data_9QNV # _model_server_result.job_id IgW6qElI7AMauqrGvQgg7g _model_server_result.datetime_utc '2025-07-26 01:49:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9qnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 9QNV # _exptl.entry_id 9QNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9QNV _cell.length_a 37.263 _cell.length_b 43.862 _cell.length_c 77.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9QNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 96 A TYR 137 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc2 A O ILE 97 A ILE 138 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc3 A O ASN 99 A ASN 140 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc4 A OE1 GLU 122 A GLU 163 1_555 G K K . A K 706 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.208 ? metalc ? metalc5 A OE2 GLU 122 A GLU 163 1_555 G K K . A K 706 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc6 G K K . A K 706 1_555 H O HOH . A HOH 942 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc7 G K K . A K 706 1_555 H O HOH . A HOH 961 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 109 n n C1 C2 EDO sing 110 n n C1 H11 EDO sing 111 n n C1 H12 EDO sing 112 n n O1 HO1 EDO sing 113 n n C2 O2 EDO sing 114 n n C2 H21 EDO sing 115 n n C2 H22 EDO sing 116 n n O2 HO2 EDO sing 117 n n # _atom_sites.entry_id 9QNV _atom_sites.fract_transf_matrix[1][1] 0.026836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 701 701 EDO EDO . C 2 EDO A 1 702 801 EDO EDO . D 3 A1I76 A 1 703 901 A1I76 LIG . E 2 EDO A 1 704 1001 EDO EDO . F 2 EDO A 1 705 1101 EDO EDO . G 4 K A 1 706 1 K K . H 5 HOH A 1 801 44 HOH HOH . H 5 HOH A 2 802 326 HOH HOH . H 5 HOH A 3 803 379 HOH HOH . H 5 HOH A 4 804 488 HOH HOH . H 5 HOH A 5 805 5 HOH HOH . H 5 HOH A 6 806 481 HOH HOH . H 5 HOH A 7 807 333 HOH HOH . H 5 HOH A 8 808 337 HOH HOH . H 5 HOH A 9 809 6 HOH HOH . H 5 HOH A 10 810 50 HOH HOH . H 5 HOH A 11 811 397 HOH HOH . H 5 HOH A 12 812 316 HOH HOH . H 5 HOH A 13 813 52 HOH HOH . H 5 HOH A 14 814 55 HOH HOH . H 5 HOH A 15 815 434 HOH HOH . H 5 HOH A 16 816 456 HOH HOH . H 5 HOH A 17 817 391 HOH HOH . H 5 HOH A 18 818 389 HOH HOH . H 5 HOH A 19 819 373 HOH HOH . H 5 HOH A 20 820 21 HOH HOH . H 5 HOH A 21 821 335 HOH HOH . H 5 HOH A 22 822 432 HOH HOH . H 5 HOH A 23 823 357 HOH HOH . H 5 HOH A 24 824 322 HOH HOH . H 5 HOH A 25 825 56 HOH HOH . H 5 HOH A 26 826 22 HOH HOH . H 5 HOH A 27 827 428 HOH HOH . H 5 HOH A 28 828 430 HOH HOH . H 5 HOH A 29 829 60 HOH HOH . H 5 HOH A 30 830 369 HOH HOH . H 5 HOH A 31 831 368 HOH HOH . H 5 HOH A 32 832 57 HOH HOH . H 5 HOH A 33 833 332 HOH HOH . H 5 HOH A 34 834 334 HOH HOH . H 5 HOH A 35 835 306 HOH HOH . H 5 HOH A 36 836 461 HOH HOH . H 5 HOH A 37 837 311 HOH HOH . H 5 HOH A 38 838 324 HOH HOH . H 5 HOH A 39 839 327 HOH HOH . H 5 HOH A 40 840 349 HOH HOH . H 5 HOH A 41 841 54 HOH HOH . H 5 HOH A 42 842 20 HOH HOH . H 5 HOH A 43 843 385 HOH HOH . H 5 HOH A 44 844 325 HOH HOH . H 5 HOH A 45 845 304 HOH HOH . H 5 HOH A 46 846 23 HOH HOH . H 5 HOH A 47 847 353 HOH HOH . H 5 HOH A 48 848 392 HOH HOH . H 5 HOH A 49 849 362 HOH HOH . H 5 HOH A 50 850 343 HOH HOH . H 5 HOH A 51 851 53 HOH HOH . H 5 HOH A 52 852 323 HOH HOH . H 5 HOH A 53 853 315 HOH HOH . H 5 HOH A 54 854 346 HOH HOH . H 5 HOH A 55 855 312 HOH HOH . H 5 HOH A 56 856 51 HOH HOH . H 5 HOH A 57 857 361 HOH HOH . H 5 HOH A 58 858 301 HOH HOH . H 5 HOH A 59 859 339 HOH HOH . H 5 HOH A 60 860 365 HOH HOH . H 5 HOH A 61 861 367 HOH HOH . H 5 HOH A 62 862 404 HOH HOH . H 5 HOH A 63 863 309 HOH HOH . H 5 HOH A 64 864 48 HOH HOH . H 5 HOH A 65 865 363 HOH HOH . H 5 HOH A 66 866 47 HOH HOH . H 5 HOH A 67 867 443 HOH HOH . H 5 HOH A 68 868 364 HOH HOH . H 5 HOH A 69 869 467 HOH HOH . H 5 HOH A 70 870 308 HOH HOH . H 5 HOH A 71 871 426 HOH HOH . H 5 HOH A 72 872 319 HOH HOH . H 5 HOH A 73 873 374 HOH HOH . H 5 HOH A 74 874 360 HOH HOH . H 5 HOH A 75 875 470 HOH HOH . H 5 HOH A 76 876 403 HOH HOH . H 5 HOH A 77 877 320 HOH HOH . H 5 HOH A 78 878 305 HOH HOH . H 5 HOH A 79 879 455 HOH HOH . H 5 HOH A 80 880 358 HOH HOH . H 5 HOH A 81 881 348 HOH HOH . H 5 HOH A 82 882 321 HOH HOH . H 5 HOH A 83 883 359 HOH HOH . H 5 HOH A 84 884 310 HOH HOH . H 5 HOH A 85 885 341 HOH HOH . H 5 HOH A 86 886 71 HOH HOH . H 5 HOH A 87 887 314 HOH HOH . H 5 HOH A 88 888 425 HOH HOH . H 5 HOH A 89 889 472 HOH HOH . H 5 HOH A 90 890 318 HOH HOH . H 5 HOH A 91 891 307 HOH HOH . H 5 HOH A 92 892 477 HOH HOH . H 5 HOH A 93 893 413 HOH HOH . H 5 HOH A 94 894 381 HOH HOH . H 5 HOH A 95 895 378 HOH HOH . H 5 HOH A 96 896 377 HOH HOH . H 5 HOH A 97 897 342 HOH HOH . H 5 HOH A 98 898 491 HOH HOH . H 5 HOH A 99 899 445 HOH HOH . H 5 HOH A 100 900 383 HOH HOH . H 5 HOH A 101 901 394 HOH HOH . H 5 HOH A 102 902 384 HOH HOH . H 5 HOH A 103 903 405 HOH HOH . H 5 HOH A 104 904 36 HOH HOH . H 5 HOH A 105 905 436 HOH HOH . H 5 HOH A 106 906 302 HOH HOH . H 5 HOH A 107 907 338 HOH HOH . H 5 HOH A 108 908 303 HOH HOH . H 5 HOH A 109 909 329 HOH HOH . H 5 HOH A 110 910 29 HOH HOH . H 5 HOH A 111 911 480 HOH HOH . H 5 HOH A 112 912 345 HOH HOH . H 5 HOH A 113 913 28 HOH HOH . H 5 HOH A 114 914 468 HOH HOH . H 5 HOH A 115 915 344 HOH HOH . H 5 HOH A 116 916 347 HOH HOH . H 5 HOH A 117 917 331 HOH HOH . H 5 HOH A 118 918 414 HOH HOH . H 5 HOH A 119 919 317 HOH HOH . H 5 HOH A 120 920 313 HOH HOH . H 5 HOH A 121 921 59 HOH HOH . H 5 HOH A 122 922 402 HOH HOH . H 5 HOH A 123 923 427 HOH HOH . H 5 HOH A 124 924 355 HOH HOH . H 5 HOH A 125 925 420 HOH HOH . H 5 HOH A 126 926 366 HOH HOH . H 5 HOH A 127 927 336 HOH HOH . H 5 HOH A 128 928 64 HOH HOH . H 5 HOH A 129 929 69 HOH HOH . H 5 HOH A 130 930 49 HOH HOH . H 5 HOH A 131 931 449 HOH HOH . H 5 HOH A 132 932 372 HOH HOH . H 5 HOH A 133 933 439 HOH HOH . H 5 HOH A 134 934 464 HOH HOH . H 5 HOH A 135 935 26 HOH HOH . H 5 HOH A 136 936 350 HOH HOH . H 5 HOH A 137 937 422 HOH HOH . H 5 HOH A 138 938 35 HOH HOH . H 5 HOH A 139 939 61 HOH HOH . H 5 HOH A 140 940 375 HOH HOH . H 5 HOH A 141 941 412 HOH HOH . H 5 HOH A 142 942 398 HOH HOH . H 5 HOH A 143 943 406 HOH HOH . H 5 HOH A 144 944 446 HOH HOH . H 5 HOH A 145 945 328 HOH HOH . H 5 HOH A 146 946 438 HOH HOH . H 5 HOH A 147 947 485 HOH HOH . H 5 HOH A 148 948 67 HOH HOH . H 5 HOH A 149 949 11 HOH HOH . H 5 HOH A 150 950 465 HOH HOH . H 5 HOH A 151 951 440 HOH HOH . H 5 HOH A 152 952 492 HOH HOH . H 5 HOH A 153 953 72 HOH HOH . H 5 HOH A 154 954 451 HOH HOH . H 5 HOH A 155 955 431 HOH HOH . H 5 HOH A 156 956 18 HOH HOH . H 5 HOH A 157 957 356 HOH HOH . H 5 HOH A 158 958 34 HOH HOH . H 5 HOH A 159 959 424 HOH HOH . H 5 HOH A 160 960 330 HOH HOH . H 5 HOH A 161 961 63 HOH HOH . H 5 HOH A 162 962 382 HOH HOH . H 5 HOH A 163 963 351 HOH HOH . H 5 HOH A 164 964 376 HOH HOH . H 5 HOH A 165 965 487 HOH HOH . H 5 HOH A 166 966 408 HOH HOH . H 5 HOH A 167 967 68 HOH HOH . H 5 HOH A 168 968 452 HOH HOH . H 5 HOH A 169 969 390 HOH HOH . H 5 HOH A 170 970 45 HOH HOH . H 5 HOH A 171 971 400 HOH HOH . H 5 HOH A 172 972 478 HOH HOH . H 5 HOH A 173 973 418 HOH HOH . H 5 HOH A 174 974 454 HOH HOH . H 5 HOH A 175 975 354 HOH HOH . H 5 HOH A 176 976 393 HOH HOH . H 5 HOH A 177 977 388 HOH HOH . H 5 HOH A 178 978 444 HOH HOH . H 5 HOH A 179 979 371 HOH HOH . H 5 HOH A 180 980 401 HOH HOH . H 5 HOH A 181 981 58 HOH HOH . H 5 HOH A 182 982 19 HOH HOH . H 5 HOH A 183 983 447 HOH HOH . H 5 HOH A 184 984 32 HOH HOH . H 5 HOH A 185 985 489 HOH HOH . H 5 HOH A 186 986 13 HOH HOH . H 5 HOH A 187 987 387 HOH HOH . H 5 HOH A 188 988 33 HOH HOH . H 5 HOH A 189 989 352 HOH HOH . H 5 HOH A 190 990 10 HOH HOH . H 5 HOH A 191 991 62 HOH HOH . H 5 HOH A 192 992 483 HOH HOH . H 5 HOH A 193 993 419 HOH HOH . H 5 HOH A 194 994 65 HOH HOH . H 5 HOH A 195 995 466 HOH HOH . H 5 HOH A 196 996 8 HOH HOH . H 5 HOH A 197 997 70 HOH HOH . H 5 HOH A 198 998 386 HOH HOH . H 5 HOH A 199 999 484 HOH HOH . H 5 HOH A 200 1000 395 HOH HOH . H 5 HOH A 201 1001 486 HOH HOH . H 5 HOH A 202 1002 42 HOH HOH . H 5 HOH A 203 1003 410 HOH HOH . H 5 HOH A 204 1004 469 HOH HOH . H 5 HOH A 205 1005 370 HOH HOH . H 5 HOH A 206 1006 41 HOH HOH . H 5 HOH A 207 1007 460 HOH HOH . H 5 HOH A 208 1008 7 HOH HOH . H 5 HOH A 209 1009 458 HOH HOH . H 5 HOH A 210 1010 459 HOH HOH . H 5 HOH A 211 1011 448 HOH HOH . H 5 HOH A 212 1012 409 HOH HOH . H 5 HOH A 213 1013 66 HOH HOH . H 5 HOH A 214 1014 417 HOH HOH . H 5 HOH A 215 1015 4 HOH HOH . H 5 HOH A 216 1016 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 26.366 17.361 -5.397 1 23.29 0 C1 EDO 704 A 1 HETATM 2 O O1 EDO . . . E 2 26.013 16.115 -5.798 1 28.16 0 O1 EDO 704 A 1 HETATM 3 C C2 EDO . . . E 2 27.746 17.577 -5.662 1 21.46 0 C2 EDO 704 A 1 HETATM 4 O O2 EDO . . . E 2 28.538 16.421 -5.675 1 21.41 0 O2 EDO 704 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #