data_9QEU # _model_server_result.job_id y6nsz-V0fEsZGldzn6fV_Q _model_server_result.datetime_utc '2025-09-04 15:56:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9qeu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9QEU # _exptl.entry_id 9QEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.561 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(1~{R},2~{R})-2-[[(1~{S})-1-(2-methoxyphenyl)-3-(methylamino)-3-oxidanylidene-propyl]carbamoyl]cyclopentyl]-4,5,6,7-tetrahydro-1~{H}-indazole-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9QEU _cell.length_a 47.051 _cell.length_b 74.569 _cell.length_c 78.114 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9QEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H33 N5 O4' _chem_comp.formula_weight 467.561 _chem_comp.id A1I6K _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(1~{R},2~{R})-2-[[(1~{S})-1-(2-methoxyphenyl)-3-(methylamino)-3-oxidanylidene-propyl]carbamoyl]cyclopentyl]-4,5,6,7-tetrahydro-1~{H}-indazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 O3 A1I6K sing 1 n n O3 C23 A1I6K sing 2 n n C22 C23 A1I6K doub 3 n y C22 C21 A1I6K sing 4 n y O1 C4 A1I6K doub 5 n n C23 C18 A1I6K sing 6 n y C21 C20 A1I6K doub 7 n y O2 C10 A1I6K doub 8 n n C7 C6 A1I6K sing 9 n n C7 C8 A1I6K sing 10 n n C18 C3 A1I6K sing 11 n n C18 C19 A1I6K doub 12 n y C4 C5 A1I6K sing 13 n n C4 N1 A1I6K sing 14 n n C6 C5 A1I6K sing 15 n n C20 C19 A1I6K sing 16 n y C3 N1 A1I6K sing 17 n n C3 C2 A1I6K sing 18 n n C9 C8 A1I6K sing 19 n n C9 C5 A1I6K sing 20 n n C9 N2 A1I6K sing 21 n n O C1 A1I6K doub 22 n n C16 C15 A1I6K sing 23 n n C16 C17 A1I6K sing 24 n n C10 N2 A1I6K sing 25 n n C10 C11 A1I6K sing 26 n n C15 C14 A1I6K sing 27 n n C2 C1 A1I6K sing 28 n n C1 N A1I6K sing 29 n n C17 C11 A1I6K sing 30 n y C17 C12 A1I6K doub 31 n y C11 N3 A1I6K doub 32 n y C14 C13 A1I6K sing 33 n n N C A1I6K sing 34 n n C12 C13 A1I6K sing 35 n n C12 N4 A1I6K sing 36 n y N3 N4 A1I6K sing 37 n y C2 H1 A1I6K sing 38 n n C2 H2 A1I6K sing 39 n n C3 H3 A1I6K sing 40 n n C7 H4 A1I6K sing 41 n n C7 H5 A1I6K sing 42 n n C8 H6 A1I6K sing 43 n n C8 H7 A1I6K sing 44 n n C9 H8 A1I6K sing 45 n n C13 H9 A1I6K sing 46 n n C13 H10 A1I6K sing 47 n n C14 H11 A1I6K sing 48 n n C14 H12 A1I6K sing 49 n n C15 H13 A1I6K sing 50 n n C15 H14 A1I6K sing 51 n n C16 H15 A1I6K sing 52 n n C16 H16 A1I6K sing 53 n n C19 H17 A1I6K sing 54 n n C20 H18 A1I6K sing 55 n n C21 H19 A1I6K sing 56 n n C22 H20 A1I6K sing 57 n n C24 H21 A1I6K sing 58 n n C24 H22 A1I6K sing 59 n n C24 H23 A1I6K sing 60 n n N4 H24 A1I6K sing 61 n n N2 H25 A1I6K sing 62 n n C6 H26 A1I6K sing 63 n n C6 H27 A1I6K sing 64 n n C5 H28 A1I6K sing 65 n n N1 H29 A1I6K sing 66 n n N H30 A1I6K sing 67 n n C H31 A1I6K sing 68 n n C H32 A1I6K sing 69 n n C H33 A1I6K sing 70 n n # _atom_sites.entry_id 9QEU _atom_sites.fract_transf_matrix[1][1] 0.021254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1I6K A 1 201 201 A1I6K INH . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 HOH A 1 301 34 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 45 HOH HOH . E 4 HOH A 4 304 98 HOH HOH . E 4 HOH A 5 305 51 HOH HOH . E 4 HOH A 6 306 68 HOH HOH . E 4 HOH A 7 307 103 HOH HOH . E 4 HOH A 8 308 60 HOH HOH . E 4 HOH A 9 309 101 HOH HOH . E 4 HOH A 10 310 21 HOH HOH . E 4 HOH A 11 311 11 HOH HOH . E 4 HOH A 12 312 56 HOH HOH . E 4 HOH A 13 313 10 HOH HOH . E 4 HOH A 14 314 63 HOH HOH . E 4 HOH A 15 315 73 HOH HOH . E 4 HOH A 16 316 32 HOH HOH . E 4 HOH A 17 317 36 HOH HOH . E 4 HOH A 18 318 87 HOH HOH . E 4 HOH A 19 319 52 HOH HOH . E 4 HOH A 20 320 18 HOH HOH . E 4 HOH A 21 321 47 HOH HOH . E 4 HOH A 22 322 37 HOH HOH . E 4 HOH A 23 323 104 HOH HOH . E 4 HOH A 24 324 96 HOH HOH . E 4 HOH A 25 325 39 HOH HOH . E 4 HOH A 26 326 6 HOH HOH . E 4 HOH A 27 327 26 HOH HOH . E 4 HOH A 28 328 97 HOH HOH . E 4 HOH A 29 329 4 HOH HOH . E 4 HOH A 30 330 53 HOH HOH . E 4 HOH A 31 331 93 HOH HOH . E 4 HOH A 32 332 28 HOH HOH . E 4 HOH A 33 333 7 HOH HOH . E 4 HOH A 34 334 72 HOH HOH . E 4 HOH A 35 335 69 HOH HOH . E 4 HOH A 36 336 3 HOH HOH . E 4 HOH A 37 337 91 HOH HOH . E 4 HOH A 38 338 9 HOH HOH . E 4 HOH A 39 339 89 HOH HOH . E 4 HOH A 40 340 19 HOH HOH . E 4 HOH A 41 341 41 HOH HOH . E 4 HOH A 42 342 15 HOH HOH . E 4 HOH A 43 343 24 HOH HOH . E 4 HOH A 44 344 90 HOH HOH . E 4 HOH A 45 345 102 HOH HOH . E 4 HOH A 46 346 82 HOH HOH . E 4 HOH A 47 347 95 HOH HOH . E 4 HOH A 48 348 49 HOH HOH . E 4 HOH A 49 349 8 HOH HOH . E 4 HOH A 50 350 55 HOH HOH . E 4 HOH A 51 351 80 HOH HOH . E 4 HOH A 52 352 44 HOH HOH . E 4 HOH A 53 353 1 HOH HOH . E 4 HOH A 54 354 75 HOH HOH . E 4 HOH A 55 355 14 HOH HOH . E 4 HOH A 56 356 57 HOH HOH . E 4 HOH A 57 357 27 HOH HOH . E 4 HOH A 58 358 5 HOH HOH . E 4 HOH A 59 359 84 HOH HOH . E 4 HOH A 60 360 42 HOH HOH . E 4 HOH A 61 361 25 HOH HOH . E 4 HOH A 62 362 67 HOH HOH . E 4 HOH A 63 363 65 HOH HOH . E 4 HOH A 64 364 83 HOH HOH . E 4 HOH A 65 365 13 HOH HOH . E 4 HOH A 66 366 16 HOH HOH . E 4 HOH A 67 367 99 HOH HOH . E 4 HOH A 68 368 35 HOH HOH . E 4 HOH A 69 369 61 HOH HOH . E 4 HOH A 70 370 92 HOH HOH . E 4 HOH A 71 371 50 HOH HOH . E 4 HOH A 72 372 40 HOH HOH . E 4 HOH A 73 373 109 HOH HOH . E 4 HOH A 74 374 29 HOH HOH . E 4 HOH A 75 375 88 HOH HOH . E 4 HOH A 76 376 111 HOH HOH . E 4 HOH A 77 377 94 HOH HOH . E 4 HOH A 78 378 30 HOH HOH . E 4 HOH A 79 379 22 HOH HOH . E 4 HOH A 80 380 33 HOH HOH . E 4 HOH A 81 381 105 HOH HOH . E 4 HOH A 82 382 59 HOH HOH . E 4 HOH A 83 383 74 HOH HOH . E 4 HOH A 84 384 66 HOH HOH . E 4 HOH A 85 385 43 HOH HOH . E 4 HOH A 86 386 71 HOH HOH . E 4 HOH A 87 387 100 HOH HOH . E 4 HOH A 88 388 38 HOH HOH . E 4 HOH A 89 389 31 HOH HOH . E 4 HOH A 90 390 17 HOH HOH . E 4 HOH A 91 391 81 HOH HOH . E 4 HOH A 92 392 113 HOH HOH . E 4 HOH A 93 393 112 HOH HOH . E 4 HOH A 94 394 12 HOH HOH . E 4 HOH A 95 395 106 HOH HOH . E 4 HOH A 96 396 78 HOH HOH . E 4 HOH A 97 397 20 HOH HOH . E 4 HOH A 98 398 23 HOH HOH . E 4 HOH A 99 399 110 HOH HOH . E 4 HOH A 100 400 58 HOH HOH . E 4 HOH A 101 401 76 HOH HOH . E 4 HOH A 102 402 48 HOH HOH . E 4 HOH A 103 403 85 HOH HOH . E 4 HOH A 104 404 46 HOH HOH . E 4 HOH A 105 405 70 HOH HOH . E 4 HOH A 106 406 79 HOH HOH . E 4 HOH A 107 407 86 HOH HOH . E 4 HOH A 108 408 77 HOH HOH . E 4 HOH A 109 409 54 HOH HOH . E 4 HOH A 110 410 62 HOH HOH . E 4 HOH A 111 411 64 HOH HOH . E 4 HOH A 112 412 108 HOH HOH . E 4 HOH A 113 413 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1I6K . . . B 2 5.247 28.083 11.966 1 23.88 ? C1 A1I6K 201 A 1 HETATM 2 C C2 A1I6K . . . B 2 3.932 28.831 11.821 1 23.43 ? C2 A1I6K 201 A 1 HETATM 3 C C3 A1I6K . . . B 2 4.053 29.951 10.77 1 22.9 ? C3 A1I6K 201 A 1 HETATM 4 C C7 A1I6K . . . B 2 7.817 34.725 10.294 1 26.92 ? C7 A1I6K 201 A 1 HETATM 5 C C8 A1I6K . . . B 2 8.814 33.817 10.994 1 26.51 ? C8 A1I6K 201 A 1 HETATM 6 C C9 A1I6K . . . B 2 8.17 32.428 10.896 1 25.85 ? C9 A1I6K 201 A 1 HETATM 7 C C10 A1I6K . . . B 2 9.03 30.223 11.458 1 25.25 ? C10 A1I6K 201 A 1 HETATM 8 C C11 A1I6K . . . B 2 9.566 29.314 12.486 1 24.5 ? C11 A1I6K 201 A 1 HETATM 9 C C12 A1I6K . . . B 2 10.572 27.698 13.635 1 23.6 ? C12 A1I6K 201 A 1 HETATM 10 C C13 A1I6K . . . B 2 11.282 26.415 13.941 1 23.24 ? C13 A1I6K 201 A 1 HETATM 11 C C14 A1I6K . . . B 2 11.901 25.814 12.675 1 22.58 ? C14 A1I6K 201 A 1 HETATM 12 C C15 A1I6K . . . B 2 10.939 25.825 11.495 1 22.75 ? C15 A1I6K 201 A 1 HETATM 13 C C16 A1I6K . . . B 2 10.494 27.236 11.116 1 23 ? C16 A1I6K 201 A 1 HETATM 14 C C19 A1I6K . . . B 2 2.342 31.819 10.893 1 21.45 ? C19 A1I6K 201 A 1 HETATM 15 C C20 A1I6K . . . B 2 1.123 32.384 10.559 1 21.3 ? C20 A1I6K 201 A 1 HETATM 16 C C21 A1I6K . . . B 2 0.242 31.702 9.753 1 20.28 ? C21 A1I6K 201 A 1 HETATM 17 C C22 A1I6K . . . B 2 0.584 30.463 9.242 1 20.47 ? C22 A1I6K 201 A 1 HETATM 18 C C24 A1I6K . . . B 2 1.274 27.85 8.435 1 20.94 ? C24 A1I6K 201 A 1 HETATM 19 O O2 A1I6K . . . B 2 8.957 29.85 10.29 1 25.73 ? O2 A1I6K 201 A 1 HETATM 20 C C17 A1I6K . . . B 2 10.216 28.072 12.336 1 23.57 ? C17 A1I6K 201 A 1 HETATM 21 N N4 A1I6K . . . B 2 10.224 28.617 14.534 1 23.83 ? N4 A1I6K 201 A 1 HETATM 22 N N3 A1I6K . . . B 2 9.623 29.611 13.803 1 24.01 ? N3 A1I6K 201 A 1 HETATM 23 N N2 A1I6K . . . B 2 8.717 31.468 11.849 1 25.33 ? N2 A1I6K 201 A 1 HETATM 24 C C6 A1I6K . . . B 2 6.425 34.111 10.542 1 26.42 ? C6 A1I6K 201 A 1 HETATM 25 C C5 A1I6K . . . B 2 6.662 32.698 11.127 1 25.58 ? C5 A1I6K 201 A 1 HETATM 26 C C4 A1I6K . . . B 2 5.825 31.625 10.457 1 24.16 ? C4 A1I6K 201 A 1 HETATM 27 O O1 A1I6K . . . B 2 5.882 31.431 9.243 1 23.72 ? O1 A1I6K 201 A 1 HETATM 28 N N1 A1I6K . . . B 2 5.009 30.94 11.264 1 23.23 ? N1 A1I6K 201 A 1 HETATM 29 O O A1I6K . . . B 2 6.002 27.909 11.01 1 24.29 ? O A1I6K 201 A 1 HETATM 30 N N A1I6K . . . B 2 5.532 27.648 13.187 1 24.62 ? N A1I6K 201 A 1 HETATM 31 C C A1I6K . . . B 2 6.804 27.024 13.508 1 25.14 ? C A1I6K 201 A 1 HETATM 32 C C18 A1I6K . . . B 2 2.71 30.566 10.408 1 21.66 ? C18 A1I6K 201 A 1 HETATM 33 C C23 A1I6K . . . B 2 1.814 29.898 9.569 1 20.96 ? C23 A1I6K 201 A 1 HETATM 34 O O3 A1I6K . . . B 2 2.224 28.665 9.139 1 21.14 ? O3 A1I6K 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #