data_9P4Y # _model_server_result.job_id yyuIrUfo7mf7rJXVhq10zQ _model_server_result.datetime_utc '2025-09-01 02:41:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9p4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9P4Y # _exptl.entry_id 9P4Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 1 n n O25 C24 9Z9 sing 2 n n C50 O49 9Z9 sing 3 n n O49 C48 9Z9 sing 4 n n C24 C23 9Z9 sing 5 n n C48 C23 9Z9 sing 6 n n C23 C22 9Z9 sing 7 n n C22 C21 9Z9 sing 8 n n C21 O20 9Z9 sing 9 n n O20 C17 9Z9 sing 10 n n C17 C18 9Z9 sing 11 n n C17 C16 9Z9 sing 12 n n C18 C19 9Z9 sing 13 n n C16 C13 9Z9 sing 14 n n C19 C11 9Z9 sing 15 n n C13 C11 9Z9 sing 16 n n C13 C14 9Z9 doub 17 n n C11 C12 9Z9 sing 18 n n C11 C08 9Z9 sing 19 n n C14 C15 9Z9 sing 20 n n C08 C09 9Z9 sing 21 n n C08 C07 9Z9 sing 22 n n C15 C07 9Z9 sing 23 n n C09 C10 9Z9 sing 24 n n C07 C06 9Z9 sing 25 n n C10 C02 9Z9 sing 26 n n C06 C02 9Z9 sing 27 n n C06 C05 9Z9 sing 28 n n C02 C01 9Z9 sing 29 n n C02 C03 9Z9 sing 30 n n C05 C04 9Z9 sing 31 n n C03 C04 9Z9 sing 32 n n C03 C74 9Z9 sing 33 n n C04 O72 9Z9 sing 34 n n C74 C75 9Z9 sing 35 n n C74 C73 9Z9 sing 36 n n O72 C73 9Z9 sing 37 n n C73 O80 9Z9 sing 38 n n C73 C76 9Z9 sing 39 n n O80 C79 9Z9 sing 40 n n C76 C77 9Z9 sing 41 n n C79 C78 9Z9 sing 42 n n C77 C78 9Z9 sing 43 n n C78 C81 9Z9 sing 44 n n C01 H1 9Z9 sing 45 n n C01 H2 9Z9 sing 46 n n C01 H3 9Z9 sing 47 n n C03 H4 9Z9 sing 48 n n C04 H5 9Z9 sing 49 n n C05 H6 9Z9 sing 50 n n C05 H7 9Z9 sing 51 n n C06 H8 9Z9 sing 52 n n C07 H9 9Z9 sing 53 n n C08 H10 9Z9 sing 54 n n C09 H11 9Z9 sing 55 n n C09 H12 9Z9 sing 56 n n C10 H13 9Z9 sing 57 n n C10 H14 9Z9 sing 58 n n C12 H15 9Z9 sing 59 n n C12 H16 9Z9 sing 60 n n C12 H17 9Z9 sing 61 n n C14 H18 9Z9 sing 62 n n C15 H19 9Z9 sing 63 n n C15 H20 9Z9 sing 64 n n C16 H21 9Z9 sing 65 n n C16 H22 9Z9 sing 66 n n C17 H23 9Z9 sing 67 n n C18 H24 9Z9 sing 68 n n C18 H25 9Z9 sing 69 n n C19 H26 9Z9 sing 70 n n C19 H27 9Z9 sing 71 n n C21 H28 9Z9 sing 72 n n C21 H29 9Z9 sing 73 n n C22 H30 9Z9 sing 74 n n C22 H31 9Z9 sing 75 n n C23 H32 9Z9 sing 76 n n C24 H33 9Z9 sing 77 n n C24 H34 9Z9 sing 78 n n C26 H35 9Z9 sing 79 n n C26 H36 9Z9 sing 80 n n C26 H37 9Z9 sing 81 n n C48 H38 9Z9 sing 82 n n C48 H39 9Z9 sing 83 n n C50 H40 9Z9 sing 84 n n C50 H41 9Z9 sing 85 n n C50 H42 9Z9 sing 86 n n C74 H43 9Z9 sing 87 n n C75 H44 9Z9 sing 88 n n C75 H45 9Z9 sing 89 n n C75 H46 9Z9 sing 90 n n C76 H47 9Z9 sing 91 n n C76 H48 9Z9 sing 92 n n C77 H49 9Z9 sing 93 n n C77 H50 9Z9 sing 94 n n C78 H51 9Z9 sing 95 n n C79 H52 9Z9 sing 96 n n C79 H53 9Z9 sing 97 n n C81 H54 9Z9 sing 98 n n C81 H55 9Z9 sing 99 n n C81 H56 9Z9 sing 100 n n # _atom_sites.entry_id 9P4Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1CG9 A 1 601 603 A1CG9 LIG . C 3 9Z9 A 1 602 615 9Z9 9Z9 . D 4 CLR A 1 603 616 CLR CLR . E 4 CLR A 1 604 617 CLR CLR . F 5 HOH A 1 701 613 HOH HOH . F 5 HOH A 2 702 611 HOH HOH . F 5 HOH A 3 703 610 HOH HOH . F 5 HOH A 4 704 612 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . C 3 152.893 121.83 134.144 1 40.35 ? C01 9Z9 602 A 1 HETATM 2 C C02 9Z9 . . . C 3 152.693 120.333 133.935 1 39.16 ? C02 9Z9 602 A 1 HETATM 3 C C03 9Z9 . . . C 3 152.811 119.899 132.454 1 38.77 ? C03 9Z9 602 A 1 HETATM 4 C C04 9Z9 . . . C 3 154.315 119.547 132.275 1 36.2 ? C04 9Z9 602 A 1 HETATM 5 C C05 9Z9 . . . C 3 154.995 119.787 133.619 1 39.66 ? C05 9Z9 602 A 1 HETATM 6 C C06 9Z9 . . . C 3 153.82 119.486 134.546 1 39.21 ? C06 9Z9 602 A 1 HETATM 7 C C07 9Z9 . . . C 3 153.981 119.663 136.046 1 35.32 ? C07 9Z9 602 A 1 HETATM 8 C C08 9Z9 . . . C 3 152.639 119.349 136.744 1 40.02 ? C08 9Z9 602 A 1 HETATM 9 C C09 9Z9 . . . C 3 151.486 120.129 136.094 1 41.68 ? C09 9Z9 602 A 1 HETATM 10 C C10 9Z9 . . . C 3 151.407 119.879 134.594 1 37.18 ? C10 9Z9 602 A 1 HETATM 11 C C11 9Z9 . . . C 3 152.756 119.593 138.265 1 39.39 ? C11 9Z9 602 A 1 HETATM 12 C C12 9Z9 . . . C 3 152.85 121.093 138.581 1 42.03 ? C12 9Z9 602 A 1 HETATM 13 C C13 9Z9 . . . C 3 153.982 118.936 138.812 1 42.13 ? C13 9Z9 602 A 1 HETATM 14 C C14 9Z9 . . . C 3 155.005 118.53 138.036 1 39.45 ? C14 9Z9 602 A 1 HETATM 15 C C15 9Z9 . . . C 3 155.037 118.692 136.566 1 37.48 ? C15 9Z9 602 A 1 HETATM 16 C C16 9Z9 . . . C 3 154.052 118.731 140.277 1 38.33 ? C16 9Z9 602 A 1 HETATM 17 C C17 9Z9 . . . C 3 152.816 117.975 140.743 1 38.78 ? C17 9Z9 602 A 1 HETATM 18 C C18 9Z9 . . . C 3 151.587 118.832 140.442 1 36.64 ? C18 9Z9 602 A 1 HETATM 19 C C19 9Z9 . . . C 3 151.492 119.005 138.93 1 40.15 ? C19 9Z9 602 A 1 HETATM 20 O O20 9Z9 . . . C 3 152.903 117.804 142.15 1 41.09 ? O20 9Z9 602 A 1 HETATM 21 C C21 9Z9 . . . C 3 151.978 116.869 142.657 1 43.44 ? C21 9Z9 602 A 1 HETATM 22 C C22 9Z9 . . . C 3 152.364 116.455 144.082 1 41.14 ? C22 9Z9 602 A 1 HETATM 23 C C23 9Z9 . . . C 3 151.181 115.963 144.953 1 42.04 ? C23 9Z9 602 A 1 HETATM 24 C C24 9Z9 . . . C 3 150.139 115.113 144.185 1 40.49 ? C24 9Z9 602 A 1 HETATM 25 O O25 9Z9 . . . C 3 148.962 115.086 144.959 1 45.42 ? O25 9Z9 602 A 1 HETATM 26 C C26 9Z9 . . . C 3 148.115 114.022 144.63 1 44.97 ? C26 9Z9 602 A 1 HETATM 27 C C48 9Z9 . . . C 3 151.75 115.094 146.1 1 40.77 ? C48 9Z9 602 A 1 HETATM 28 O O49 9Z9 . . . C 3 152.418 115.977 146.978 1 48.58 ? O49 9Z9 602 A 1 HETATM 29 C C50 9Z9 . . . C 3 152.564 115.439 148.262 1 45.35 ? C50 9Z9 602 A 1 HETATM 30 O O72 9Z9 . . . C 3 154.812 120.406 131.268 1 44.75 ? O72 9Z9 602 A 1 HETATM 31 C C73 9Z9 . . . C 3 153.73 120.636 130.392 1 42.07 ? C73 9Z9 602 A 1 HETATM 32 C C74 9Z9 . . . C 3 152.522 120.89 131.325 1 37.98 ? C74 9Z9 602 A 1 HETATM 33 C C75 9Z9 . . . C 3 151.184 120.673 130.677 1 41.82 ? C75 9Z9 602 A 1 HETATM 34 C C76 9Z9 . . . C 3 154.059 121.836 129.517 1 38.21 ? C76 9Z9 602 A 1 HETATM 35 C C77 9Z9 . . . C 3 155.248 121.527 128.63 1 41.05 ? C77 9Z9 602 A 1 HETATM 36 C C78 9Z9 . . . C 3 155.035 120.217 127.878 1 41.26 ? C78 9Z9 602 A 1 HETATM 37 C C79 9Z9 . . . C 3 154.634 119.08 128.821 1 41.47 ? C79 9Z9 602 A 1 HETATM 38 O O80 9Z9 . . . C 3 153.628 119.41 129.719 1 43.67 ? O80 9Z9 602 A 1 HETATM 39 C C81 9Z9 . . . C 3 156.281 119.835 127.099 1 40.73 ? C81 9Z9 602 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #