data_9QK5 # _model_server_result.job_id Kp-pv3kONuMNgF-urb4U9Q _model_server_result.datetime_utc '2025-07-14 22:00:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9qk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9QK5 # _exptl.entry_id 9QK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.157 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CAFFEIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9QK5 _cell.length_a 90.066 _cell.length_b 90.066 _cell.length_c 51.402 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9QK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 17.134 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H8 O4' _chem_comp.formula_weight 180.157 _chem_comp.id DHC _chem_comp.mon_nstd_flag . _chem_comp.name 'CAFFEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3,4-DIHYDROXYCINNAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DHC doub 83 n n C1 C2 DHC sing 84 n n C1 O2 DHC sing 85 n n C2 C3 DHC doub 86 e n C2 HC2 DHC sing 87 n n C3 C1' DHC sing 88 n n C3 HC3 DHC sing 89 n n C1' C2' DHC doub 90 n y C1' C6' DHC sing 91 n y C2' C3' DHC sing 92 n y C2' H2' DHC sing 93 n n C3' C4' DHC doub 94 n y C3' O3' DHC sing 95 n n C4' C5' DHC sing 96 n y C4' O4' DHC sing 97 n n C5' C6' DHC doub 98 n y C5' H5' DHC sing 99 n n C6' H6' DHC sing 100 n n O4' H4' DHC sing 101 n n O3' H3' DHC sing 102 n n O2 HO2 DHC sing 103 n n # _atom_sites.entry_id 9QK5 _atom_sites.fract_transf_matrix[1][1] 0.011103 _atom_sites.fract_transf_matrix[1][2] 0.00641 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DHC A 1 301 301 DHC DHC . C 3 DMS A 1 302 302 DMS DMS . D 4 SO4 A 1 303 303 SO4 SO4 . E 5 HOH A 1 401 27 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 20 HOH HOH . E 5 HOH A 4 404 50 HOH HOH . E 5 HOH A 5 405 85 HOH HOH . E 5 HOH A 6 406 17 HOH HOH . E 5 HOH A 7 407 51 HOH HOH . E 5 HOH A 8 408 74 HOH HOH . E 5 HOH A 9 409 83 HOH HOH . E 5 HOH A 10 410 184 HOH HOH . E 5 HOH A 11 411 46 HOH HOH . E 5 HOH A 12 412 4 HOH HOH . E 5 HOH A 13 413 217 HOH HOH . E 5 HOH A 14 414 6 HOH HOH . E 5 HOH A 15 415 35 HOH HOH . E 5 HOH A 16 416 202 HOH HOH . E 5 HOH A 17 417 89 HOH HOH . E 5 HOH A 18 418 24 HOH HOH . E 5 HOH A 19 419 9 HOH HOH . E 5 HOH A 20 420 125 HOH HOH . E 5 HOH A 21 421 14 HOH HOH . E 5 HOH A 22 422 92 HOH HOH . E 5 HOH A 23 423 56 HOH HOH . E 5 HOH A 24 424 84 HOH HOH . E 5 HOH A 25 425 86 HOH HOH . E 5 HOH A 26 426 43 HOH HOH . E 5 HOH A 27 427 5 HOH HOH . E 5 HOH A 28 428 44 HOH HOH . E 5 HOH A 29 429 108 HOH HOH . E 5 HOH A 30 430 115 HOH HOH . E 5 HOH A 31 431 58 HOH HOH . E 5 HOH A 32 432 8 HOH HOH . E 5 HOH A 33 433 54 HOH HOH . E 5 HOH A 34 434 116 HOH HOH . E 5 HOH A 35 435 70 HOH HOH . E 5 HOH A 36 436 248 HOH HOH . E 5 HOH A 37 437 34 HOH HOH . E 5 HOH A 38 438 19 HOH HOH . E 5 HOH A 39 439 42 HOH HOH . E 5 HOH A 40 440 77 HOH HOH . E 5 HOH A 41 441 30 HOH HOH . E 5 HOH A 42 442 52 HOH HOH . E 5 HOH A 43 443 55 HOH HOH . E 5 HOH A 44 444 29 HOH HOH . E 5 HOH A 45 445 10 HOH HOH . E 5 HOH A 46 446 62 HOH HOH . E 5 HOH A 47 447 255 HOH HOH . E 5 HOH A 48 448 207 HOH HOH . E 5 HOH A 49 449 142 HOH HOH . E 5 HOH A 50 450 232 HOH HOH . E 5 HOH A 51 451 121 HOH HOH . E 5 HOH A 52 452 16 HOH HOH . E 5 HOH A 53 453 57 HOH HOH . E 5 HOH A 54 454 3 HOH HOH . E 5 HOH A 55 455 13 HOH HOH . E 5 HOH A 56 456 18 HOH HOH . E 5 HOH A 57 457 11 HOH HOH . E 5 HOH A 58 458 53 HOH HOH . E 5 HOH A 59 459 208 HOH HOH . E 5 HOH A 60 460 191 HOH HOH . E 5 HOH A 61 461 31 HOH HOH . E 5 HOH A 62 462 59 HOH HOH . E 5 HOH A 63 463 26 HOH HOH . E 5 HOH A 64 464 100 HOH HOH . E 5 HOH A 65 465 48 HOH HOH . E 5 HOH A 66 466 63 HOH HOH . E 5 HOH A 67 467 128 HOH HOH . E 5 HOH A 68 468 236 HOH HOH . E 5 HOH A 69 469 279 HOH HOH . E 5 HOH A 70 470 195 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 15 HOH HOH . E 5 HOH A 73 473 277 HOH HOH . E 5 HOH A 74 474 21 HOH HOH . E 5 HOH A 75 475 122 HOH HOH . E 5 HOH A 76 476 110 HOH HOH . E 5 HOH A 77 477 212 HOH HOH . E 5 HOH A 78 478 41 HOH HOH . E 5 HOH A 79 479 12 HOH HOH . E 5 HOH A 80 480 206 HOH HOH . E 5 HOH A 81 481 243 HOH HOH . E 5 HOH A 82 482 187 HOH HOH . E 5 HOH A 83 483 72 HOH HOH . E 5 HOH A 84 484 1 HOH HOH . E 5 HOH A 85 485 33 HOH HOH . E 5 HOH A 86 486 37 HOH HOH . E 5 HOH A 87 487 23 HOH HOH . E 5 HOH A 88 488 25 HOH HOH . E 5 HOH A 89 489 73 HOH HOH . E 5 HOH A 90 490 99 HOH HOH . E 5 HOH A 91 491 257 HOH HOH . E 5 HOH A 92 492 97 HOH HOH . E 5 HOH A 93 493 81 HOH HOH . E 5 HOH A 94 494 61 HOH HOH . E 5 HOH A 95 495 179 HOH HOH . E 5 HOH A 96 496 79 HOH HOH . E 5 HOH A 97 497 144 HOH HOH . E 5 HOH A 98 498 47 HOH HOH . E 5 HOH A 99 499 94 HOH HOH . E 5 HOH A 100 500 114 HOH HOH . E 5 HOH A 101 501 96 HOH HOH . E 5 HOH A 102 502 38 HOH HOH . E 5 HOH A 103 503 22 HOH HOH . E 5 HOH A 104 504 65 HOH HOH . E 5 HOH A 105 505 39 HOH HOH . E 5 HOH A 106 506 76 HOH HOH . E 5 HOH A 107 507 204 HOH HOH . E 5 HOH A 108 508 28 HOH HOH . E 5 HOH A 109 509 131 HOH HOH . E 5 HOH A 110 510 235 HOH HOH . E 5 HOH A 111 511 88 HOH HOH . E 5 HOH A 112 512 177 HOH HOH . E 5 HOH A 113 513 267 HOH HOH . E 5 HOH A 114 514 233 HOH HOH . E 5 HOH A 115 515 66 HOH HOH . E 5 HOH A 116 516 136 HOH HOH . E 5 HOH A 117 517 249 HOH HOH . E 5 HOH A 118 518 49 HOH HOH . E 5 HOH A 119 519 252 HOH HOH . E 5 HOH A 120 520 271 HOH HOH . E 5 HOH A 121 521 205 HOH HOH . E 5 HOH A 122 522 183 HOH HOH . E 5 HOH A 123 523 256 HOH HOH . E 5 HOH A 124 524 281 HOH HOH . E 5 HOH A 125 525 90 HOH HOH . E 5 HOH A 126 526 247 HOH HOH . E 5 HOH A 127 527 154 HOH HOH . E 5 HOH A 128 528 172 HOH HOH . E 5 HOH A 129 529 113 HOH HOH . E 5 HOH A 130 530 265 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DHC . . . B 2 16.598 4.202 5.368 1 43.42 ? C1 DHC 301 A 1 HETATM 2 O O1 DHC . . . B 2 17.38 3.331 5.795 1 37.95 ? O1 DHC 301 A 1 HETATM 3 C C2 DHC . . . B 2 17.117 5.057 4.243 1 29.36 ? C2 DHC 301 A 1 HETATM 4 C C3 DHC . . . B 2 18.423 5.151 3.987 1 27.5 ? C3 DHC 301 A 1 HETATM 5 C C1' DHC . . . B 2 19.011 5.914 2.893 1 23.63 ? C1' DHC 301 A 1 HETATM 6 C C2' DHC . . . B 2 20.376 5.757 2.603 1 26.69 ? C2' DHC 301 A 1 HETATM 7 C C3' DHC . . . B 2 20.955 6.441 1.553 1 29.4 ? C3' DHC 301 A 1 HETATM 8 C C4' DHC . . . B 2 20.163 7.29 0.779 1 29.62 ? C4' DHC 301 A 1 HETATM 9 C C5' DHC . . . B 2 18.814 7.45 1.05 1 22.95 ? C5' DHC 301 A 1 HETATM 10 C C6' DHC . . . B 2 18.235 6.764 2.099 1 25.82 ? C6' DHC 301 A 1 HETATM 11 O O4' DHC . . . B 2 20.82 7.909 -0.209 1 29.45 ? O4' DHC 301 A 1 HETATM 12 O O3' DHC . . . B 2 22.27 6.311 1.272 1 29.12 ? O3' DHC 301 A 1 HETATM 13 O O2 DHC . . . B 2 15.429 4.422 5.746 1 34.99 ? O2 DHC 301 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #