data_9QU1 # _model_server_result.job_id 1nCbkoZI97A69gPTMHw7Hw _model_server_result.datetime_utc '2025-09-17 03:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9qu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 9QU1 # _exptl.entry_id 9QU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.263 _cell.angle_gamma 90 _cell.entry_id 9QU1 _cell.length_a 163.564 _cell.length_b 63.43 _cell.length_c 104.163 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9QU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 208 A CYS 209 1_555 B SG CYS 208 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C OG1 THR 22 C THR 18 1_555 F MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 C OG1 THR 42 C THR 38 1_555 F MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 E O2G GNP . C GNP 201 1_555 F MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc4 E O2B GNP . C GNP 201 1_555 F MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 F MG MG . C MG 202 1_555 K O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 D OG1 THR 22 F THR 18 1_555 H MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 D OG1 THR 42 F THR 38 1_555 H MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc8 G O2G GNP . F GNP 201 1_555 H MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc9 G O2B GNP . F GNP 201 1_555 H MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc10 H MG MG . F MG 202 1_555 L O HOH . F HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 9QU1 _atom_sites.fract_transf_matrix[1][1] 0.006114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GNP C 1 201 267 GNP GNP . F 4 MG C 1 202 268 MG MG . G 3 GNP F 1 201 267 GNP GNP . H 4 MG F 1 202 268 MG MG . I 5 HOH A 1 301 13 HOH HOH . I 5 HOH A 2 302 16 HOH HOH . I 5 HOH A 3 303 193 HOH HOH . I 5 HOH A 4 304 98 HOH HOH . I 5 HOH A 5 305 417 HOH HOH . I 5 HOH A 6 306 21 HOH HOH . I 5 HOH A 7 307 465 HOH HOH . I 5 HOH A 8 308 336 HOH HOH . I 5 HOH A 9 309 24 HOH HOH . I 5 HOH A 10 310 241 HOH HOH . I 5 HOH A 11 311 268 HOH HOH . J 5 HOH B 1 301 92 HOH HOH . J 5 HOH B 2 302 216 HOH HOH . J 5 HOH B 3 303 317 HOH HOH . J 5 HOH B 4 304 463 HOH HOH . J 5 HOH B 5 305 236 HOH HOH . J 5 HOH B 6 306 120 HOH HOH . J 5 HOH B 7 307 467 HOH HOH . J 5 HOH B 8 308 9 HOH HOH . J 5 HOH B 9 309 464 HOH HOH . K 5 HOH C 1 301 11 HOH HOH . K 5 HOH C 2 302 19 HOH HOH . K 5 HOH C 3 303 2 HOH HOH . K 5 HOH C 4 304 380 HOH HOH . K 5 HOH C 5 305 273 HOH HOH . K 5 HOH C 6 306 172 HOH HOH . L 5 HOH F 1 301 12 HOH HOH . L 5 HOH F 2 302 161 HOH HOH . L 5 HOH F 3 303 70 HOH HOH . L 5 HOH F 4 304 8 HOH HOH . L 5 HOH F 5 305 3 HOH HOH . L 5 HOH F 6 306 466 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . G 3 -22.145 2.723 -30.814 1 52.17 ? PG GNP 201 F 1 HETATM 2 O O1G GNP . . . G 3 -22.526 3.38 -29.485 1 53.49 ? O1G GNP 201 F 1 HETATM 3 O O2G GNP . . . G 3 -21.801 1.239 -30.738 1 52.56 ? O2G GNP 201 F 1 HETATM 4 O O3G GNP . . . G 3 -21.191 3.534 -31.694 1 64.71 ? O3G GNP 201 F 1 HETATM 5 N N3B GNP . . . G 3 -23.704 2.755 -31.699 1 47.1 ? N3B GNP 201 F 1 HETATM 6 P PB GNP . . . G 3 -23.759 2.254 -33.294 1 77.25 ? PB GNP 201 F 1 HETATM 7 O O1B GNP . . . G 3 -22.972 3.147 -34.215 1 50.71 ? O1B GNP 201 F 1 HETATM 8 O O2B GNP . . . G 3 -23.611 0.762 -33.386 1 50.63 ? O2B GNP 201 F 1 HETATM 9 O O3A GNP . . . G 3 -25.354 2.628 -33.653 1 42.14 ? O3A GNP 201 F 1 HETATM 10 P PA GNP . . . G 3 -26.586 1.583 -33.499 1 40.45 ? PA GNP 201 F 1 HETATM 11 O O1A GNP . . . G 3 -26.57 0.607 -34.632 1 43.14 ? O1A GNP 201 F 1 HETATM 12 O O2A GNP . . . G 3 -26.732 1.133 -32.073 1 50.66 ? O2A GNP 201 F 1 HETATM 13 O O5' GNP . . . G 3 -27.807 2.645 -33.872 1 66.67 ? O5' GNP 201 F 1 HETATM 14 C C5' GNP . . . G 3 -28.087 3.748 -33.051 1 57.37 ? C5' GNP 201 F 1 HETATM 15 C C4' GNP . . . G 3 -29.532 4.168 -33.241 1 56.6 ? C4' GNP 201 F 1 HETATM 16 O O4' GNP . . . G 3 -29.75 4.682 -34.561 1 69.3 ? O4' GNP 201 F 1 HETATM 17 C C3' GNP . . . G 3 -30.554 3.046 -33.051 1 58.11 ? C3' GNP 201 F 1 HETATM 18 O O3' GNP . . . G 3 -31.691 3.595 -32.427 1 60.41 ? O3' GNP 201 F 1 HETATM 19 C C2' GNP . . . G 3 -30.863 2.639 -34.489 1 60.35 ? C2' GNP 201 F 1 HETATM 20 O O2' GNP . . . G 3 -32.105 2.01 -34.579 1 65.34 ? O2' GNP 201 F 1 HETATM 21 C C1' GNP . . . G 3 -30.795 4.002 -35.192 1 66.37 ? C1' GNP 201 F 1 HETATM 22 N N9 GNP . . . G 3 -30.533 3.925 -36.609 1 65.52 ? N9 GNP 201 F 1 HETATM 23 C C8 GNP . . . G 3 -29.455 3.328 -37.213 1 65.66 ? C8 GNP 201 F 1 HETATM 24 N N7 GNP . . . G 3 -29.492 3.418 -38.506 1 71.02 ? N7 GNP 201 F 1 HETATM 25 C C5 GNP . . . G 3 -30.644 4.107 -38.783 1 70.54 ? C5 GNP 201 F 1 HETATM 26 C C6 GNP . . . G 3 -31.211 4.505 -40.031 1 68.41 ? C6 GNP 201 F 1 HETATM 27 O O6 GNP . . . G 3 -30.794 4.322 -41.161 1 75.19 ? O6 GNP 201 F 1 HETATM 28 N N1 GNP . . . G 3 -32.413 5.195 -39.83 1 69.24 ? N1 GNP 201 F 1 HETATM 29 C C2 GNP . . . G 3 -32.987 5.467 -38.622 1 83.08 ? C2 GNP 201 F 1 HETATM 30 N N2 GNP . . . G 3 -34.146 6.143 -38.637 1 93.9 ? N2 GNP 201 F 1 HETATM 31 N N3 GNP . . . G 3 -32.46 5.099 -37.479 1 83.83 ? N3 GNP 201 F 1 HETATM 32 C C4 GNP . . . G 3 -31.306 4.43 -37.614 1 71.9 ? C4 GNP 201 F 1 HETATM 33 H HNB3 GNP . . . G 3 -24.365 2.423 -31.205 1 58.04 ? HNB3 GNP 201 F 1 HETATM 34 H "H5'2" GNP . . . G 3 -27.514 4.502 -33.261 1 70.36 ? "H5'2" GNP 201 F 1 HETATM 35 H "H5'1" GNP . . . G 3 -27.945 3.539 -32.114 1 70.36 ? "H5'1" GNP 201 F 1 HETATM 36 H H4' GNP . . . G 3 -29.704 4.881 -32.606 1 69.43 ? H4' GNP 201 F 1 HETATM 37 H H3' GNP . . . G 3 -30.182 2.311 -32.539 1 71.25 ? H3' GNP 201 F 1 HETATM 38 H H2' GNP . . . G 3 -30.15 2.075 -34.826 1 73.93 ? H2' GNP 201 F 1 HETATM 39 H HO2' GNP . . . G 3 -32.271 1.617 -33.843 1 79.93 ? HO2' GNP 201 F 1 HETATM 40 H H1' GNP . . . G 3 -31.643 4.466 -35.114 1 81.16 ? H1' GNP 201 F 1 HETATM 41 H H8 GNP . . . G 3 -28.786 2.913 -36.717 1 80.31 ? H8 GNP 201 F 1 HETATM 42 H HN1 GNP . . . G 3 -32.809 5.464 -40.545 1 84.61 ? HN1 GNP 201 F 1 HETATM 43 H HN21 GNP . . . G 3 -34.381 6.612 -37.918 1 114.19 ? HN21 GNP 201 F 1 HETATM 44 H HN22 GNP . . . G 3 -34.694 6.148 -39.338 1 114.19 ? HN22 GNP 201 F 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #