data_9QDH # _model_server_result.job_id p6OXXCK8fdCyqRFLBozZkA _model_server_result.datetime_utc '2025-08-20 10:42:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9qdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 9QDH # _exptl.entry_id 9QDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9QDH _cell.length_a 70.739 _cell.length_b 85.198 _cell.length_c 90.666 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9QDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 233 A GLU 551 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A SG CYS 288 A CYS 606 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A SG CYS 298 A CYS 616 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A SG CYS 301 A CYS 619 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 9QDH _atom_sites.fract_transf_matrix[1][1] 0.014136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 901 1 PEG PEG . C 3 ZN A 1 902 1 ZN ZN . D 4 HOH A 1 1001 239 HOH HOH . D 4 HOH A 2 1002 78 HOH HOH . D 4 HOH A 3 1003 164 HOH HOH . D 4 HOH A 4 1004 198 HOH HOH . D 4 HOH A 5 1005 178 HOH HOH . D 4 HOH A 6 1006 132 HOH HOH . D 4 HOH A 7 1007 185 HOH HOH . D 4 HOH A 8 1008 146 HOH HOH . D 4 HOH A 9 1009 137 HOH HOH . D 4 HOH A 10 1010 98 HOH HOH . D 4 HOH A 11 1011 143 HOH HOH . D 4 HOH A 12 1012 106 HOH HOH . D 4 HOH A 13 1013 140 HOH HOH . D 4 HOH A 14 1014 88 HOH HOH . D 4 HOH A 15 1015 209 HOH HOH . D 4 HOH A 16 1016 119 HOH HOH . D 4 HOH A 17 1017 225 HOH HOH . D 4 HOH A 18 1018 58 HOH HOH . D 4 HOH A 19 1019 63 HOH HOH . D 4 HOH A 20 1020 13 HOH HOH . D 4 HOH A 21 1021 214 HOH HOH . D 4 HOH A 22 1022 184 HOH HOH . D 4 HOH A 23 1023 21 HOH HOH . D 4 HOH A 24 1024 94 HOH HOH . D 4 HOH A 25 1025 75 HOH HOH . D 4 HOH A 26 1026 11 HOH HOH . D 4 HOH A 27 1027 113 HOH HOH . D 4 HOH A 28 1028 81 HOH HOH . D 4 HOH A 29 1029 90 HOH HOH . D 4 HOH A 30 1030 161 HOH HOH . D 4 HOH A 31 1031 53 HOH HOH . D 4 HOH A 32 1032 80 HOH HOH . D 4 HOH A 33 1033 226 HOH HOH . D 4 HOH A 34 1034 171 HOH HOH . D 4 HOH A 35 1035 57 HOH HOH . D 4 HOH A 36 1036 87 HOH HOH . D 4 HOH A 37 1037 100 HOH HOH . D 4 HOH A 38 1038 258 HOH HOH . D 4 HOH A 39 1039 111 HOH HOH . D 4 HOH A 40 1040 172 HOH HOH . D 4 HOH A 41 1041 202 HOH HOH . D 4 HOH A 42 1042 68 HOH HOH . D 4 HOH A 43 1043 217 HOH HOH . D 4 HOH A 44 1044 49 HOH HOH . D 4 HOH A 45 1045 151 HOH HOH . D 4 HOH A 46 1046 103 HOH HOH . D 4 HOH A 47 1047 34 HOH HOH . D 4 HOH A 48 1048 93 HOH HOH . D 4 HOH A 49 1049 47 HOH HOH . D 4 HOH A 50 1050 141 HOH HOH . D 4 HOH A 51 1051 83 HOH HOH . D 4 HOH A 52 1052 131 HOH HOH . D 4 HOH A 53 1053 169 HOH HOH . D 4 HOH A 54 1054 205 HOH HOH . D 4 HOH A 55 1055 44 HOH HOH . D 4 HOH A 56 1056 154 HOH HOH . D 4 HOH A 57 1057 35 HOH HOH . D 4 HOH A 58 1058 150 HOH HOH . D 4 HOH A 59 1059 233 HOH HOH . D 4 HOH A 60 1060 42 HOH HOH . D 4 HOH A 61 1061 101 HOH HOH . D 4 HOH A 62 1062 72 HOH HOH . D 4 HOH A 63 1063 9 HOH HOH . D 4 HOH A 64 1064 41 HOH HOH . D 4 HOH A 65 1065 194 HOH HOH . D 4 HOH A 66 1066 148 HOH HOH . D 4 HOH A 67 1067 5 HOH HOH . D 4 HOH A 68 1068 99 HOH HOH . D 4 HOH A 69 1069 46 HOH HOH . D 4 HOH A 70 1070 74 HOH HOH . D 4 HOH A 71 1071 246 HOH HOH . D 4 HOH A 72 1072 134 HOH HOH . D 4 HOH A 73 1073 64 HOH HOH . D 4 HOH A 74 1074 28 HOH HOH . D 4 HOH A 75 1075 25 HOH HOH . D 4 HOH A 76 1076 67 HOH HOH . D 4 HOH A 77 1077 95 HOH HOH . D 4 HOH A 78 1078 147 HOH HOH . D 4 HOH A 79 1079 62 HOH HOH . D 4 HOH A 80 1080 158 HOH HOH . D 4 HOH A 81 1081 96 HOH HOH . D 4 HOH A 82 1082 55 HOH HOH . D 4 HOH A 83 1083 40 HOH HOH . D 4 HOH A 84 1084 229 HOH HOH . D 4 HOH A 85 1085 86 HOH HOH . D 4 HOH A 86 1086 38 HOH HOH . D 4 HOH A 87 1087 105 HOH HOH . D 4 HOH A 88 1088 18 HOH HOH . D 4 HOH A 89 1089 124 HOH HOH . D 4 HOH A 90 1090 6 HOH HOH . D 4 HOH A 91 1091 73 HOH HOH . D 4 HOH A 92 1092 259 HOH HOH . D 4 HOH A 93 1093 24 HOH HOH . D 4 HOH A 94 1094 27 HOH HOH . D 4 HOH A 95 1095 10 HOH HOH . D 4 HOH A 96 1096 168 HOH HOH . D 4 HOH A 97 1097 36 HOH HOH . D 4 HOH A 98 1098 114 HOH HOH . D 4 HOH A 99 1099 16 HOH HOH . D 4 HOH A 100 1100 186 HOH HOH . D 4 HOH A 101 1101 19 HOH HOH . D 4 HOH A 102 1102 129 HOH HOH . D 4 HOH A 103 1103 130 HOH HOH . D 4 HOH A 104 1104 20 HOH HOH . D 4 HOH A 105 1105 7 HOH HOH . D 4 HOH A 106 1106 174 HOH HOH . D 4 HOH A 107 1107 118 HOH HOH . D 4 HOH A 108 1108 213 HOH HOH . D 4 HOH A 109 1109 117 HOH HOH . D 4 HOH A 110 1110 110 HOH HOH . D 4 HOH A 111 1111 145 HOH HOH . D 4 HOH A 112 1112 231 HOH HOH . D 4 HOH A 113 1113 82 HOH HOH . D 4 HOH A 114 1114 54 HOH HOH . D 4 HOH A 115 1115 139 HOH HOH . D 4 HOH A 116 1116 162 HOH HOH . D 4 HOH A 117 1117 175 HOH HOH . D 4 HOH A 118 1118 127 HOH HOH . D 4 HOH A 119 1119 142 HOH HOH . D 4 HOH A 120 1120 109 HOH HOH . D 4 HOH A 121 1121 136 HOH HOH . D 4 HOH A 122 1122 76 HOH HOH . D 4 HOH A 123 1123 112 HOH HOH . D 4 HOH A 124 1124 191 HOH HOH . D 4 HOH A 125 1125 232 HOH HOH . D 4 HOH A 126 1126 123 HOH HOH . D 4 HOH A 127 