data_9QZ1 # _model_server_result.job_id BI0XdT9R5vlPFhqcePVF5A _model_server_result.datetime_utc '2025-06-30 17:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9qz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9QZ1 # _exptl.entry_id 9QZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.055 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2R,3R,4S,5R,6R)-6-hydroxycyclohexane-1,2,3,4,5-pentayl pentakis[dihydrogen (phosphate)]' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.07 _cell.angle_gamma 90 _cell.entry_id 9QZ1 _cell.length_a 52.69 _cell.length_b 119.84 _cell.length_c 75.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9QZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 397 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 396 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 345 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 344 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H17 O21 P5' _chem_comp.formula_weight 580.055 _chem_comp.id ZNZ _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2R,3R,4S,5R,6R)-6-hydroxycyclohexane-1,2,3,4,5-pentayl pentakis[dihydrogen (phosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms myo-(3OH)IP5 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 P1 ZNZ doub 376 n n O21 P1 ZNZ sing 377 n n P1 O41 ZNZ sing 378 n n P1 O11 ZNZ sing 379 n n O42 P2 ZNZ doub 380 n n O11 C1 ZNZ sing 381 n n O26 P6 ZNZ doub 382 n n P2 O12 ZNZ sing 383 n n P2 O22 ZNZ sing 384 n n P2 O32 ZNZ sing 385 n n O25 P5 ZNZ doub 386 n n O12 C2 ZNZ sing 387 n n C1 C2 ZNZ sing 388 n n C1 C6 ZNZ sing 389 n n O16 P6 ZNZ sing 390 n n O16 C6 ZNZ sing 391 n n P6 O36 ZNZ sing 392 n n P6 O46 ZNZ sing 393 n n C2 C3 ZNZ sing 394 n n C6 C5 ZNZ sing 395 n n O45 P5 ZNZ sing 396 n n P5 O15 ZNZ sing 397 n n P5 O35 ZNZ sing 398 n n O15 C5 ZNZ sing 399 n n C3 O13 ZNZ sing 400 n n C3 C4 ZNZ sing 401 n n C5 C4 ZNZ sing 402 n n O23 P3 ZNZ doub 403 n n O13 P3 ZNZ sing 404 n n C4 O14 ZNZ sing 405 n n O43 P3 ZNZ sing 406 n n P3 O33 ZNZ sing 407 n n O46 H1 ZNZ sing 408 n n O36 H2 ZNZ sing 409 n n C6 H3 ZNZ sing 410 n n C1 H4 ZNZ sing 411 n n O41 H5 ZNZ sing 412 n n O21 H6 ZNZ sing 413 n n C5 H7 ZNZ sing 414 n n O45 H8 ZNZ sing 415 n n O35 H9 ZNZ sing 416 n n C4 H10 ZNZ sing 417 n n O14 H11 ZNZ sing 418 n n C3 H12 ZNZ sing 419 n n O43 H13 ZNZ sing 420 n n O33 H14 ZNZ sing 421 n n C2 H15 ZNZ sing 422 n n O22 H16 ZNZ sing 423 n n O32 H17 ZNZ sing 424 n n # _atom_sites.entry_id 9QZ1 _atom_sites.fract_transf_matrix[1][1] 0.018979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006192 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZNZ A 1 501 1 ZNZ I53 . D 2 ZNZ A 1 502 3 ZNZ I53 . E 2 ZNZ B 1 501 2 ZNZ I53 . F 3 HOH A 1 601 78 HOH HOH . F 3 HOH A 2 602 81 HOH HOH . F 3 HOH A 3 603 47 HOH HOH . F 3 HOH A 4 604 54 HOH HOH . F 3 HOH A 5 605 69 HOH HOH . F 3 HOH A 6 606 34 HOH HOH . F 3 HOH A 7 607 5 HOH HOH . F 3 HOH A 8 608 3 HOH HOH . F 3 HOH A 9 609 1 HOH HOH . F 3 HOH A 10 610 84 HOH HOH . F 3 HOH A 11 611 63 HOH HOH . F 3 HOH A 12 612 8 HOH HOH . F 3 HOH A 13 613 51 HOH HOH . F 3 HOH A 14 614 24 HOH HOH . F 3 HOH A 15 615 20 HOH HOH . F 3 HOH A 16 616 36 HOH HOH . F 3 HOH A 17 617 77 HOH HOH . F 3 HOH A 18 618 42 HOH HOH . F 3 HOH A 19 619 55 HOH HOH . F 3 HOH A 20 620 15 HOH HOH . F 3 HOH A 21 621 32 HOH HOH . F 3 HOH A 22 622 52 HOH HOH . F 3 HOH A 23 623 31 HOH HOH . F 3 HOH A 24 624 22 HOH HOH . F 3 HOH A 25 625 37 HOH HOH . F 3 HOH A 26 626 44 HOH HOH . F 3 HOH A 27 627 2 HOH HOH . F 3 HOH A 28 628 10 HOH HOH . F 3 HOH A 29 629 49 HOH HOH . F 3 HOH A 30 630 19 HOH HOH . F 3 HOH A 31 631 17 HOH HOH . F 3 HOH A 32 632 60 HOH HOH . F 3 HOH A 33 633 11 HOH HOH . F 3 HOH A 34 634 40 HOH HOH . F 3 HOH A 35 635 67 HOH HOH . F 3 HOH A 36 636 16 HOH HOH . F 3 HOH A 37 637 53 HOH HOH . F 3 HOH A 38 638 59 HOH HOH . F 3 HOH A 39 639 83 HOH HOH . F 3 HOH A 40 640 79 HOH HOH . F 3 HOH A 41 641 73 HOH HOH . G 3 HOH B 1 601 72 HOH HOH . G 3 HOH B 2 602 4 HOH HOH . G 3 HOH B 3 603 61 HOH HOH . G 3 HOH B 4 604 45 HOH HOH . G 3 HOH B 5 605 57 HOH HOH . G 3 HOH B 6 606 48 HOH HOH . G 3 HOH B 7 607 76 HOH HOH . G 3 HOH B 8 608 56 HOH HOH . G 3 HOH B 9 609 14 HOH HOH . G 3 HOH B 10 610 46 HOH HOH . G 3 HOH B 11 611 26 HOH HOH . G 3 HOH B 12 612 74 HOH HOH . G 3 HOH B 13 613 39 HOH HOH . G 3 HOH B 14 614 27 HOH HOH . G 3 HOH B 15 615 33 HOH HOH . G 3 HOH B 16 616 21 HOH HOH . G 3 HOH B 17 617 7 HOH HOH . G 3 HOH B 18 618 71 HOH HOH . G 3 HOH B 19 619 13 HOH HOH . G 3 HOH B 20 620 9 HOH HOH . G 3 HOH B 21 621 50 HOH HOH . G 3 HOH B 22 622 6 HOH HOH . G 3 HOH B 23 623 30 HOH HOH . G 3 HOH B 24 624 25 HOH HOH . G 3 HOH B 25 625 66 HOH HOH . G 3 HOH B 26 626 12 HOH HOH . G 3 HOH B 27 627 70 HOH HOH . G 3 HOH B 28 628 18 HOH HOH . G 3 HOH B 29 629 23 HOH HOH . G 3 HOH B 30 630 43 HOH HOH . G 3 HOH B 31 631 28 HOH HOH . G 3 HOH B 32 632 65 HOH HOH . G 3 HOH B 33 633 29 HOH HOH . G 3 HOH B 34 634 38 HOH HOH . G 3 HOH B 35 635 64 HOH HOH . G 3 HOH B 36 636 75 HOH HOH . G 3 HOH B 37 637 58 HOH HOH . G 3 HOH B 38 638 80 HOH HOH . G 3 HOH B 39 639 35 HOH HOH . G 3 HOH B 40 640 62 HOH HOH . G 3 HOH B 41 641 41 HOH HOH . G 3 HOH B 42 642 68 HOH HOH . G 3 HOH B 43 643 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O46 ZNZ . . . C 2 15.602 -8.549 1.441 0.86 62.97 ? O46 ZNZ 501 A 1 HETATM 2 P P6 ZNZ . . . C 2 15.153 -7.137 0.691 0.86 68.15 ? P6 ZNZ 501 A 1 HETATM 3 O O26 ZNZ . . . C 2 13.909 -6.363 1.482 0.86 59.04 -1 O26 ZNZ 501 A 1 HETATM 4 O O36 ZNZ . . . C 2 16.505 -6.189 0.581 0.86 60.78 -1 O36 ZNZ 501 A 1 HETATM 5 O O16 ZNZ . . . C 2 14.637 -7.501 -0.831 0.86 65.99 ? O16 ZNZ 501 A 1 HETATM 6 C C6 ZNZ . . . C 2 15.552 -8.315 -1.505 0.86 66.28 ? C6 ZNZ 501 A 1 HETATM 7 C C1 ZNZ . . . C 2 15.654 -7.826 -2.944 0.86 64.23 ? C1 ZNZ 501 A 1 HETATM 8 O O11 ZNZ . . . C 2 16.09 -6.486 -2.993 0.86 60.56 ? O11 ZNZ 501 A 1 HETATM 9 P P1 ZNZ . . . C 2 14.947 -5.431 -3.581 0.86 59.49 ? P1 ZNZ 501 A 1 HETATM 10 O O41 ZNZ . . . C 2 15.402 -3.859 -3.376 0.86 48.28 ? O41 ZNZ 501 A 1 HETATM 11 O O31 ZNZ . . . C 2 14.763 -5.748 -5.201 0.86 57.03 -1 O31 ZNZ 501 A 1 HETATM 12 O O21 ZNZ . . . C 2 13.541 -5.675 -2.766 0.86 56.95 -1 O21 ZNZ 501 A 1 HETATM 13 C C5 ZNZ . . . C 2 15.103 -9.772 -1.468 0.86 66.49 ? C5 ZNZ 501 A 1 HETATM 14 O O15 ZNZ . . . C 2 14.998 -10.214 -0.154 0.86 73.8 ? O15 ZNZ 501 A 1 HETATM 15 P P5 ZNZ . . . C 2 13.653 -11.094 0.188 0.86 78.86 ? P5 ZNZ 501 A 1 HETATM 16 O O45 ZNZ . . . C 2 13.601 -12.379 -0.861 0.86 72.9 ? O45 ZNZ 501 A 1 HETATM 17 O O35 ZNZ . . . C 2 12.334 -10.126 -0.028 0.86 64.18 -1 O35 ZNZ 501 A 1 HETATM 18 O O25 ZNZ . . . C 2 13.796 -11.572 1.763 0.86 73.15 -1 O25 ZNZ 501 A 1 HETATM 19 C C4 ZNZ . . . C 2 16.176 -10.67 -2.068 0.86 70.86 ? C4 ZNZ 501 A 1 HETATM 20 O O14 ZNZ . . . C 2 15.895 -12.049 -2.04 0.86 73.21 ? O14 ZNZ 501 A 1 HETATM 21 C C3 ZNZ . . . C 2 16.401 -10.261 -3.525 0.86 70.81 ? C3 ZNZ 501 A 1 HETATM 22 O O13 ZNZ . . . C 2 15.253 -10.579 -4.286 0.86 73.54 ? O13 ZNZ 501 A 1 HETATM 23 P P3 ZNZ . . . C 2 15.17 -11.772 -5.432 0.86 82.77 ? P3 ZNZ 501 A 1 HETATM 24 O O43 ZNZ . . . C 2 14.248 -12.982 -4.771 0.86 81.58 ? O43 ZNZ 501 A 1 HETATM 25 O O33 ZNZ . . . C 2 16.672 -12.365 -5.823 0.86 75.56 -1 O33 ZNZ 501 A 1 HETATM 26 O O23 ZNZ . . . C 2 14.41 -11.191 -6.792 0.86 70.78 -1 O23 ZNZ 501 A 1 HETATM 27 C C2 ZNZ . . . C 2 16.567 -8.749 -3.772 0.86 67.49 ? C2 ZNZ 501 A 1 HETATM 28 O O12 ZNZ . . . C 2 16.149 -8.474 -5.093 0.86 65.28 ? O12 ZNZ 501 A 1 HETATM 29 P P2 ZNZ . . . C 2 17.184 -8.355 -6.378 0.86 56.53 ? P2 ZNZ 501 A 1 HETATM 30 O O22 ZNZ . . . C 2 16.342 -8.484 -7.807 0.86 50.03 ? O22 ZNZ 501 A 1 HETATM 31 O O32 ZNZ . . . C 2 17.93 -6.903 -6.21 0.86 55.18 -1 O32 ZNZ 501 A 1 HETATM 32 O O42 ZNZ . . . C 2 18.343 -9.516 -6.256 0.86 64.1 -1 O42 ZNZ 501 A 1 HETATM 33 H H1 ZNZ . . . C 2 15.628 -8.427 2.37 0.86 75.57 ? H1 ZNZ 501 A 1 HETATM 34 H H3 ZNZ . . . C 2 16.507 -8.236 -0.999 0.86 79.53 ? H3 ZNZ 501 A 1 HETATM 35 H H4 ZNZ . . . C 2 14.668 -7.821 -3.391 0.86 77.08 ? H4 ZNZ 501 A 1 HETATM 36 H H5 ZNZ . . . C 2 14.785 -3.3 -3.821 0.86 57.94 ? H5 ZNZ 501 A 1 HETATM 37 H H7 ZNZ . . . C 2 14.148 -9.833 -1.975 0.86 79.79 ? H7 ZNZ 501 A 1 HETATM 38 H H8 ZNZ . . . C 2 12.969 -13.009 -0.56 0.86 87.48 ? H8 ZNZ 501 A 1 HETATM 39 H H10 ZNZ . . . C 2 17.052 -10.566 -1.439 0.86 85.03 ? H10 ZNZ 501 A 1 HETATM 40 H H11 ZNZ . . . C 2 16.712 -12.515 -1.908 0.86 87.85 ? H11 ZNZ 501 A 1 HETATM 41 H H12 ZNZ . . . C 2 17.292 -10.8 -3.821 0.86 84.97 ? H12 ZNZ 501 A 1 HETATM 42 H H13 ZNZ . . . C 2 14.163 -13.701 -5.377 0.86 97.9 ? H13 ZNZ 501 A 1 HETATM 43 H H15 ZNZ . . . C 2 17.608 -8.545 -3.556 0.86 80.98 ? H15 ZNZ 501 A 1 HETATM 44 H H16 ZNZ . . . C 2 16.886 -8.281 -8.548 0.86 60.03 ? H16 ZNZ 501 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #