data_9QI7 # _model_server_result.job_id flHjDM5d_AbdwvG9sn4s0g _model_server_result.datetime_utc '2025-08-05 05:33:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9qi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 9QI7 # _exptl.entry_id 9QI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9QI7 _cell.length_a 110.66 _cell.length_b 117.068 _cell.length_c 51.061 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9QI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 41 A SER 70 1_555 B CAN NXL . A NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 C O1 PEG . A PEG 302 1_555 H ZN ZN . A ZN 307 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 9QI7 _atom_sites.fract_transf_matrix[1][1] 0.009037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 301 1 NXL NXL . C 3 PEG A 1 302 1 PEG PEG . D 4 ACT A 1 303 2 ACT ACT . E 4 ACT A 1 304 3 ACT ACT . F 5 GOL A 1 305 4 GOL GOL . G 6 ZN A 1 306 1 ZN ZN . H 6 ZN A 1 307 2 ZN ZN . I 7 HOH A 1 401 16 HOH HOH . I 7 HOH A 2 402 29 HOH HOH . I 7 HOH A 3 403 12 HOH HOH . I 7 HOH A 4 404 15 HOH HOH . I 7 HOH A 5 405 28 HOH HOH . I 7 HOH A 6 406 33 HOH HOH . I 7 HOH A 7 407 9 HOH HOH . I 7 HOH A 8 408 14 HOH HOH . I 7 HOH A 9 409 2 HOH HOH . I 7 HOH A 10 410 22 HOH HOH . I 7 HOH A 11 411 10 HOH HOH . I 7 HOH A 12 412 18 HOH HOH . I 7 HOH A 13 413 5 HOH HOH . I 7 HOH A 14 414 4 HOH HOH . I 7 HOH A 15 415 1 HOH HOH . I 7 HOH A 16 416 27 HOH HOH . I 7 HOH A 17 417 17 HOH HOH . I 7 HOH A 18 418 7 HOH HOH . I 7 HOH A 19 419 11 HOH HOH . I 7 HOH A 20 420 8 HOH HOH . I 7 HOH A 21 421 34 HOH HOH . I 7 HOH A 22 422 32 HOH HOH . I 7 HOH A 23 423 30 HOH HOH . I 7 HOH A 24 424 31 HOH HOH . I 7 HOH A 25 425 13 HOH HOH . I 7 HOH A 26 426 37 HOH HOH . I 7 HOH A 27 427 21 HOH HOH . I 7 HOH A 28 428 19 HOH HOH . I 7 HOH A 29 429 35 HOH HOH . I 7 HOH A 30 430 36 HOH HOH . I 7 HOH A 31 431 26 HOH HOH . I 7 HOH A 32 432 23 HOH HOH . I 7 HOH A 33 433 20 HOH HOH . I 7 HOH A 34 434 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -4.487 -8.87 -19.142 1 65.97 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 5 -5.587 -8.751 -18.247 1 40.55 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 5 -4.881 -9.619 -20.392 1 54.89 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 5 -3.961 -9.314 -21.439 1 113.13 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 5 -4.941 -11.115 -20.184 1 61.8 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 5 -6.076 -11.687 -20.825 1 49.33 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #