data_9ORL
#
_model_server_result.job_id            Gyy3MCROtD0q-q66UImeGg 
_model_server_result.datetime_utc      '2025-08-15 20:26:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9orl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    9ORL 
#
_exptl.entry_id    9ORL 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              267.26 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.95 
_cell.angle_gamma         90 
_cell.entry_id            9ORL 
_cell.length_a            44.99 
_cell.length_b            105.7 
_cell.length_c            47.49 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9ORL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 45 A SER 70 1_555 C CAN NXL . A NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? 
covale ? covale2 B OG SER 45 B SER 70 1_555 D CAN NXL . B NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
#
_chem_comp.formula           'C7 H13 N3 O6 S' 
_chem_comp.formula_weight    267.26 
_chem_comp.id                NXL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'avibactam, bound form;NXL104, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAK CAO NXL sing 237 n n 
CAJ CAO NXL sing 238 n n 
CAJ N NXL sing 239 n n 
OAL SAR NXL sing 240 n n 
CAO CAH NXL sing 241 n n 
CAN N NXL sing 242 n n 
CAN OAC NXL doub 243 n n 
OAG SAR NXL doub 244 n n 
N CA NXL sing 245 n n 
SAR OAE NXL doub 246 n n 
SAR OAD NXL sing 247 n n 
O C NXL doub 248 n n 
CAH CB NXL sing 249 n n 
CA C NXL sing 250 n n 
CA CB NXL sing 251 n n 
C NAA NXL sing 252 n n 
NAK OAL NXL sing 253 n n 
CAN H1 NXL sing 254 n n 
CAJ H2 NXL sing 255 n n 
CAJ H3 NXL sing 256 n n 
CA H4 NXL sing 257 n n 
NAA H5 NXL sing 258 n n 
NAA H6 NXL sing 259 n n 
CB H7 NXL sing 260 n n 
CB H8 NXL sing 261 n n 
CAH H9 NXL sing 262 n n 
CAH H10 NXL sing 263 n n 
CAO H11 NXL sing 264 n n 
NAK H12 NXL sing 265 n n 
OAD H13 NXL sing 266 n n 
#
_atom_sites.entry_id                     9ORL 
_atom_sites.fract_transf_matrix[1][1]    0.022227 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0043 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021448 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NXL A 1 301 301 NXL LIG . 
D 2 NXL B 1 301 301 NXL LIG . 
E 3 HOH A 1 401 19 HOH HOH . 
E 3 HOH A 2 402 4 HOH HOH . 
E 3 HOH A 3 403 15 HOH HOH . 
E 3 HOH A 4 404 1 HOH HOH . 
E 3 HOH A 5 405 7 HOH HOH . 
E 3 HOH A 6 406 18 HOH HOH . 
E 3 HOH A 7 407 10 HOH HOH . 
E 3 HOH A 8 408 17 HOH HOH . 
E 3 HOH A 9 409 11 HOH HOH . 
E 3 HOH A 10 410 5 HOH HOH . 
E 3 HOH A 11 411 20 HOH HOH . 
E 3 HOH A 12 412 25 HOH HOH . 
E 3 HOH A 13 413 27 HOH HOH . 
E 3 HOH A 14 414 24 HOH HOH . 
E 3 HOH A 15 415 21 HOH HOH . 
F 3 HOH B 1 401 12 HOH HOH . 
F 3 HOH B 2 402 26 HOH HOH . 
F 3 HOH B 3 403 14 HOH HOH . 
F 3 HOH B 4 404 13 HOH HOH . 
F 3 HOH B 5 405 23 HOH HOH . 
F 3 HOH B 6 406 3 HOH HOH . 
F 3 HOH B 7 407 28 HOH HOH . 
F 3 HOH B 8 408 8 HOH HOH . 
F 3 HOH B 9 409 16 HOH HOH . 
F 3 HOH B 10 410 2 HOH HOH . 
F 3 HOH B 11 411 22 HOH HOH . 
F 3 HOH B 12 412 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAC NXL . . . D 2 -21.17 17.834 -9.926 0.85 16.03 ? OAC NXL 301 B 1 
HETATM 2 C CAN NXL . . . D 2 -21.787 17.164 -9.12 0.85 15.62 ? CAN NXL 301 B 1 
HETATM 3 N N NXL . . . D 2 -22.85 16.392 -9.416 0.85 15.75 ? N NXL 301 B 1 
HETATM 4 C CAJ NXL . . . D 2 -23.28 15.293 -8.546 0.85 17.34 ? CAJ NXL 301 B 1 
HETATM 5 C CA NXL . . . D 2 -23.542 16.573 -10.704 0.85 15.49 ? CA NXL 301 B 1 
HETATM 6 C C NXL . . . D 2 -24.978 17.121 -10.554 0.85 18.45 ? C NXL 301 B 1 
HETATM 7 O O NXL . . . D 2 -25.585 17.072 -9.488 0.85 18.94 ? O NXL 301 B 1 
HETATM 8 N NAA NXL . . . D 2 -25.509 17.651 -11.646 0.85 22.51 ? NAA NXL 301 B 1 
HETATM 9 C CB NXL . . . D 2 -23.576 15.255 -11.476 0.85 11.38 ? CB NXL 301 B 1 
HETATM 10 C CAH NXL . . . D 2 -23.858 14.059 -10.564 0.85 17.24 ? CAH NXL 301 B 1 
HETATM 11 C CAO NXL . . . D 2 -22.931 14.037 -9.351 0.85 14.16 ? CAO NXL 301 B 1 
HETATM 12 N NAK NXL . . . D 2 -21.471 14.103 -9.599 0.85 12.99 ? NAK NXL 301 B 1 
HETATM 13 O OAL NXL . . . D 2 -21.02 14.351 -10.948 0.85 30.02 ? OAL NXL 301 B 1 
HETATM 14 S SAR NXL . . . D 2 -19.437 14.039 -11.158 0.85 27.48 ? SAR NXL 301 B 1 
HETATM 15 O OAD NXL . . . D 2 -18.765 14.764 -10.106 0.85 23.24 ? OAD NXL 301 B 1 
HETATM 16 O OAE NXL . . . D 2 -19.367 12.601 -11.048 0.85 24.18 ? OAE NXL 301 B 1 
HETATM 17 O OAG NXL . . . D 2 -19.214 14.559 -12.487 0.85 19.9 ? OAG NXL 301 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          30 
_model_server_stats.element_count           17 
#