data_9PCX
#
_model_server_result.job_id            yr-9COt50awgdgJJDNLf1A 
_model_server_result.datetime_utc      '2025-09-16 01:32:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9pcx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":801}' 
#
_entry.id    9PCX 
#
_exptl.entry_id    9PCX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9PCX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9PCX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 P N N 
? 5 Q N N 
? 5 S N N 
? 5 V N N 
? 5 X N N 
? 5 Y N N 
? 5 Z N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     9PCX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 4 ADP A 1 801 1000 ADP ADP . 
P 5 ATP A 1 802 1100 ATP ATP . 
Q 5 ATP B 1 801 1100 ATP ATP . 
R 4 ADP B 1 802 1000 ADP ADP . 
S 5 ATP C 1 801 1100 ATP ATP . 
T 4 ADP C 1 802 1000 ADP ADP . 
U 6 PO4 C 1 803 1001 PO4 PO4 . 
V 5 ATP D 1 801 1100 ATP ATP . 
W 4 ADP D 1 802 1000 ADP ADP . 
X 5 ATP E 1 801 1000 ATP ATP . 
Y 5 ATP E 1 802 1100 ATP ATP . 
Z 5 ATP F 1 801 1100 ATP ATP . 
AA 4 ADP F 1 802 1000 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . V 5 121.637 141.569 159.842 1 60.58 ? PG ATP 801 D 1 
HETATM 2 O O1G ATP . . . V 5 122.562 142.723 160.013 1 60.58 ? O1G ATP 801 D 1 
HETATM 3 O O2G ATP . . . V 5 122.322 140.279 159.411 1 60.58 ? O2G ATP 801 D 1 
HETATM 4 O O3G ATP . . . V 5 120.777 141.282 161.069 1 60.58 ? O3G ATP 801 D 1 
HETATM 5 P PB ATP . . . V 5 119.048 142.091 158.506 1 60.58 ? PB ATP 801 D 1 
HETATM 6 O O1B ATP . . . V 5 118.265 140.966 159.049 1 60.58 ? O1B ATP 801 D 1 
HETATM 7 O O2B ATP . . . V 5 118.722 143.468 159.077 1 60.58 ? O2B ATP 801 D 1 
HETATM 8 O O3B ATP . . . V 5 120.593 141.865 158.692 1 60.58 ? O3B ATP 801 D 1 
HETATM 9 P PA ATP . . . V 5 119.423 143.191 155.806 1 60.58 ? PA ATP 801 D 1 
HETATM 10 O O1A ATP . . . V 5 120.84 142.946 155.472 1 60.58 ? O1A ATP 801 D 1 
HETATM 11 O O2A ATP . . . V 5 119.104 144.601 156.293 1 60.58 ? O2A ATP 801 D 1 
HETATM 12 O O3A ATP . . . V 5 118.926 142.203 156.925 1 60.58 ? O3A ATP 801 D 1 
HETATM 13 O O5' ATP . . . V 5 118.477 142.858 154.589 1 60.58 ? O5' ATP 801 D 1 
HETATM 14 C C5' ATP . . . V 5 117.53 143.825 154.09 1 60.58 ? C5' ATP 801 D 1 
HETATM 15 C C4' ATP . . . V 5 117.271 143.521 152.64 1 60.58 ? C4' ATP 801 D 1 
HETATM 16 O O4' ATP . . . V 5 115.841 143.363 152.498 1 60.58 ? O4' ATP 801 D 1 
HETATM 17 C C3' ATP . . . V 5 117.621 144.72 151.761 1 60.58 ? C3' ATP 801 D 1 
HETATM 18 O O3' ATP . . . V 5 117.807 144.2 150.452 1 60.58 ? O3' ATP 801 D 1 
HETATM 19 C C2' ATP . . . V 5 116.302 145.483 151.705 1 60.58 ? C2' ATP 801 D 1 
HETATM 20 O O2' ATP . . . V 5 116.257 146.088 150.421 1 60.58 ? O2' ATP 801 D 1 
HETATM 21 C C1' ATP . . . V 5 115.337 144.314 151.587 1 60.58 ? C1' ATP 801 D 1 
HETATM 22 N N9 ATP . . . V 5 114.004 144.672 152.047 1 60.58 ? N9 ATP 801 D 1 
HETATM 23 C C8 ATP . . . V 5 112.888 144.854 151.275 1 60.58 ? C8 ATP 801 D 1 
HETATM 24 N N7 ATP . . . V 5 111.814 145.176 151.953 1 60.58 ? N7 ATP 801 D 1 
HETATM 25 C C5 ATP . . . V 5 112.254 145.207 153.266 1 60.58 ? C5 ATP 801 D 1 
HETATM 26 C C6 ATP . . . V 5 111.599 145.485 154.48 1 60.58 ? C6 ATP 801 D 1 
HETATM 27 N N6 ATP . . . V 5 110.303 145.797 154.57 1 60.58 ? N6 ATP 801 D 1 
HETATM 28 N N1 ATP . . . V 5 112.328 145.431 155.614 1 60.58 ? N1 ATP 801 D 1 
HETATM 29 C C2 ATP . . . V 5 113.623 145.12 155.53 1 60.58 ? C2 ATP 801 D 1 
HETATM 30 N N3 ATP . . . V 5 114.348 144.839 154.445 1 60.58 ? N3 ATP 801 D 1 
HETATM 31 C C4 ATP . . . V 5 113.602 144.9 153.34 1 60.58 ? C4 ATP 801 D 1 
HETATM 32 H "H5'1" ATP . . . V 5 117.894 144.719 154.181 1 60.58 ? "H5'1" ATP 801 D 1 
HETATM 33 H "H5'2" ATP . . . V 5 116.702 143.757 154.592 1 60.58 ? "H5'2" ATP 801 D 1 
HETATM 34 H H4' ATP . . . V 5 117.754 142.728 152.362 1 60.58 ? H4' ATP 801 D 1 
HETATM 35 H H3' ATP . . . V 5 118.371 145.246 152.081 1 60.58 ? H3' ATP 801 D 1 
HETATM 36 H HO3' ATP . . . V 5 118.456 144.627 150.108 1 60.58 ? HO3' ATP 801 D 1 
HETATM 37 H H2' ATP . . . V 5 116.14 146.087 152.446 1 60.58 ? H2' ATP 801 D 1 
HETATM 38 H HO2' ATP . . . V 5 116.568 146.875 150.509 1 60.58 ? HO2' ATP 801 D 1 
HETATM 39 H H1' ATP . . . V 5 115.31 143.969 150.681 1 60.58 ? H1' ATP 801 D 1 
HETATM 40 H H8 ATP . . . V 5 112.892 144.758 150.35 1 60.58 ? H8 ATP 801 D 1 
HETATM 41 H HN61 ATP . . . V 5 109.814 145.817 153.863 1 60.58 ? HN61 ATP 801 D 1 
HETATM 42 H HN62 ATP . . . V 5 109.955 145.978 155.336 1 60.58 ? HN62 ATP 801 D 1 
HETATM 43 H H2 ATP . . . V 5 114.083 145.095 156.338 1 60.58 ? H2 ATP 801 D 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    88 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#