1127 177 HOH HOH . D 4 HOH A 128 1128 257 HOH HOH . D 4 HOH A 129 1129 195 HOH HOH . D 4 HOH A 130 1130 8 HOH HOH . D 4 HOH A 131 1131 4 HOH HOH . D 4 HOH A 132 1132 221 HOH HOH . D 4 HOH A 133 1133 70 HOH HOH . D 4 HOH A 134 1134 254 HOH HOH . D 4 HOH A 135 1135 149 HOH HOH . D 4 HOH A 136 1136 91 HOH HOH . D 4 HOH A 137 1137 156 HOH HOH . D 4 HOH A 138 1138 37 HOH HOH . D 4 HOH A 139 1139 14 HOH HOH . D 4 HOH A 140 1140 102 HOH HOH . D 4 HOH A 141 1141 89 HOH HOH . D 4 HOH A 142 1142 108 HOH HOH . D 4 HOH A 143 1143 29 HOH HOH . D 4 HOH A 144 1144 187 HOH HOH . D 4 HOH A 145 1145 160 HOH HOH . D 4 HOH A 146 1146 170 HOH HOH . D 4 HOH A 147 1147 243 HOH HOH . D 4 HOH A 148 1148 85 HOH HOH . D 4 HOH A 149 1149 207 HOH HOH . D 4 HOH A 150 1150 155 HOH HOH . D 4 HOH A 151 1151 163 HOH HOH . D 4 HOH A 152 1152 215 HOH HOH . D 4 HOH A 153 1153 144 HOH HOH . D 4 HOH A 154 1154 66 HOH HOH . D 4 HOH A 155 1155 218 HOH HOH . D 4 HOH A 156 1156 122 HOH HOH . D 4 HOH A 157 1157 69 HOH HOH . D 4 HOH A 158 1158 241 HOH HOH . D 4 HOH A 159 1159 31 HOH HOH . D 4 HOH A 160 1160 133 HOH HOH . D 4 HOH A 161 1161 238 HOH HOH . D 4 HOH A 162 1162 77 HOH HOH . D 4 HOH A 163 1163 190 HOH HOH . D 4 HOH A 164 1164 1 HOH HOH . D 4 HOH A 165 1165 256 HOH HOH . D 4 HOH A 166 1166 59 HOH HOH . D 4 HOH A 167 1167 45 HOH HOH . D 4 HOH A 168 1168 262 HOH HOH . D 4 HOH A 169 1169 33 HOH HOH . D 4 HOH A 170 1170 3 HOH HOH . D 4 HOH A 171 1171 167 HOH HOH . D 4 HOH A 172 1172 153 HOH HOH . D 4 HOH A 173 1173 50 HOH HOH . D 4 HOH A 174 1174 201 HOH HOH . D 4 HOH A 175 1175 26 HOH HOH . D 4 HOH A 176 1176 43 HOH HOH . D 4 HOH A 177 1177 181 HOH HOH . D 4 HOH A 178 1178 157 HOH HOH . D 4 HOH A 179 1179 30 HOH HOH . D 4 HOH A 180 1180 176 HOH HOH . D 4 HOH A 181 1181 166 HOH HOH . D 4 HOH A 182 1182 48 HOH HOH . D 4 HOH A 183 1183 79 HOH HOH . D 4 HOH A 184 1184 56 HOH HOH . D 4 HOH A 185 1185 188 HOH HOH . D 4 HOH A 186 1186 210 HOH HOH . D 4 HOH A 187 1187 244 HOH HOH . D 4 HOH A 188 1188 227 HOH HOH . D 4 HOH A 189 1189 115 HOH HOH . D 4 HOH A 190 1190 104 HOH HOH . D 4 HOH A 191 1191 230 HOH HOH . D 4 HOH A 192 1192 32 HOH HOH . D 4 HOH A 193 1193 15 HOH HOH . D 4 HOH A 194 1194 135 HOH HOH . D 4 HOH A 195 1195 84 HOH HOH . D 4 HOH A 196 1196 182 HOH HOH . D 4 HOH A 197 1197 51 HOH HOH . D 4 HOH A 198 1198 121 HOH HOH . D 4 HOH A 199 1199 250 HOH HOH . D 4 HOH A 200 1200 234 HOH HOH . D 4 HOH A 201 1201 219 HOH HOH . D 4 HOH A 202 1202 60 HOH HOH . D 4 HOH A 203 1203 71 HOH HOH . D 4 HOH A 204 1204 12 HOH HOH . D 4 HOH A 205 1205 235 HOH HOH . D 4 HOH A 206 1206 107 HOH HOH . D 4 HOH A 207 1207 22 HOH HOH . D 4 HOH A 208 1208 252 HOH HOH . D 4 HOH A 209 1209 128 HOH HOH . D 4 HOH A 210 1210 97 HOH HOH . D 4 HOH A 211 1211 203 HOH HOH . D 4 HOH A 212 1212 253 HOH HOH . D 4 HOH A 213 1213 159 HOH HOH . D 4 HOH A 214 1214 179 HOH HOH . D 4 HOH A 215 1215 39 HOH HOH . D 4 HOH A 216 1216 204 HOH HOH . D 4 HOH A 217 1217 206 HOH HOH . D 4 HOH A 218 1218 240 HOH HOH . D 4 HOH A 219 1219 200 HOH HOH . D 4 HOH A 220 1220 199 HOH HOH . D 4 HOH A 221 1221 193 HOH HOH . D 4 HOH A 222 1222 2 HOH HOH . D 4 HOH A 223 1223 183 HOH HOH . D 4 HOH A 224 1224 173 HOH HOH . D 4 HOH A 225 1225 208 HOH HOH . D 4 HOH A 226 1226 260 HOH HOH . D 4 HOH A 227 1227 255 HOH HOH . D 4 HOH A 228 1228 17 HOH HOH . D 4 HOH A 229 1229 92 HOH HOH . D 4 HOH A 230 1230 197 HOH HOH . D 4 HOH A 231 1231 23 HOH HOH . D 4 HOH A 232 1232 65 HOH HOH . D 4 HOH A 233 1233 247 HOH HOH . D 4 HOH A 234 1234 248 HOH HOH . D 4 HOH A 235 1235 165 HOH HOH . D 4 HOH A 236 1236 196 HOH HOH . D 4 HOH A 237 1237 220 HOH HOH . D 4 HOH A 238 1238 224 HOH HOH . D 4 HOH A 239 1239 189 HOH HOH . D 4 HOH A 240 1240 152 HOH HOH . D 4 HOH A 241 1241 120 HOH HOH . D 4 HOH A 242 1242 223 HOH HOH . D 4 HOH A 243 1243 52 HOH HOH . D 4 HOH A 244 1244 212 HOH HOH . D 4 HOH A 245 1245 211 HOH HOH . D 4 HOH A 246 1246 242 HOH HOH . D 4 HOH A 247 1247 261 HOH HOH . D 4 HOH A 248 1248 61 HOH HOH . D 4 HOH A 249 1249 180 HOH HOH . D 4 HOH A 250 1250 125 HOH HOH . D 4 HOH A 251 1251 237 HOH HOH . D 4 HOH A 252 1252 222 HOH HOH . D 4 HOH A 253 1253 216 HOH HOH . D 4 HOH A 254 1254 245 HOH HOH . D 4 HOH A 255 1255 236 HOH HOH . D 4 HOH A 256 1256 116 HOH HOH . D 4 HOH A 257 1257 126 HOH HOH . D 4 HOH A 258 1258 228 HOH HOH . D 4 HOH A 259 1259 249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . B 2 -32.679 32.061 -24.849 1 53.39 ? C1 PEG 901 A 1 HETATM 2 O O1 PEG . . . B 2 -32.255 31.609 -26.127 1 51.57 ? O1 PEG 901 A 1 HETATM 3 C C2 PEG . . . B 2 -32.892 30.917 -23.909 1 47.61 ? C2 PEG 901 A 1 HETATM 4 O O2 PEG . . . B 2 -31.75 30.072 -23.931 1 51.65 ? O2 PEG 901 A 1 HETATM 5 C C3 PEG . . . B 2 -31.857 28.978 -23.034 1 40.62 ? C3 PEG 901 A 1 HETATM 6 C C4 PEG . . . B 2 -31.66 29.464 -21.631 1 40.84 ? C4 PEG 901 A 1 HETATM 7 O O4 PEG . . . B 2 -31.301 28.399 -20.764 1 42.3 ? O4 PEG 901 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #