA sing 34 n n 
C15 H13 A1CDA sing 35 n n 
C3 H15 A1CDA sing 36 n n 
C40 H16 A1CDA sing 37 n n 
C40 H17 A1CDA sing 38 n n 
C43 H18 A1CDA sing 39 n n 
C43 H19 A1CDA sing 40 n n 
C46 H20 A1CDA sing 41 n n 
C46 H21 A1CDA sing 42 n n 
C6 H22 A1CDA sing 43 n n 
C6 H23 A1CDA sing 44 n n 
N10 H24 A1CDA sing 45 n n 
N9 H28 A1CDA sing 46 n n 
O19 H29 A1CDA sing 47 n n 
O20 H30 A1CDA sing 48 n n 
#
_atom_sites.entry_id                     9OMT 
_atom_sites.fract_transf_matrix[1][1]    0.008041 
_atom_sites.fract_transf_matrix[1][2]    0.004642 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007789 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DEP A 1 601 600 DEP DEP . 
D 3 GOL A 1 602 2 GOL GOL . 
E 4 NO3 A 1 603 1 NO3 NO3 . 
F 5 A1CDA A 1 604 604 A1CDA L22 . 
G 6 DMS A 1 605 503 DMS DMS . 
H 2 DEP B 1 601 600 DEP DEP . 
I 3 GOL B 1 602 4 GOL GOL . 
J 5 A1CDA B 1 603 605 A1CDA L22 . 
K 6 DMS B 1 604 504 DMS DMS . 
L 7 HOH A 1 701 119 HOH HOH . 
L 7 HOH A 2 702 86 HOH HOH . 
L 7 HOH A 3 703 16 HOH HOH . 
L 7 HOH A 4 704 61 HOH HOH . 
L 7 HOH A 5 705 26 HOH HOH . 
L 7 HOH A 6 706 17 HOH HOH . 
L 7 HOH A 7 707 47 HOH HOH . 
L 7 HOH A 8 708 41 HOH HOH . 
L 7 HOH A 9 709 9 HOH HOH . 
L 7 HOH A 10 710 19 HOH HOH . 
L 7 HOH A 11 711 78 HOH HOH . 
L 7 HOH A 12 712 6 HOH HOH . 
L 7 HOH A 13 713 108 HOH HOH . 
L 7 HOH A 14 714 34 HOH HOH . 
L 7 HOH A 15 715 79 HOH HOH . 
L 7 HOH A 16 716 8 HOH HOH . 
L 7 HOH A 17 717 11 HOH HOH . 
L 7 HOH A 18 718 45 HOH HOH . 
L 7 HOH A 19 719 72 HOH HOH . 
L 7 HOH A 20 720 37 HOH HOH . 
L 7 HOH A 21 721 105 HOH HOH . 
L 7 HOH A 22 722 112 HOH HOH . 
L 7 HOH A 23 723 69 HOH HOH . 
L 7 HOH A 24 724 68 HOH HOH . 
L 7 HOH A 25 725 115 HOH HOH . 
L 7 HOH A 26 726 84 HOH HOH . 
L 7 HOH A 27 727 10 HOH HOH . 
L 7 HOH A 28 728 20 HOH HOH . 
L 7 HOH A 29 729 55 HOH HOH . 
L 7 HOH A 30 730 98 HOH HOH . 
L 7 HOH A 31 731 23 HOH HOH . 
L 7 HOH A 32 732 118 HOH HOH . 
L 7 HOH A 33 733 90 HOH HOH . 
L 7 HOH A 34 734 81 HOH HOH . 
L 7 HOH A 35 735 51 HOH HOH . 
L 7 HOH A 36 736 29 HOH HOH . 
L 7 HOH A 37 737 101 HOH HOH . 
L 7 HOH A 38 738 93 HOH HOH . 
L 7 HOH A 39 739 113 HOH HOH . 
L 7 HOH A 40 740 71 HOH HOH . 
L 7 HOH A 41 741 40 HOH HOH . 
L 7 HOH A 42 742 42 HOH HOH . 
L 7 HOH A 43 743 91 HOH HOH . 
L 7 HOH A 44 744 65 HOH HOH . 
L 7 HOH A 45 745 74 HOH HOH . 
L 7 HOH A 46 746 44 HOH HOH . 
L 7 HOH A 47 747 100 HOH HOH . 
L 7 HOH A 48 748 58 HOH HOH . 
L 7 HOH A 49 749 114 HOH HOH . 
L 7 HOH A 50 750 89 HOH HOH . 
L 7 HOH A 51 751 99 HOH HOH . 
L 7 HOH A 52 752 116 HOH HOH . 
M 7 HOH B 1 701 87 HOH HOH . 
M 7 HOH B 2 702 94 HOH HOH . 
M 7 HOH B 3 703 38 HOH HOH . 
M 7 HOH B 4 704 7 HOH HOH . 
M 7 HOH B 5 705 32 HOH HOH . 
M 7 HOH B 6 706 109 HOH HOH . 
M 7 HOH B 7 707 57 HOH HOH . 
M 7 HOH B 8 708 33 HOH HOH . 
M 7 HOH B 9 709 5 HOH HOH . 
M 7 HOH B 10 710 14 HOH HOH . 
M 7 HOH B 11 711 107 HOH HOH . 
M 7 HOH B 12 712 25 HOH HOH . 
M 7 HOH B 13 713 24 HOH HOH . 
M 7 HOH B 14 714 4 HOH HOH . 
M 7 HOH B 15 715 3 HOH HOH . 
M 7 HOH B 16 716 50 HOH HOH . 
M 7 HOH B 17 717 60 HOH HOH . 
M 7 HOH B 18 718 96 HOH HOH . 
M 7 HOH B 19 719 36 HOH HOH . 
M 7 HOH B 20 720 48 HOH HOH . 
M 7 HOH B 21 721 43 HOH HOH . 
M 7 HOH B 22 722 39 HOH HOH . 
M 7 HOH B 23 723 117 HOH HOH . 
M 7 HOH B 24 724 35 HOH HOH . 
M 7 HOH B 25 725 111 HOH HOH . 
M 7 HOH B 26 726 110 HOH HOH . 
M 7 HOH B 27 727 73 HOH HOH . 
M 7 HOH B 28 728 12 HOH HOH . 
M 7 HOH B 29 729 63 HOH HOH . 
M 7 HOH B 30 730 52 HOH HOH . 
M 7 HOH B 31 731 15 HOH HOH . 
M 7 HOH B 32 732 70 HOH HOH . 
M 7 HOH B 33 733 64 HOH HOH . 
M 7 HOH B 34 734 59 HOH HOH . 
M 7 HOH B 35 735 54 HOH HOH . 
M 7 HOH B 36 736 75 HOH HOH . 
M 7 HOH B 37 737 13 HOH HOH . 
M 7 HOH B 38 738 83 HOH HOH . 
M 7 HOH B 39 739 22 HOH HOH . 
M 7 HOH B 40 740 18 HOH HOH . 
M 7 HOH B 41 741 31 HOH HOH . 
M 7 HOH B 42 742 28 HOH HOH . 
M 7 HOH B 43 743 53 HOH HOH . 
M 7 HOH B 44 744 21 HOH HOH . 
M 7 HOH B 45 745 102 HOH HOH . 
M 7 HOH B 46 746 92 HOH HOH . 
M 7 HOH B 47 747 49 HOH HOH . 
M 7 HOH B 48 748 56 HOH HOH . 
M 7 HOH B 49 749 88 HOH HOH . 
M 7 HOH B 50 750 97 HOH HOH . 
M 7 HOH B 51 751 30 HOH HOH . 
M 7 HOH B 52 752 95 HOH HOH . 
M 7 HOH B 53 753 46 HOH HOH . 
M 7 HOH B 54 754 67 HOH HOH . 
M 7 HOH B 55 755 62 HOH HOH . 
M 7 HOH B 56 756 76 HOH HOH . 
M 7 HOH B 57 757 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 A1CDA . . . J 5 26.41 -55.138 -3.214 1 93.15 ? C2 A1CDA 603 B 1 
HETATM 2 C C1 A1CDA . . . J 5 26.293 -56.532 -3.847 1 80.68 ? C1 A1CDA 603 B 1 
HETATM 3 C C4 A1CDA . . . J 5 28.852 -55.498 -2.737 1 104.58 ? C4 A1CDA 603 B 1 
HETATM 4 C C8 A1CDA . . . J 5 27.23 -53.759 0.092 1 101.72 ? C8 A1CDA 603 B 1 
HETATM 5 C C7 A1CDA . . . J 5 27.538 -53.721 -1.418 1 85.79 ? C7 A1CDA 603 B 1 
HETATM 6 C C11 A1CDA . . . J 5 28.142 -52.814 2.225 1 112.59 ? C11 A1CDA 603 B 1 
HETATM 7 C C12 A1CDA . . . J 5 31.291 -59.32 -8.406 1 58.55 ? C12 A1CDA 603 B 1 
HETATM 8 C C13 A1CDA . . . J 5 29.92 -59.636 -8.898 1 55.79 ? C13 A1CDA 603 B 1 
HETATM 9 C C15 A1CDA . . . J 5 26.8 -53.137 2.817 1 111.71 ? C15 A1CDA 603 B 1 
HETATM 10 C C3 A1CDA . . . J 5 27.494 -55.094 -2.122 1 99.48 ? C3 A1CDA 603 B 1 
HETATM 11 C C40 A1CDA . . . J 5 30.005 -56.635 -4.578 1 71.73 ? C40 A1CDA 603 B 1 
HETATM 12 C C43 A1CDA . . . J 5 30.275 -56.482 -6.089 1 67.67 ? C43 A1CDA 603 B 1 
HETATM 13 C C46 A1CDA . . . J 5 30.049 -57.772 -6.897 1 75.22 ? C46 A1CDA 603 B 1 
HETATM 14 C C6 A1CDA . . . J 5 27.669 -57.173 -4.06 1 89.04 ? C6 A1CDA 603 B 1 
HETATM 15 N N10 A1CDA . . . J 5 31.275 -58.386 -7.412 1 72.52 ? N10 A1CDA 603 B 1 
HETATM 16 N N17 A1CDA . . . J 5 26.636 -52.926 4.073 1 101.37 ? N17 A1CDA 603 B 1 
HETATM 17 N N18 A1CDA . . . J 5 29.54 -60.848 -8.777 1 74.74 ? N18 A1CDA 603 B 1 
HETATM 18 N N5 A1CDA . . . J 5 28.726 -56.158 -4.044 1 89.99 ? N5 A1CDA 603 B 1 
HETATM 19 N N9 A1CDA . . . J 5 28.274 -53.143 0.907 1 114.91 ? N9 A1CDA 603 B 1 
HETATM 20 O O14 A1CDA . . . J 5 32.301 -59.863 -8.867 1 56.76 ? O14 A1CDA 603 B 1 
HETATM 21 O O16 A1CDA . . . J 5 29.047 -52.293 2.886 1 83.64 ? O16 A1CDA 603 B 1 
HETATM 22 O O19 A1CDA . . . J 5 28.258 -60.997 -9.27 1 82.6 ? O19 A1CDA 603 B 1 
HETATM 23 O O20 A1CDA . . . J 5 25.359 -53.26 4.509 1 81.13 ? O20 A1CDA 603 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           1093 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           23 
#