data_9P4Z # _model_server_result.job_id 9GxKAyyXDwKQp_VR8L1cNA _model_server_result.datetime_utc '2025-09-10 03:38:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9p4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 9P4Z # _exptl.entry_id 9P4Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 100 A TYR 98 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc2 A OG1 THR 103 A THR 101 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A OG1 THR 104 A THR 102 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A O GLY 364 A GLY 362 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc5 A O ASN 368 A ASN 366 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 A OD1 ASN 368 A ASN 366 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 A OD1 ASP 370 A ASP 368 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 A OD2 ASP 370 A ASP 368 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? metalc ? metalc9 A O ASN 453 A ASN 451 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc10 A OD1 ASP 457 A ASP 455 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc11 A OD2 ASP 457 A ASP 455 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 170 n n C1 C10 CLR sing 171 n n C1 H11 CLR sing 172 n n C1 H12 CLR sing 173 n n C2 C3 CLR sing 174 n n C2 H21 CLR sing 175 n n C2 H22 CLR sing 176 n n C3 C4 CLR sing 177 n n C3 O1 CLR sing 178 n n C3 H3 CLR sing 179 n n C4 C5 CLR sing 180 n n C4 H41 CLR sing 181 n n C4 H42 CLR sing 182 n n C5 C6 CLR doub 183 n n C5 C10 CLR sing 184 n n C6 C7 CLR sing 185 n n C6 H6 CLR sing 186 n n C7 C8 CLR sing 187 n n C7 H71 CLR sing 188 n n C7 H72 CLR sing 189 n n C8 C9 CLR sing 190 n n C8 C14 CLR sing 191 n n C8 H8 CLR sing 192 n n C9 C10 CLR sing 193 n n C9 C11 CLR sing 194 n n C9 H9 CLR sing 195 n n C10 C19 CLR sing 196 n n C11 C12 CLR sing 197 n n C11 H111 CLR sing 198 n n C11 H112 CLR sing 199 n n C12 C13 CLR sing 200 n n C12 H121 CLR sing 201 n n C12 H122 CLR sing 202 n n C13 C14 CLR sing 203 n n C13 C17 CLR sing 204 n n C13 C18 CLR sing 205 n n C14 C15 CLR sing 206 n n C14 H14 CLR sing 207 n n C15 C16 CLR sing 208 n n C15 H151 CLR sing 209 n n C15 H152 CLR sing 210 n n C16 C17 CLR sing 211 n n C16 H161 CLR sing 212 n n C16 H162 CLR sing 213 n n C17 C20 CLR sing 214 n n C17 H17 CLR sing 215 n n C18 H181 CLR sing 216 n n C18 H182 CLR sing 217 n n C18 H183 CLR sing 218 n n C19 H191 CLR sing 219 n n C19 H192 CLR sing 220 n n C19 H193 CLR sing 221 n n C20 C21 CLR sing 222 n n C20 C22 CLR sing 223 n n C20 H20 CLR sing 224 n n C21 H211 CLR sing 225 n n C21 H212 CLR sing 226 n n C21 H213 CLR sing 227 n n C22 C23 CLR sing 228 n n C22 H221 CLR sing 229 n n C22 H222 CLR sing 230 n n C23 C24 CLR sing 231 n n C23 H231 CLR sing 232 n n C23 H232 CLR sing 233 n n C24 C25 CLR sing 234 n n C24 H241 CLR sing 235 n n C24 H242 CLR sing 236 n n C25 C26 CLR sing 237 n n C25 C27 CLR sing 238 n n C25 H25 CLR sing 239 n n C26 H261 CLR sing 240 n n C26 H262 CLR sing 241 n n C26 H263 CLR sing 242 n n C27 H271 CLR sing 243 n n C27 H272 CLR sing 244 n n C27 H273 CLR sing 245 n n O1 H1 CLR sing 246 n n # _atom_sites.entry_id 9P4Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 601 NA NA . C 2 NA A 1 602 603 NA NA . D 3 9Z9 A 1 603 604 9Z9 9Z9 . E 4 CLR A 1 604 605 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 4 156.53 132.806 140.28 1 37.71 ? C1 CLR 604 A 1 HETATM 2 C C2 CLR . . . E 4 156.097 133.175 141.682 1 39.47 ? C2 CLR 604 A 1 HETATM 3 C C3 CLR . . . E 4 154.605 133.333 141.796 1 35.95 ? C3 CLR 604 A 1 HETATM 4 C C4 CLR . . . E 4 153.935 132.029 141.34 1 33.69 ? C4 CLR 604 A 1 HETATM 5 C C5 CLR . . . E 4 154.364 131.589 139.96 1 35.75 ? C5 CLR 604 A 1 HETATM 6 C C6 CLR . . . E 4 153.421 131.289 139.09 1 37.04 ? C6 CLR 604 A 1 HETATM 7 C C7 CLR . . . E 4 153.712 130.834 137.655 1 36.37 ? C7 CLR 604 A 1 HETATM 8 C C8 CLR . . . E 4 155.176 130.419 137.491 1 31.33 ? C8 CLR 604 A 1 HETATM 9 C C9 CLR . . . E 4 156.099 131.466 138.172 1 34.05 ? C9 CLR 604 A 1 HETATM 10 C C10 CLR . . . E 4 155.881 131.544 139.705 1 35.21 ? C10 CLR 604 A 1 HETATM 11 C C11 CLR . . . E 4 157.569 131.288 137.762 1 37.18 ? C11 CLR 604 A 1 HETATM 12 C C12 CLR . . . E 4 157.775 131.191 136.239 1 33.74 ? C12 CLR 604 A 1 HETATM 13 C C13 CLR . . . E 4 156.955 130.015 135.684 1 35.5 ? C13 CLR 604 A 1 HETATM 14 C C14 CLR . . . E 4 155.468 130.392 136.029 1 30.51 ? C14 CLR 604 A 1 HETATM 15 C C15 CLR . . . E 4 154.631 129.402 135.173 1 35.96 ? C15 CLR 604 A 1 HETATM 16 C C16 CLR . . . E 4 155.453 129.314 133.834 1 33.77 ? C16 CLR 604 A 1 HETATM 17 C C17 CLR . . . E 4 156.853 129.993 134.108 1 33.66 ? C17 CLR 604 A 1 HETATM 18 C C18 CLR . . . E 4 157.356 128.672 136.232 1 36.78 ? C18 CLR 604 A 1 HETATM 19 C C19 CLR . . . E 4 156.462 130.288 140.383 1 33.97 ? C19 CLR 604 A 1 HETATM 20 C C20 CLR . . . E 4 157.934 129.191 133.385 1 39.07 ? C20 CLR 604 A 1 HETATM 21 C C21 CLR . . . E 4 159.372 129.638 133.675 1 35.2 ? C21 CLR 604 A 1 HETATM 22 C C22 CLR . . . E 4 157.657 129.47 131.859 1 35.6 ? C22 CLR 604 A 1 HETATM 23 C C23 CLR . . . E 4 157.502 128.176 131.05 1 39.12 ? C23 CLR 604 A 1 HETATM 24 C C24 CLR . . . E 4 156.092 128.304 130.385 1 37.87 ? C24 CLR 604 A 1 HETATM 25 C C25 CLR . . . E 4 155.857 127.061 129.507 1 36.12 ? C25 CLR 604 A 1 HETATM 26 C C26 CLR . . . E 4 156.575 127.308 128.171 1 35.09 ? C26 CLR 604 A 1 HETATM 27 C C27 CLR . . . E 4 154.383 126.685 129.363 1 35.27 ? C27 CLR 604 A 1 HETATM 28 O O1 CLR . . . E 4 154.151 133.689 143.084 1 40.1 ? O1 CLR 604 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #