data_9PWN # _model_server_result.job_id 42MO2HEnTFkGeN7DRIICew _model_server_result.datetime_utc '2025-10-01 16:12:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9pwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":304}' # _entry.id 9PWN # _exptl.entry_id 9PWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9PWN _cell.length_a 51.65 _cell.length_b 71.76 _cell.length_c 105.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9PWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 Q N N ? 7 R N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 A SG CYS 149 H CYS 149 1_555 A SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag ? _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9PWN _atom_sites.fract_transf_matrix[1][1] 0.019361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEG H 1 301 1 PEG PEG ? E 5 GOL H 1 302 1 GOL GOL ? F 5 GOL H 1 303 2 GOL GOL ? G 5 GOL H 1 304 3 GOL GOL ? H 6 SO4 H 1 305 1 SO4 SO4 ? I 6 SO4 H 1 306 2 SO4 SO4 ? J 6 SO4 H 1 307 4 SO4 SO4 ? K 6 SO4 H 1 308 5 SO4 SO4 ? L 6 SO4 H 1 309 6 SO4 SO4 ? M 7 EDO H 1 310 1 EDO EDO ? N 6 SO4 L 1 301 3 SO4 SO4 ? O 6 SO4 L 1 302 7 SO4 SO4 ? P 6 SO4 L 1 303 8 SO4 SO4 ? Q 7 EDO L 1 304 2 EDO EDO ? R 7 EDO L 1 305 3 EDO EDO ? S 7 EDO L 1 306 4 EDO EDO ? T 8 HOH H 1 401 61 HOH HOH ? T 8 HOH H 2 402 107 HOH HOH ? T 8 HOH H 3 403 129 HOH HOH ? T 8 HOH H 4 404 67 HOH HOH ? T 8 HOH H 5 405 155 HOH HOH ? T 8 HOH H 6 406 112 HOH HOH ? T 8 HOH H 7 407 59 HOH HOH ? T 8 HOH H 8 408 128 HOH HOH ? T 8 HOH H 9 409 97 HOH HOH ? T 8 HOH H 10 410 91 HOH HOH ? T 8 HOH H 11 411 70 HOH HOH ? T 8 HOH H 12 412 53 HOH HOH ? T 8 HOH H 13 413 69 HOH HOH ? T 8 HOH H 14 414 176 HOH HOH ? T 8 HOH H 15 415 101 HOH HOH ? T 8 HOH H 16 416 118 HOH HOH ? T 8 HOH H 17 417 44 HOH HOH ? T 8 HOH H 18 418 79 HOH HOH ? T 8 HOH H 19 419 51 HOH HOH ? T 8 HOH H 20 420 116 HOH HOH ? T 8 HOH H 21 421 178 HOH HOH ? T 8 HOH H 22 422 172 HOH HOH ? T 8 HOH H 23 423 103 HOH HOH ? T 8 HOH H 24 424 2 HOH HOH ? T 8 HOH H 25 425 147 HOH HOH ? T 8 HOH H 26 426 63 HOH HOH ? T 8 HOH H 27 427 24 HOH HOH ? T 8 HOH H 28 428 131 HOH HOH ? T 8 HOH H 29 429 25 HOH HOH ? T 8 HOH H 30 430 127 HOH HOH ? T 8 HOH H 31 431 122 HOH HOH ? T 8 HOH H 32 432 65 HOH HOH ? T 8 HOH H 33 433 132 HOH HOH ? T 8 HOH H 34 434 33 HOH HOH ? T 8 HOH H 35 435 20 HOH HOH ? T 8 HOH H 36 436 166 HOH HOH ? T 8 HOH H 37 437 16 HOH HOH ? T 8 HOH H 38 438 84 HOH HOH ? T 8 HOH H 39 439 48 HOH HOH ? T 8 HOH H 40 440 17 HOH HOH ? T 8 HOH H 41 441 35 HOH HOH ? T 8 HOH H 42 442 15 HOH HOH ? T 8 HOH H 43 443 26 HOH HOH ? T 8 HOH H 44 444 21 HOH HOH ? T 8 HOH H 45 445 29 HOH HOH ? T 8 HOH H 46 446 77 HOH HOH ? T 8 HOH H 47 447 71 HOH HOH ? T 8 HOH H 48 448 46 HOH HOH ? T 8 HOH H 49 449 5 HOH HOH ? T 8 HOH H 50 450 124 HOH HOH ? T 8 HOH H 51 451 41 HOH HOH ? T 8 HOH H 52 452 108 HOH HOH ? T 8 HOH H 53 453 32 HOH HOH ? T 8 HOH H 54 454 45 HOH HOH ? T 8 HOH H 55 455 11 HOH HOH ? T 8 HOH H 56 456 88 HOH HOH ? T 8 HOH H 57 457 179 HOH HOH ? T 8 HOH H 58 458 162 HOH HOH ? T 8 HOH H 59 459 106 HOH HOH ? T 8 HOH H 60 460 8 HOH HOH ? T 8 HOH H 61 461 119 HOH HOH ? T 8 HOH H 62 462 156 HOH HOH ? T 8 HOH H 63 463 14 HOH HOH ? T 8 HOH H 64 464 12 HOH HOH ? T 8 HOH H 65 465 164 HOH HOH ? T 8 HOH H 66 466 73 HOH HOH ? T 8 HOH H 67 467 144 HOH HOH ? T 8 HOH H 68 468 37 HOH HOH ? T 8 HOH H 69 469 171 HOH HOH ? T 8 HOH H 70 470 120 HOH HOH ? T 8 HOH H 71 471 40 HOH HOH ? T 8 HOH H 72 472 148 HOH HOH ? T 8 HOH H 73 473 92 HOH HOH ? T 8 HOH H 74 474 121 HOH HOH ? T 8 HOH H 75 475 34 HOH HOH ? T 8 HOH H 76 476 13 HOH HOH ? T 8 HOH H 77 477 163 HOH HOH ? T 8 HOH H 78 478 180 HOH HOH ? T 8 HOH H 79 479 167 HOH HOH ? T 8 HOH H 80 480 134 HOH HOH ? T 8 HOH H 81 481 133 HOH HOH ? T 8 HOH H 82 482 137 HOH HOH ? T 8 HOH H 83 483 145 HOH HOH ? T 8 HOH H 84 484 81 HOH HOH ? T 8 HOH H 85 485 160 HOH HOH ? T 8 HOH H 86 486 82 HOH HOH ? T 8 HOH H 87 487 158 HOH HOH ? T 8 HOH H 88 488 28 HOH HOH ? T 8 HOH H 89 489 175 HOH HOH ? U 8 HOH L 1 401 143 HOH HOH ? U 8 HOH L 2 402 117 HOH HOH ? U 8 HOH L 3 403 99 HOH HOH ? U 8 HOH L 4 404 114 HOH HOH ? U 8 HOH L 5 405 159 HOH HOH ? U 8 HOH L 6 406 126 HOH HOH ? U 8 HOH L 7 407 111 HOH HOH ? U 8 HOH L 8 408 168 HOH HOH ? U 8 HOH L 9 409 54 HOH HOH ? U 8 HOH L 10 410 52 HOH HOH ? U 8 HOH L 11 411 3 HOH HOH ? U 8 HOH L 12 412 36 HOH HOH ? U 8 HOH L 13 413 56 HOH HOH ? U 8 HOH L 14 414 146 HOH HOH ? U 8 HOH L 15 415 57 HOH HOH ? U 8 HOH L 16 416 47 HOH HOH ? U 8 HOH L 17 417 76 HOH HOH ? U 8 HOH L 18 418 78 HOH HOH ? U 8 HOH L 19 419 100 HOH HOH ? U 8 HOH L 20 420 93 HOH HOH ? U 8 HOH L 21 421 72 HOH HOH ? U 8 HOH L 22 422 115 HOH HOH ? U 8 HOH L 23 423 19 HOH HOH ? U 8 HOH L 24 424 49 HOH HOH ? U 8 HOH L 25 425 38 HOH HOH ? U 8 HOH L 26 426 154 HOH HOH ? U 8 HOH L 27 427 43 HOH HOH ? U 8 HOH L 28 428 130 HOH HOH ? U 8 HOH L 29 429 86 HOH HOH ? U 8 HOH L 30 430 157 HOH HOH ? U 8 HOH L 31 431 90 HOH HOH ? U 8 HOH L 32 432 42 HOH HOH ? U 8 HOH L 33 433 87 HOH HOH ? U 8 HOH L 34 434 6 HOH HOH ? U 8 HOH L 35 435 123 HOH HOH ? U 8 HOH L 36 436 83 HOH HOH ? U 8 HOH L 37 437 165 HOH HOH ? U 8 HOH L 38 438 125 HOH HOH ? U 8 HOH L 39 439 64 HOH HOH ? U 8 HOH L 40 440 138 HOH HOH ? U 8 HOH L 41 441 94 HOH HOH ? U 8 HOH L 42 442 27 HOH HOH ? U 8 HOH L 43 443 80 HOH HOH ? U 8 HOH L 44 444 177 HOH HOH ? U 8 HOH L 45 445 39 HOH HOH ? U 8 HOH L 46 446 23 HOH HOH ? U 8 HOH L 47 447 50 HOH HOH ? U 8 HOH L 48 448 95 HOH HOH ? U 8 HOH L 49 449 85 HOH HOH ? U 8 HOH L 50 450 110 HOH HOH ? U 8 HOH L 51 451 98 HOH HOH ? U 8 HOH L 52 452 136 HOH HOH ? U 8 HOH L 53 453 74 HOH HOH ? U 8 HOH L 54 454 181 HOH HOH ? U 8 HOH L 55 455 151 HOH HOH ? U 8 HOH L 56 456 7 HOH HOH ? U 8 HOH L 57 457 31 HOH HOH ? U 8 HOH L 58 458 153 HOH HOH ? U 8 HOH L 59 459 9 HOH HOH ? U 8 HOH L 60 460 150 HOH HOH ? U 8 HOH L 61 461 75 HOH HOH ? U 8 HOH L 62 462 55 HOH HOH ? U 8 HOH L 63 463 30 HOH HOH ? U 8 HOH L 64 464 152 HOH HOH ? U 8 HOH L 65 465 149 HOH HOH ? U 8 HOH L 66 466 135 HOH HOH ? U 8 HOH L 67 467 140 HOH HOH ? U 8 HOH L 68 468 173 HOH HOH ? U 8 HOH L 69 469 142 HOH HOH ? U 8 HOH L 70 470 141 HOH HOH ? U 8 HOH L 71 471 169 HOH HOH ? U 8 HOH L 72 472 161 HOH HOH ? U 8 HOH L 73 473 170 HOH HOH ? V 8 HOH A 1 201 22 HOH HOH ? V 8 HOH A 2 202 89 HOH HOH ? V 8 HOH A 3 203 1 HOH HOH ? V 8 HOH A 4 204 102 HOH HOH ? V 8 HOH A 5 205 182 HOH HOH ? V 8 HOH A 6 206 113 HOH HOH ? V 8 HOH A 7 207 60 HOH HOH ? V 8 HOH A 8 208 4 HOH HOH ? V 8 HOH A 9 209 174 HOH HOH ? V 8 HOH A 10 210 104 HOH HOH ? V 8 HOH A 11 211 58 HOH HOH ? V 8 HOH A 12 212 105 HOH HOH ? V 8 HOH A 13 213 68 HOH HOH ? V 8 HOH A 14 214 18 HOH HOH ? V 8 HOH A 15 215 66 HOH HOH ? V 8 HOH A 16 216 10 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Q 7 -37.256 -37.456 4.887 1 60.19 ? C1 EDO 304 L 1 HETATM 2 O O1 EDO . . . Q 7 -37.469 -37.358 3.496 1 63.23 ? O1 EDO 304 L 1 HETATM 3 C C2 EDO . . . Q 7 -38.401 -38.069 5.613 1 65.44 ? C2 EDO 304 L 1 HETATM 4 O O2 EDO . . . Q 7 -38.81 -37.315 6.736 1 65.25 ? O2 EDO 304 L 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #