data_9OOI
#
_model_server_result.job_id            PEaHkiAa4WdF77aX_e1Flw 
_model_server_result.datetime_utc      '2025-08-27 18:50:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ooi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    9OOI 
#
_exptl.entry_id    9OOI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9OOI 
_cell.length_a            134.168 
_cell.length_b            232.027 
_cell.length_c            75.645 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9OOI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E 1 1 
B,F,G 2 1 
C,H,I,J 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     9OOI 
_atom_sites.fract_transf_matrix[1][1]    0.007453 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAP A 1 301 301 NAP NAP . 
E 3 OG7 A 1 302 900 OG7 0G7 . 
F 2 NAP B 1 301 301 NAP NAP . 
G 3 OG7 B 1 302 900 OG7 0G7 . 
H 2 NAP C 1 301 301 NAP NAP . 
I 3 OG7 C 1 302 900 OG7 0G7 . 
J 4 HOH C 1 401 10 HOH HOH . 
J 4 HOH C 2 402 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 2 56.909 26.534 8.459 1 10.93 ? PA NAP 301 C 1 
HETATM 2 O O1A NAP . . . H 2 56.456 26.274 9.86 1 10.95 ? O1A NAP 301 C 1 
HETATM 3 O O2A NAP . . . H 2 56.64 25.583 7.339 1 12.88 ? O2A NAP 301 C 1 
HETATM 4 O O5B NAP . . . H 2 56.308 28.003 8.091 1 11.59 ? O5B NAP 301 C 1 
HETATM 5 C C5B NAP . . . H 2 56.463 29.021 9.048 1 11.9 ? C5B NAP 301 C 1 
HETATM 6 C C4B NAP . . . H 2 55.328 30.006 8.849 1 14.62 ? C4B NAP 301 C 1 
HETATM 7 O O4B NAP . . . H 2 54.084 29.346 9.084 1 17.05 ? O4B NAP 301 C 1 
HETATM 8 C C3B NAP . . . H 2 55.367 31.198 9.814 1 8.79 ? C3B NAP 301 C 1 
HETATM 9 O O3B NAP . . . H 2 56.2 32.233 9.389 1 12.76 ? O3B NAP 301 C 1 
HETATM 10 C C2B NAP . . . H 2 53.872 31.564 9.842 1 10.6 ? C2B NAP 301 C 1 
HETATM 11 O O2B NAP . . . H 2 53.534 32.187 8.645 1 9.3 ? O2B NAP 301 C 1 
HETATM 12 C C1B NAP . . . H 2 53.207 30.189 9.787 1 15.82 ? C1B NAP 301 C 1 
HETATM 13 N N9A NAP . . . H 2 52.814 29.624 11.069 1 16 ? N9A NAP 301 C 1 
HETATM 14 C C8A NAP . . . H 2 53.386 28.626 11.814 1 19.34 ? C8A NAP 301 C 1 
HETATM 15 N N7A NAP . . . H 2 52.746 28.376 12.919 1 22.42 ? N7A NAP 301 C 1 
HETATM 16 C C5A NAP . . . H 2 51.693 29.252 12.91 1 25.06 ? C5A NAP 301 C 1 
HETATM 17 C C6A NAP . . . H 2 50.639 29.494 13.808 1 25.12 ? C6A NAP 301 C 1 
HETATM 18 N N6A NAP . . . H 2 50.494 28.815 14.947 1 30.84 ? N6A NAP 301 C 1 
HETATM 19 N N1A NAP . . . H 2 49.751 30.445 13.495 1 21.25 ? N1A NAP 301 C 1 
HETATM 20 C C2A NAP . . . H 2 49.9 31.119 12.358 1 14.45 ? C2A NAP 301 C 1 
HETATM 21 N N3A NAP . . . H 2 50.842 30.985 11.442 1 12.04 ? N3A NAP 301 C 1 
HETATM 22 C C4A NAP . . . H 2 51.715 30.033 11.767 1 17.84 ? C4A NAP 301 C 1 
HETATM 23 O O3 NAP . . . H 2 58.524 26.842 8.385 1 11.66 ? O3 NAP 301 C 1 
HETATM 24 P PN NAP . . . H 2 59.776 25.85 8.762 1 11.27 ? PN NAP 301 C 1 
HETATM 25 O O1N NAP . . . H 2 61.064 26.438 8.297 1 14.91 ? O1N NAP 301 C 1 
HETATM 26 O O2N NAP . . . H 2 59.554 25.451 10.187 1 15.55 ? O2N NAP 301 C 1 
HETATM 27 O O5D NAP . . . H 2 59.472 24.559 7.777 1 17.46 ? O5D NAP 301 C 1 
HETATM 28 C C5D NAP . . . H 2 59.777 24.573 6.407 1 15.13 ? C5D NAP 301 C 1 
HETATM 29 C C4D NAP . . . H 2 61.201 24.123 6.085 1 12.82 ? C4D NAP 301 C 1 
HETATM 30 O O4D NAP . . . H 2 61.375 22.76 6.539 1 13.18 ? O4D NAP 301 C 1 
HETATM 31 C C3D NAP . . . H 2 61.528 24.039 4.609 1 13.85 ? C3D NAP 301 C 1 
HETATM 32 O O3D NAP . . . H 2 62.925 23.967 4.511 1 15.48 ? O3D NAP 301 C 1 
HETATM 33 C C2D NAP . . . H 2 60.902 22.688 4.247 1 12.68 ? C2D NAP 301 C 1 
HETATM 34 O O2D NAP . . . H 2 61.376 22.083 3.085 1 14.07 ? O2D NAP 301 C 1 
HETATM 35 C C1D NAP . . . H 2 61.353 21.887 5.471 1 12.59 ? C1D NAP 301 C 1 
HETATM 36 N N1N NAP . . . H 2 60.453 20.723 5.739 1 14.17 ? N1N NAP 301 C 1 
HETATM 37 C C2N NAP . . . H 2 60.912 19.476 5.593 1 13.28 ? C2N NAP 301 C 1 
HETATM 38 C C3N NAP . . . H 2 60.107 18.387 5.836 1 12.26 ? C3N NAP 301 C 1 
HETATM 39 C C7N NAP . . . H 2 60.618 16.982 5.676 1 15.26 ? C7N NAP 301 C 1 
HETATM 40 O O7N NAP . . . H 2 59.885 16.039 5.917 1 17.06 ? O7N NAP 301 C 1 
HETATM 41 N N7N NAP . . . H 2 61.888 16.873 5.279 1 16.63 ? N7N NAP 301 C 1 
HETATM 42 C C4N NAP . . . H 2 58.799 18.613 6.245 1 13.16 ? C4N NAP 301 C 1 
HETATM 43 C C5N NAP . . . H 2 58.346 19.913 6.391 1 15.16 ? C5N NAP 301 C 1 
HETATM 44 C C6N NAP . . . H 2 59.198 20.962 6.134 1 13.63 ? C6N NAP 301 C 1 
HETATM 45 P P2B NAP . . . H 2 53.859 33.868 8.39 1 15.27 ? P2B NAP 301 C 1 
HETATM 46 O O1X NAP . . . H 2 55.363 33.903 8.162 1 11.84 ? O1X NAP 301 C 1 
HETATM 47 O O2X NAP . . . H 2 53.356 34.456 9.697 1 19.69 ? O2X NAP 301 C 1 
HETATM 48 O O3X NAP . . . H 2 53.025 34.193 7.159 1 17.18 ? O3X NAP 301 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           469 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#